View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9186_high_11 (Length: 281)
Name: NF9186_high_11
Description: NF9186
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9186_high_11 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 72 - 268
Target Start/End: Original strand, 41292664 - 41292860
Alignment:
| Q |
72 |
tcaagaagaaaaatattgtcatacgtgaaactaattattttcatttgaaataaatacaaccaaaagtaaaataccatttgtggaatactaacatgacagt |
171 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
41292664 |
tcaagaagaaaaatattgtcatacgtgaaactaattattttcatttgaaataaatacaaccaaaagtaaaataccatttgtggaatactaacatgacaat |
41292763 |
T |
|
| Q |
172 |
tgcaattgcctgtttaccaccccaacacagctggaataaaaatcatagccacgggcttgtatcttttgctcatctttattgctttttctataaagta |
268 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41292764 |
tgcaattgcctgtttaccaccccaacacagctggaataaaaatcatagccacgggcttgtatcttttgctcatctttattgctttttctataaagta |
41292860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University