View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9184_low_9 (Length: 252)

Name: NF9184_low_9
Description: NF9184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9184_low_9
NF9184_low_9
[»] chr3 (3 HSPs)
chr3 (161-252)||(53614889-53614980)
chr3 (170-243)||(53615964-53616037)
chr3 (21-55)||(53615099-53615133)
[»] chr5 (4 HSPs)
chr5 (161-243)||(20216702-20216784)
chr5 (161-252)||(20214265-20214357)
chr5 (175-252)||(1796124-1796202)
chr5 (21-52)||(20214474-20214505)
[»] chr2 (3 HSPs)
chr2 (161-241)||(13568052-13568132)
chr2 (161-252)||(8534652-8534743)
chr2 (175-252)||(8535609-8535687)
[»] chr7 (4 HSPs)
chr7 (161-235)||(11658467-11658541)
chr7 (171-251)||(48934852-48934933)
chr7 (184-243)||(11662514-11662572)
chr7 (21-55)||(11659353-11659387)
[»] chr4 (5 HSPs)
chr4 (161-250)||(55603471-55603560)
chr4 (161-243)||(17388150-17388232)
chr4 (175-243)||(17383072-17383140)
chr4 (21-55)||(55603329-55603363)
chr4 (161-225)||(55602459-55602523)
[»] chr1 (1 HSPs)
chr1 (188-233)||(35066968-35067013)


Alignment Details
Target: chr3 (Bit Score: 64; Significance: 4e-28; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 161 - 252
Target Start/End: Complemental strand, 53614980 - 53614889
Alignment:
Q  161 cacacgtgacctgtcatataggcgttgaccgagtcaaaattgacataaatgactattattgcaaatgggctaattgttgggggtcaaaattg 252  Q
    ||||||||||||| |||||||||||||| |||||||||||||||||||| ||||  ||||||||||||||||||| ||||||| ||||||||    
T  53614980 cacacgtgacctgccatataggcgttgatcgagtcaaaattgacataaaggactgctattgcaaatgggctaattcttgggggccaaaattg 53614889  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 170 - 243
Target Start/End: Original strand, 53615964 - 53616037
Alignment:
Q  170 cctgtcatataggcgttgaccgagtcaaaattgacataaatgactattattgcaaatgggctaattgttggggg 243  Q
    |||| ||||||| |||||||||||||| ||||||| ||||  |||| ||||||||| | ||||||| |||||||    
T  53615964 cctgccatatagacgttgaccgagtcagaattgacgtaaagaactagtattgcaaaggagctaattcttggggg 53616037  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 55
Target Start/End: Complemental strand, 53615133 - 53615099
Alignment:
Q  21 ataggagagatgaaggaaatgtcacgcctcttcca 55  Q
    |||||||||||||||||||||||||| ||||||||    
T  53615133 ataggagagatgaaggaaatgtcacggctcttcca 53615099  T

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Target: chr5 (Bit Score: 63; Significance: 2e-27; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 161 - 243
Target Start/End: Original strand, 20216702 - 20216784
Alignment:
Q  161 cacacgtgacctgtcatataggcgttgaccgagtcaaaattgacataaatgactattattgcaaatgggctaattgttggggg 243  Q
    ||||||||||||| |||||||||||||||||||||||||||||| |||| ||||| ||||||||||||||||||| |||||||    
T  20216702 cacacgtgacctgccatataggcgttgaccgagtcaaaattgacgtaaaggactactattgcaaatgggctaattcttggggg 20216784  T

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Target: chr5; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 161 - 252
Target Start/End: Complemental strand, 20214357 - 20214265
Alignment:
Q  161 cacacgtgacctgtcatataggcgttgaccgagtcaaaattgacataaatgactattattgcaaatgggctaattgttg-ggggtcaaaattg 252  Q
    |||||||| |||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| ||||| ||| |||| ||||||||    
T  20214357 cacacgtggcctgccatataggcgttgaccgagtcaaaattgacataaaggactactattgcaaatgggataattcttgaggggccaaaattg 20214265  T

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Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 175 - 252
Target Start/End: Complemental strand, 1796202 - 1796124
Alignment:
Q  175 catataggcgttgaccgagtcaaaattgacataaatgactattattgcaaatgggctaattgttggggg-tcaaaattg 252  Q
    ||||||||||||||| |||||||||||||  |||| ||||| ||||||||||||| ||||| ||||||| |||||||||    
T  1796202 catataggcgttgactgagtcaaaattgaactaaaggactactattgcaaatgggttaattcttgggggatcaaaattg 1796124  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 52
Target Start/End: Complemental strand, 20214505 - 20214474
Alignment:
Q  21 ataggagagatgaaggaaatgtcacgcctctt 52  Q
    ||||||||||||||||||||||||||||||||    
T  20214505 ataggagagatgaaggaaatgtcacgcctctt 20214474  T

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Target: chr2 (Bit Score: 57; Significance: 7e-24; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 161 - 241
Target Start/End: Complemental strand, 13568132 - 13568052
Alignment:
Q  161 cacacgtgacctgtcatataggcgttgaccgagtcaaaattgacataaatgactattattgcaaatgggctaattgttggg 241  Q
    |||||||| |||| |||||||||||||||||||||||||||||| |||||||||| ||||||||| ||||||||| |||||    
T  13568132 cacacgtggcctgccatataggcgttgaccgagtcaaaattgacctaaatgactactattgcaaaggggctaatttttggg 13568052  T

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Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 161 - 252
Target Start/End: Complemental strand, 8534743 - 8534652
Alignment:
Q  161 cacacgtgacctgtcatataggcgttgaccgagtcaaaattgacataaatgactattattgcaaatgggctaattgttgggggtcaaaattg 252  Q
    |||||||  |||| |||||||||||||||| ||||||||||||| |||| ||||| |||||||||  |||||||| ||||||  ||||||||    
T  8534743 cacacgtagcctgccatataggcgttgaccaagtcaaaattgacctaaaggactactattgcaaagaggctaattcttggggaccaaaattg 8534652  T

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Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 175 - 252
Target Start/End: Original strand, 8535609 - 8535687
Alignment:
Q  175 catataggcgttgaccgagtcaaaattgacataaatgactattattgcaaatgggctaattgtt-gggggtcaaaattg 252  Q
    ||||||||| |||||| ||||||||||||| |||| ||||| ||||||||| ||||||||| || ||||||||||||||    
T  8535609 catataggcattgaccaagtcaaaattgacctaaaggactactattgcaaaggggctaattcttagggggtcaaaattg 8535687  T

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Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 161 - 235
Target Start/End: Complemental strand, 11658541 - 11658467
Alignment:
Q  161 cacacgtgacctgtcatataggcgttgaccgagtcaaaattgacataaatgactattattgcaaatgggctaatt 235  Q
    |||||||| |||| ||||||||||||||||||||||||||||||||||| ||||| |||| |||| |||||||||    
T  11658541 cacacgtggcctgccatataggcgttgaccgagtcaaaattgacataaaggactactattacaaaggggctaatt 11658467  T

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Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 171 - 251
Target Start/End: Original strand, 48934852 - 48934933
Alignment:
Q  171 ctgtcatataggcgttgaccgagtcaaaattgacataaatgactattattgcaaatgggctaattgttggggg-tcaaaatt 251  Q
    ||||||||||||||||||||| ||| |||||||  |||| ||||| ||||||||||||||||||| ||||||| ||||||||    
T  48934852 ctgtcatataggcgttgaccgggtcgaaattgaactaaaggactactattgcaaatgggctaattcttgggggatcaaaatt 48934933  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 184 - 243
Target Start/End: Original strand, 11662514 - 11662572
Alignment:
Q  184 gttgaccgagtcaaaattgacataaatgactattattgcaaatgggctaattgttggggg 243  Q
    ||||||||| |||||||||||||||| ||||| ||||||||| ||||||||| |||||||    
T  11662514 gttgaccga-tcaaaattgacataaaggactactattgcaaaggggctaattcttggggg 11662572  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 55
Target Start/End: Original strand, 11659353 - 11659387
Alignment:
Q  21 ataggagagatgaaggaaatgtcacgcctcttcca 55  Q
    |||||||||||||||||||||||| ||||||||||    
T  11659353 ataggagagatgaaggaaatgtcaggcctcttcca 11659387  T

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Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 161 - 250
Target Start/End: Original strand, 55603471 - 55603560
Alignment:
Q  161 cacacgtgacctgtcatataggcgttgaccgagtcaaaattgacataaatgactattattgcaaatgggctaattgttgggggtcaaaat 250  Q
    |||||||| |||| |||| ||||||||| |||||||||||||||||||| ||||| ||||||||||| ||| ||| ||||||| ||||||    
T  55603471 cacacgtggcctgccatacaggcgttgatcgagtcaaaattgacataaaggactactattgcaaatgagcttattcttgggggccaaaat 55603560  T

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Target: chr4; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 161 - 243
Target Start/End: Original strand, 17388150 - 17388232
Alignment:
Q  161 cacacgtgacctgtcatataggcgttgaccgagtcaaaattgacataaatgactattattgcaaatgggctaattgttggggg 243  Q
    |||||||| |||| |||||||||||||||| ||||||||||||| |||| ||||| ||||| ||| ||||||||| |||||||    
T  17388150 cacacgtggcctgccatataggcgttgaccaagtcaaaattgacctaaaggactactattgtaaaggggctaattcttggggg 17388232  T

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Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 175 - 243
Target Start/End: Complemental strand, 17383140 - 17383072
Alignment:
Q  175 catataggcgttgaccgagtcaaaattgacataaatgactattattgcaaatgggctaattgttggggg 243  Q
    |||||||||||||||| ||||||||||||| |||| ||||| ||||||||| ||| ||||| |||||||    
T  17383140 catataggcgttgaccaagtcaaaattgacctaaaggactactattgcaaaggggataattcttggggg 17383072  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 21 - 55
Target Start/End: Original strand, 55603329 - 55603363
Alignment:
Q  21 ataggagagatgaaggaaatgtcacgcctcttcca 55  Q
    |||||||||||||||||||||||||||||||||||    
T  55603329 ataggagagatgaaggaaatgtcacgcctcttcca 55603363  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 225
Target Start/End: Complemental strand, 55602523 - 55602459
Alignment:
Q  161 cacacgtgacctgtcatataggcgttgaccgagtcaaaattgacataaatgactattattgcaaa 225  Q
    |||||||| |||  ||||||||| |||| ||||||||||||||| ||||  |||| |||||||||    
T  55602523 cacacgtggcctaccatataggcattgatcgagtcaaaattgacgtaaaacactactattgcaaa 55602459  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 188 - 233
Target Start/End: Original strand, 35066968 - 35067013
Alignment:
Q  188 accgagtcaaaattgacataaatgactattattgcaaatgggctaa 233  Q
    |||||||||||||||||  ||| ||||||||||||||| |||||||    
T  35066968 accgagtcaaaattgaccaaaaggactattattgcaaaggggctaa 35067013  T

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