View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9186_low_10 (Length: 727)
Name: NF9186_low_10
Description: NF9186
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9186_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 642; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 642; E-Value: 0
Query Start/End: Original strand, 20 - 714
Target Start/End: Original strand, 40842882 - 40843576
Alignment:
| Q |
20 |
taagtttcatcttgaggcgctgaaccgagacggtttatggaagagtgttgtaaatggcaccacaattggatatcagaggttgtcgatgtttccaaaacca |
119 |
Q |
| |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
40842882 |
taagtttcatcttgaggtgctgaaccgagacggtttatggaagagtgttgtaaatggcaccacaattggatatcagaggttgtcgatgtttccgaaacca |
40842981 |
T |
|
| Q |
120 |
aaatctcagtatttgaagctaattgttgacaagtcaggggcagaacctttgatatcaaacttaggaatctacatggatccatttacagttttgactaagg |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
40842982 |
aaatctcagtatttgaagctaattgttgacaagtcaggggcagaacctttgatatcaaacttaggaatctacatggatccaattacagttttgactaagg |
40843081 |
T |
|
| Q |
220 |
acatgcatgataaaaaattaggtacataattcaatggaacccaagtgctacaatgtaaactttgatgtcgttgatttgtttgtaattataatattcgaat |
319 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40843082 |
gcatgcatgataaaaaattaggtacataattcaatggaacccaagtgctacaatgtaaactttgatgtcgttgatttgtttgtaattataatattcgaat |
40843181 |
T |
|
| Q |
320 |
ttttgttaaaaggtgtgtccacgtctgattttcctatcctttataattcttcaagtatggagtcaaccatgaatagcatgacctaatgaattgtttgaga |
419 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40843182 |
tttttttaaaaggtgtgtccacgtctgattttcctatcctttataattcttcaagtgtggagtcaaccatgaatagcatgacctaatgaattgtttgaga |
40843281 |
T |
|
| Q |
420 |
atttaagagatagtagaaggcaaaaatgccaagaatttgagagtgacttggggaaaaacaaatgagttttattcatcattccaatgtttacaaggaaatg |
519 |
Q |
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| T |
40843282 |
atttaagagatagtagaaggcaaaaatgccaagaatttgagagtgacttggggaaaaacaaatgagttttattcatcattccaatgtttacaaggaaatg |
40843381 |
T |
|
| Q |
520 |
ccattaatatttatacaacaagaatgtgattttggttttgtgctgagtgcagtttcccttgcatccaatcttgtaacatctgaagtgcaacttttggttg |
619 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40843382 |
ccattaatgtttatacaacaagaatgtgattttggttttgtgctgagtgcagtttcccttgcatccaatcttgtaacatctgaagtgcaacttttggttg |
40843481 |
T |
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| Q |
620 |
atccataggaaccatgtgaccagcctctttcacctattgttccnnnnnnntatatatagttaaatacaagcgaaccaatagctacaaaacaccaa |
714 |
Q |
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| T |
40843482 |
atccataggaaccatgtgaccagcctctttcacctattgttccaaaaaaaaatatatagttaaatacaagcgaaccaatagctacaaaacaccaa |
40843576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 262 - 662
Target Start/End: Original strand, 40838405 - 40838810
Alignment:
| Q |
262 |
aagtgctacaatgtaaactttgatgtcgttgatttgtttgtaattataatattcgaatttttgttaaaaggtgtgtccacgtctgattttcctatccttt |
361 |
Q |
| |
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||||||||||||||||||||||||||||| ||||||||||||||| ||| ||| ||| | | ||||||||||||||||||| ||||||||||| ||| |
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| T |
40838405 |
aagtgctacaatgtaaactttgatgtcgtcgatttgtttgtaattgtaaaatttgaaaatattttaaaaggtgtgtccacgttcgattttcctattgttt |
40838504 |
T |
|
| Q |
362 |
ataattcttcaagtatggagtcaaccatgaatagcatgacctaatgaattgtttgagaatttaagagatagtagaaggcaaaaatgccaagaatttgaga |
461 |
Q |
| |
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||||| |||||||| |||||||||||||||||||||||| |||||| |||||| |||||||||||||||| |||||| |||||||||||||||||||||| |
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| T |
40838505 |
ataat-cttcaagtgtggagtcaaccatgaatagcatgagctaatggattgtt-gagaatttaagagataatagaag-caaaaatgccaagaatttgaga |
40838601 |
T |
|
| Q |
462 |
gtgacttggggaaaaacaaatgagttttattcatcattccaatgtttacaaggaaatgccattaatatttatacaacaagaatgtgattttggttttgtg |
561 |
Q |
| |
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||| || |||||||||||||| ||||||||||| ||||||||||| ||||||||||| ||||||| |||| |||||||||||||||||||||||||||| |
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| T |
40838602 |
gtggctcagggaaaaacaaatgtgttttattcattattccaatgttcacaaggaaatgacattaatgtttagacaacaagaatgtgattttggttttgtg |
40838701 |
T |
|
| Q |
562 |
ctgagtg--------cagtttcccttgcatccaatcttgtaacatctgaagtgcaacttttggttgatccataggaaccatgtgaccagcctctttcacc |
653 |
Q |
| |
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||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
40838702 |
ctgagtgcatcatatcagtttcccttgcatccattcttgtaacatctgaagtgcaacttttggttgatccataggaaccatgtgaccagcctctttcaac |
40838801 |
T |
|
| Q |
654 |
tattgttcc |
662 |
Q |
| |
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||||||||| |
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| T |
40838802 |
tattgttcc |
40838810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 158; E-Value: 1e-83
Query Start/End: Original strand, 20 - 265
Target Start/End: Original strand, 40838129 - 40838374
Alignment:
| Q |
20 |
taagtttcatcttgaggcgctgaaccgagacggtttatggaagagtgttgtaaatggcaccacaattggatatcagaggttgtcgatgtttccaaaacca |
119 |
Q |
| |
|
|||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |||| | |
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| T |
40838129 |
taagtttcatctggaggcattgaaccgagacggtttatggaagagtgttgtaaatggcaccacaattggatatcagaggctgttactgtttccgaaacta |
40838228 |
T |
|
| Q |
120 |
aaatctcagtatttgaagctaattgttgacaagtcaggggcagaacctttgatatcaaacttaggaatctacatggatccatttacagttttgactaagg |
219 |
Q |
| |
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||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| ||||||||||||| |||| ||| |||||||||||| | ||| |
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| T |
40838229 |
aaatctcagtatttgaagctagttgttgacaagtcaagggcagaacctttgatatcttacttaggaatctatttggacccagttacagttttgagtgagg |
40838328 |
T |
|
| Q |
220 |
acatgcatgataaaaaattaggtacataattcaatggaacccaagt |
265 |
Q |
| |
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|||||| ||||||||||| ||||||||| ||||||||||||||||| |
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| T |
40838329 |
acatgcctgataaaaaatcaggtacatatttcaatggaacccaagt |
40838374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 569 - 660
Target Start/End: Original strand, 40849288 - 40849379
Alignment:
| Q |
569 |
cagtttcccttgcatccaatcttgtaacatctgaagtgcaacttttggttgatccataggaaccatgtgaccagcctctttcacctattgtt |
660 |
Q |
| |
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| T |
40849288 |
cagtttcccttgcatccaatcttttaacatctgaagtgcagcttttggttgatccataggaaccatgtgaccagcctctttcacctattgtt |
40849379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 414 - 542
Target Start/End: Original strand, 40849090 - 40849215
Alignment:
| Q |
414 |
ttgagaatttaagagatagtagaaggcaaaaatgccaagaatttgagagtgacttggggaaaaacaaatgagttttattcatcattccaatgtttacaag |
513 |
Q |
| |
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|||||||||||||| | ||||| || |||||||||||| || ||||| ||||||||||||||| ||||| ||||||||||| |||||||||| ||||| |
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| T |
40849090 |
ttgagaatttaagaaaaagtaggag-caaaaatgccaaaaaattgag--tgacttggggaaaaagaaatgtattttattcatccttccaatgttcacaag |
40849186 |
T |
|
| Q |
514 |
gaaatgccattaatatttatacaacaaga |
542 |
Q |
| |
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|||||||||||||| | ||||||| |||| |
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| T |
40849187 |
gaaatgccattaatgtgtatacaataaga |
40849215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000004; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 594 - 634
Target Start/End: Complemental strand, 21146938 - 21146898
Alignment:
| Q |
594 |
aacatctgaagtgcaacttttggttgatccataggaaccat |
634 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||| ||||| |
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| T |
21146938 |
aacatctgaagtgcagcttttggttgatccatagggaccat |
21146898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 594 - 658
Target Start/End: Complemental strand, 21151539 - 21151475
Alignment:
| Q |
594 |
aacatctgaagtgcaacttttggttgatccataggaaccatgtgaccagcctctttcacctattg |
658 |
Q |
| |
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|||||||| | |||| ||||||||||||||||||| ||||| || ||||| || ||||||||||| |
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| T |
21151539 |
aacatctgtaatgcagcttttggttgatccatagggaccatatgtccagcatcattcacctattg |
21151475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 594 - 633
Target Start/End: Complemental strand, 21126844 - 21126805
Alignment:
| Q |
594 |
aacatctgaagtgcaacttttggttgatccataggaacca |
633 |
Q |
| |
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||||||||||||||| ||||||||||||||||||| |||| |
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| T |
21126844 |
aacatctgaagtgcagcttttggttgatccatagggacca |
21126805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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