View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9185_low_9 (Length: 239)
Name: NF9185_low_9
Description: NF9185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9185_low_9 |
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| [»] chr3 (10 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 10)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 9 - 239
Target Start/End: Original strand, 6245581 - 6245811
Alignment:
| Q |
9 |
acatcatctagaacaagcaaatatttcttccctgctagccgctgttgcaattgacgtttaagtatttccctgtcgtcatcatataatgttgataaagaaa |
108 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
6245581 |
acatcatctagaacaagcaaatatttcttccctgctagccgctgttgcaattgacgtttaagtatttccttgtcgtcatcatataatgttgataaagaaa |
6245680 |
T |
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| Q |
109 |
ttgacttgagaactgatttgatgagatgacgataattaaaagattctgaaacatggatccatcctataacttcaaattgatccctcgtcatgtggtcatt |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6245681 |
ttgacttgagaactgatttgatgagatgacgataattaaaagattctgaaacatggatccatcctataacttcaaattgatccctcgtcatgtggtcatt |
6245780 |
T |
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| Q |
209 |
gtaaacaagctgcgcaagggttgtcttacct |
239 |
Q |
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| T |
6245781 |
gtaaacaagctgcgcaagggttgtcttacct |
6245811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 9 - 239
Target Start/End: Original strand, 6169185 - 6169415
Alignment:
| Q |
9 |
acatcatctagaacaagcaaatatttcttccctgctagccgctgttgcaattgacgtttaagtatttccctgtcgtcatcatataatgttgataaagaaa |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| ||||||||||||||||||||||||| |
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| T |
6169185 |
acatcatctagaacaagcaaatatttcttccctgctagccgctgttgcaattgatgtttaagtatttccttgtcttcatcatataatgttgataaagaaa |
6169284 |
T |
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| Q |
109 |
ttgacttgagaactgatttgatgagatgacgataattaaaagattctgaaacatggatccatcctataacttcaaattgatccctcgtcatgtggtcatt |
208 |
Q |
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| T |
6169285 |
ttgacttgagaattgatttcatgagatgacgatagttaaaagattttgaaacatggatccatcctataacttcaaattgatccctcgtcatgtggtcatt |
6169384 |
T |
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| Q |
209 |
gtaaacaagctgcgcaagggttgtcttacct |
239 |
Q |
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| T |
6169385 |
ataaacaagctgcgcaagggttgtcttacct |
6169415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 8 - 238
Target Start/End: Original strand, 6265984 - 6266214
Alignment:
| Q |
8 |
gacatcatctagaacaagcaaatatttcttccctgctagccgctgttgcaattgacgtttaagtatttccctgtcgtcatcatataatgttgataaagaa |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || ||||||||| || | |||||| || | || | ||||| |
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| T |
6265984 |
gacatcatctagaacaagcaaatatttcttccctgctagctgctgttgcaattgactgttgagtatttccgtgccttcatcacctacttctgctgaagaa |
6266083 |
T |
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| Q |
108 |
attgacttgagaactgatttgatgagatgacgataattaaaagattctgaaacatggatccatcctataacttcaaattgatccctcgtcatgtggtcat |
207 |
Q |
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|||||| |||||| |||||||||||||||| ||||||||||| |||||||||||||| ||| || ||| |||||| || ||| || | ||||||| |
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| T |
6266084 |
attgacctgagaattgatttgatgagatgatcataattaaaagtttctgaaacatggacccaagctttaaattcaaactgctcctgtatcctatggtcat |
6266183 |
T |
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| Q |
208 |
tgtaaacaagctgcgcaagggttgtcttacc |
238 |
Q |
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| T |
6266184 |
tgtaaacaagctgggcaagggctgtcttacc |
6266214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 199 - 239
Target Start/End: Complemental strand, 6721636 - 6721596
Alignment:
| Q |
199 |
tgtggtcattgtaaacaagctgcgcaagggttgtcttacct |
239 |
Q |
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| T |
6721636 |
tgtggtcattgtaaacaagctgggcaagggttgtcttacct |
6721596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 199 - 239
Target Start/End: Original strand, 6142767 - 6142807
Alignment:
| Q |
199 |
tgtggtcattgtaaacaagctgcgcaagggttgtcttacct |
239 |
Q |
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| T |
6142767 |
tgtggtcattgtaaataaactgcgcaagggttgtcttacct |
6142807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 48
Target Start/End: Original strand, 6259494 - 6259532
Alignment:
| Q |
10 |
catcatctagaacaagcaaatatttcttccctgctagcc |
48 |
Q |
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|||||||||||||||| |||||||| ||||||||||||| |
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| T |
6259494 |
catcatctagaacaagtaaatatttattccctgctagcc |
6259532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 201 - 238
Target Start/End: Original strand, 6259640 - 6259677
Alignment:
| Q |
201 |
tggtcattgtaaacaagctgcgcaagggttgtcttacc |
238 |
Q |
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| T |
6259640 |
tggtcattgtaaacaagctgggcaagggctgtcttacc |
6259677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 201 - 238
Target Start/End: Complemental strand, 13270159 - 13270122
Alignment:
| Q |
201 |
tggtcattgtaaacaagctgcgcaagggttgtcttacc |
238 |
Q |
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| T |
13270159 |
tggtcattgtaaacaagctgagcaagggctgtcttacc |
13270122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 238
Target Start/End: Complemental strand, 6590954 - 6590862
Alignment:
| Q |
146 |
aaaagattctgaaacatggatccatcctataacttcaaattgatccctcgtcatgtggtcattgtaaacaagctgcgcaagggttgtcttacc |
238 |
Q |
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| T |
6590954 |
aaaagattttgaaacatagacccaagctttaagttcaaattgctccagtatcttgtggtccttgtaaacaagccgggcaagggttgtcttacc |
6590862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 238
Target Start/End: Original strand, 6900519 - 6900611
Alignment:
| Q |
146 |
aaaagattctgaaacatggatccatcctataacttcaaattgatccctcgtcatgtggtcattgtaaacaagctgcgcaagggttgtcttacc |
238 |
Q |
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| T |
6900519 |
aaaagattccgaaacatggacccaagctttaatttcaaaatgctccacgatcatgtcgtcatagtaaacaagctgggcgagggttgtcttacc |
6900611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 62
Target Start/End: Complemental strand, 35140102 - 35140050
Alignment:
| Q |
10 |
catcatctagaacaagcaaatatttcttccctgctagccgctgttgcaattga |
62 |
Q |
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|||||||||||||||| |||||||| ||||||||||||| ||||||| |||| |
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| T |
35140102 |
catcatctagaacaagtaaatatttattccctgctagccagtgttgcagttga |
35140050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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