View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9185_low_3 (Length: 356)
Name: NF9185_low_3
Description: NF9185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9185_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 5 - 340
Target Start/End: Complemental strand, 31399146 - 31398809
Alignment:
| Q |
5 |
cattttttgctattttaagtcaatgaccaagtattagtcaatgtcgaaaagaggcaacnnnnnnnnntt--acattcaaatgaatcacatatctaatgac |
102 |
Q |
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| T |
31399146 |
cattttctgctattttaagtcaatgaccaagtattagtcaatgtcgaaaagaggcaacaaaaaaaaaattaacattcaaatgaatcacatatctaatgac |
31399047 |
T |
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| Q |
103 |
taaccttgaccatagccaacatcattatctatcctagcataaacagcaagaatatcccataattttgacaaattctctttcttctcataaaaaaccagtg |
202 |
Q |
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| T |
31399046 |
taaccttgaccatagccaacatcattatctatcctagcataaacagcaagaatatcccataattttgacaaattctctttcttctcataaaaaaccagtg |
31398947 |
T |
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| Q |
203 |
tcctatcggtacgaatcacgtcaagacctgaaatgtgtttatataagaaaaagaaagtaagataattcaccatgtgagttattttatgatgatagaattt |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31398946 |
tcctatcggtacgaatcacgtcaagacctgaaatgtgtttatataagaaaaagaaagtaagataattcaccatgtgagttattttatgatgatagaattt |
31398847 |
T |
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| Q |
303 |
tacatttcttcatttgaaaaacatccaatagtatacat |
340 |
Q |
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| T |
31398846 |
tacatttcttcatttgaaaaacatccaatagtatacat |
31398809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 104 - 235
Target Start/End: Original strand, 34941494 - 34941625
Alignment:
| Q |
104 |
aaccttgaccatagccaacatcattatctatcctagcataaacagcaagaatatcccataattttgacaaattctctttcttctcataaaaaaccagtgt |
203 |
Q |
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|||||||||| || ||||| || |||||||||| ||||||||| |||||||||||||||||||||||||| || |||| |||||||||||||||| ||| |
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| T |
34941494 |
aaccttgaccgtatccaacttctttatctatccaagcataaaccgcaagaatatcccataattttgacaagttttcttgtttctcataaaaaaccaatgt |
34941593 |
T |
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| Q |
204 |
cctatcggtacgaatcacgtcaagacctgaaa |
235 |
Q |
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| T |
34941594 |
tctatcagtgcgaaccacgtcaagacctgaaa |
34941625 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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