View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9186_low_16 (Length: 434)

Name: NF9186_low_16
Description: NF9186
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9186_low_16
NF9186_low_16
[»] chr2 (2 HSPs)
chr2 (13-333)||(18031190-18031506)
chr2 (383-423)||(18031100-18031140)
[»] chr4 (1 HSPs)
chr4 (158-321)||(55156474-55156642)
[»] chr3 (4 HSPs)
chr3 (159-333)||(29642020-29642198)
chr3 (239-289)||(4803977-4804027)
chr3 (242-289)||(10535703-10535750)
chr3 (122-156)||(48101527-48101561)
[»] chr7 (2 HSPs)
chr7 (258-327)||(22002453-22002522)
chr7 (13-138)||(22002144-22002269)
[»] chr8 (2 HSPs)
chr8 (233-329)||(32309433-32309529)
chr8 (16-153)||(32309130-32309266)
[»] chr6 (5 HSPs)
chr6 (233-329)||(33364663-33364759)
chr6 (16-153)||(33364360-33364496)
chr6 (121-156)||(22208490-22208525)
chr6 (114-156)||(16592721-16592763)
chr6 (104-154)||(33164133-33164183)
[»] chr1 (7 HSPs)
chr1 (233-329)||(30330131-30330227)
chr1 (16-153)||(30330394-30330530)
chr1 (242-289)||(25626139-25626186)
chr1 (122-156)||(9934245-9934279)
chr1 (104-154)||(24208117-24208167)
chr1 (104-154)||(45027897-45027947)
chr1 (104-154)||(45032745-45032795)
[»] scaffold0009 (1 HSPs)
scaffold0009 (242-289)||(89640-89687)


Alignment Details
Target: chr2 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 13 - 333
Target Start/End: Complemental strand, 18031506 - 18031190
Alignment:
Q  13 cagagacacccaaagactttaagttgagaattggagggacatttttggttaaaaaattgtatttggtgtttgaagagctaattgtttggttggaagaata 112  Q
    ||||||||||  ||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||     |||||||||    
T  18031506 cagagacaccagaagactttaagttgagaataggagggacgtttttggtaaaaaaattgtatttggtgtttgaagagctaattgtt-----ggaagaata 18031412  T
Q  113 attaacaaataagtagccatatgaagagcatgatgccaaaatgatgtgaggtgtgggtacaagaaaactgaaagctcattccattatgtttacattatga 212  Q
    |||||||||||||||| |||||||||||||||||| ||||| ||||||||||||||| ||||||||| || |||||||||||||||| ||||||||||||    
T  18031411 attaacaaataagtagtcatatgaagagcatgatgtcaaaaagatgtgaggtgtggggacaagaaaattggaagctcattccattatatttacattatga 18031312  T
Q  213 aaagaa-tattgtcatattgttttctgttatcacgttgaaaacattttatatctctttcaaattgtgttttaatgtgattaagaaaatgaagaaaagtgg 311  Q
    |||||| |||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  18031311 aaagaagtattgtcatattcttttctgttatcacattgaaaacattttatatctcttttaaattgtgttttaatgtgattaagaaaatgaagaaaagtgg 18031212  T
Q  312 aataagcttgagatttatgtgc 333  Q
    ||||||||||||||||||||||    
T  18031211 aataagcttgagatttatgtgc 18031190  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 383 - 423
Target Start/End: Complemental strand, 18031140 - 18031100
Alignment:
Q  383 gagtaacgatgaccaccaggaccaagagttgctgatgtcca 423  Q
    |||||||||||||||||| |||||||||||| |||||||||    
T  18031140 gagtaacgatgaccaccatgaccaagagttgttgatgtcca 18031100  T

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Target: chr4 (Bit Score: 84; Significance: 9e-40; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 158 - 321
Target Start/End: Complemental strand, 55156642 - 55156474
Alignment:
Q  158 gtgaggtgtgggtacaagaaaactgaaagctcattccattatgtttaca----ttatgaaaagaa-tattgtcatattgttttctgttatcacgttgaaa 252  Q
    |||||||||| | ||||||||||   |||||||||||||| ||||||||    ||||  |||||| |||||||||||| ||||| |||||||| ||||||    
T  55156642 gtgaggtgtgaggacaagaaaaccagaagctcattccattttgtttacagaaattatagaaagaagtattgtcatattcttttccgttatcacattgaaa 55156543  T
Q  253 acattttatatctctttcaaattgtgttttaatgtgattaagaaaatgaagaaaagtggaataagcttg 321  Q
    |||||||||||||||||||||||||||||||||||||||  |||||||||||||| |||||||| ||||    
T  55156542 acattttatatctctttcaaattgtgttttaatgtgattgcgaaaatgaagaaaaatggaataaacttg 55156474  T

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Target: chr3 (Bit Score: 83; Significance: 4e-39; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 159 - 333
Target Start/End: Complemental strand, 29642198 - 29642020
Alignment:
Q  159 tgaggtgtgggtacaagaaaactgaaagctcattccattatgtttaca----ttatgaaaagaata-ttgtcatattgttttctgttatcacgttgaaaa 253  Q
    ||||||||| | |||||||||||| |||||| ||||||| ||||||||    ||||| |||||| | |||||||||| ||||| |||||||| |||||||    
T  29642198 tgaggtgtgaggacaagaaaactggaagctc-ttccattttgtttacaaagattatggaaagaagaattgtcatattattttccgttatcacattgaaaa 29642100  T
Q  254 cattttatatctctttcaaattgtgttttaatgtgattaagaaaatgaagaaaagtggaataagcttgagatttatgtgc 333  Q
    |||| ||||||||||| |||||||||||||||||||||  |||||| ||||||||||||| ||||||||||||| |||||    
T  29642099 cattgtatatctcttttaaattgtgttttaatgtgattgcgaaaataaagaaaagtggaaaaagcttgagatttgtgtgc 29642020  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 239 - 289
Target Start/End: Original strand, 4803977 - 4804027
Alignment:
Q  239 ttatcacgttgaaaacattttatatctctttcaaattgtgttttaatgtga 289  Q
    ||||||| ||||||||||||||| || | ||||||||||||||||||||||    
T  4803977 ttatcacattgaaaacattttatttcacgttcaaattgtgttttaatgtga 4804027  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 242 - 289
Target Start/End: Original strand, 10535703 - 10535750
Alignment:
Q  242 tcacgttgaaaacattttatatctctttcaaattgtgttttaatgtga 289  Q
    |||| ||||||||||||||| || | ||||||||||||||||||||||    
T  10535703 tcacattgaaaacattttatttcacgttcaaattgtgttttaatgtga 10535750  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 122 - 156
Target Start/End: Original strand, 48101527 - 48101561
Alignment:
Q  122 taagtagccatatgaagagcatgatgccaaaatga 156  Q
    ||||||||||| |||||||||||||||||||||||    
T  48101527 taagtagccatttgaagagcatgatgccaaaatga 48101561  T

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Target: chr7 (Bit Score: 54; Significance: 7e-22; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 258 - 327
Target Start/End: Original strand, 22002453 - 22002522
Alignment:
Q  258 ttatatctctttcaaattgtgttttaatgtgattaagaaaatgaagaaaagtggaataagcttgagattt 327  Q
    |||||||||||||||||| ||||||||| |||||| ||||||||| ||||||||||||||||||||||||    
T  22002453 ttatatctctttcaaattttgttttaatttgattaggaaaatgaataaaagtggaataagcttgagattt 22002522  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 13 - 138
Target Start/End: Original strand, 22002144 - 22002269
Alignment:
Q  13 cagagacacccaaagactttaagttgagaattggagggacatttttggttaaaaaattgtatttggtgtttgaagagctaattgt-ttggttggaagaat 111  Q
    ||||||||||| | ||||||||| ||||||| ||||| | || ||| | |||  ||| ||| |||| |||| |||||||| || | ||||||||||||||    
T  22002144 cagagacacccgatgactttaagatgagaataggaggaa-atattttgataaggaatcgtagttggggttttaagagctacttatgttggttggaagaat 22002242  T
Q  112 aattaacaaataagtagccatatgaag 138  Q
    | ||||||||||||| | |||||||||    
T  22002243 atttaacaaataagtggtcatatgaag 22002269  T

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Target: chr8 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 233 - 329
Target Start/End: Original strand, 32309433 - 32309529
Alignment:
Q  233 tttctgttatcacgttgaaaacattttatatctctttcaaattgtgttttaatgtgattaagaaaatgaagaaaagtggaataagcttgagatttat 329  Q
    |||| |||||||| |||||||||||| |||||||||||||||||||||||||||||||||  ||| || |||||| |||| | |||||| |||||||    
T  32309433 tttccgttatcacattgaaaacatttaatatctctttcaaattgtgttttaatgtgattacaaaattggagaaaaatggagtgagcttgtgatttat 32309529  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 16 - 153
Target Start/End: Original strand, 32309130 - 32309266
Alignment:
Q  16 agacacccaaagactttaagttgagaattggagggacatttttggttaaaaaattgtatttggtgtttgaagagctaattgtttggttggaagaataatt 115  Q
    ||||| |||||||||||||| ||||| | ||| ||| |||||||| || | ||||||  |||||||||||||||||| ||  ||||| || || ||  ||    
T  32309130 agacatccaaagactttaagatgagagtaggatggagatttttgg-tagagaattgtggttggtgtttgaagagctagtttcttggtgggtaggatgttt 32309228  T
Q  116 aacaaataagtagccatatgaagagcatgatgccaaaa 153  Q
    || | |||||||||||| ||||| || |||||||||||    
T  32309229 aagagataagtagccatttgaagtgcgtgatgccaaaa 32309266  T

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Target: chr6 (Bit Score: 53; Significance: 3e-21; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 233 - 329
Target Start/End: Original strand, 33364663 - 33364759
Alignment:
Q  233 tttctgttatcacgttgaaaacattttatatctctttcaaattgtgttttaatgtgattaagaaaatgaagaaaagtggaataagcttgagatttat 329  Q
    |||| |||||||| |||||||||||| |||||| |||||||||||||||||||||||||| |||| || |||||| |||| | |||||| |||||||    
T  33364663 tttccgttatcacattgaaaacatttaatatctttttcaaattgtgttttaatgtgattacgaaattggagaaaaatggagtgagcttgtgatttat 33364759  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 16 - 153
Target Start/End: Original strand, 33364360 - 33364496
Alignment:
Q  16 agacacccaaagactttaagttgagaattggagggacatttttggttaaaaaattgtatttggtgtttgaagagctaattgtttggttggaagaataatt 115  Q
    ||||| |||||||||||||| ||||| | ||| ||| |||||||| || | ||||||  |||||||||||||||||| ||  ||||| || || ||  ||    
T  33364360 agacaaccaaagactttaagatgagagtaggatggagatttttgg-tagagaattgtggttggtgtttgaagagctagtttcttggtgggtaggatgttt 33364458  T
Q  116 aacaaataagtagccatatgaagagcatgatgccaaaa 153  Q
    || | |||||||||||| ||||| || |||||||||||    
T  33364459 aagagataagtagccatttgaagtgcgtgatgccaaaa 33364496  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 121 - 156
Target Start/End: Original strand, 22208490 - 22208525
Alignment:
Q  121 ataagtagccatatgaagagcatgatgccaaaatga 156  Q
    |||||||||||| |||||||||||||||||||||||    
T  22208490 ataagtagccatttgaagagcatgatgccaaaatga 22208525  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 114 - 156
Target Start/End: Complemental strand, 16592763 - 16592721
Alignment:
Q  114 ttaacaaataagtagccatatgaagagcatgatgccaaaatga 156  Q
    |||||| |||||| ||||| |||||||||||||||||||||||    
T  16592763 ttaacatataagttgccatgtgaagagcatgatgccaaaatga 16592721  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 104 - 154
Target Start/End: Complemental strand, 33164183 - 33164133
Alignment:
Q  104 ggaagaataattaacaaataagtagccatatgaagagcatgatgccaaaat 154  Q
    ||||||||| ||| ||||||||| ||||| ||||| |||||||||||||||    
T  33164183 ggaagaatatttagcaaataagttgccatgtgaagtgcatgatgccaaaat 33164133  T

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Target: chr1 (Bit Score: 53; Significance: 3e-21; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 233 - 329
Target Start/End: Complemental strand, 30330227 - 30330131
Alignment:
Q  233 tttctgttatcacgttgaaaacattttatatctctttcaaattgtgttttaatgtgattaagaaaatgaagaaaagtggaataagcttgagatttat 329  Q
    |||| |||||||| |||||||||||| |||||| |||||||||||||||||||||||||| |||| || |||||| |||| | |||||| |||||||    
T  30330227 tttccgttatcacattgaaaacatttaatatctttttcaaattgtgttttaatgtgattacgaaattggagaaaaatggagtgagcttgtgatttat 30330131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 16 - 153
Target Start/End: Complemental strand, 30330530 - 30330394
Alignment:
Q  16 agacacccaaagactttaagttgagaattggagggacatttttggttaaaaaattgtatttggtgtttgaagagctaattgtttggttggaagaataatt 115  Q
    ||||| |||||||||||||| ||||| | ||| ||| |||||||| || | ||||||  |||||||||||||||||| ||  ||||| || || ||  ||    
T  30330530 agacagccaaagactttaagatgagagtaggatggagatttttgg-tagagaattgtggttggtgtttgaagagctagtttcttggtgggtaggatgttt 30330432  T
Q  116 aacaaataagtagccatatgaagagcatgatgccaaaa 153  Q
    || | |||||||||||| ||||| || |||||||||||    
T  30330431 aagagataagtagccatttgaagtgcgtgatgccaaaa 30330394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 242 - 289
Target Start/End: Original strand, 25626139 - 25626186
Alignment:
Q  242 tcacgttgaaaacattttatatctctttcaaattgtgttttaatgtga 289  Q
    |||| ||||||||||||||| || | ||||||||||||||||||||||    
T  25626139 tcacattgaaaacattttatttcacgttcaaattgtgttttaatgtga 25626186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 122 - 156
Target Start/End: Original strand, 9934245 - 9934279
Alignment:
Q  122 taagtagccatatgaagagcatgatgccaaaatga 156  Q
    ||||||||||| |||||||||||||||||||||||    
T  9934245 taagtagccatttgaagagcatgatgccaaaatga 9934279  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 104 - 154
Target Start/End: Complemental strand, 24208167 - 24208117
Alignment:
Q  104 ggaagaataattaacaaataagtagccatatgaagagcatgatgccaaaat 154  Q
    ||||||||| ||| ||||||||| ||||| ||||| |||||||||||||||    
T  24208167 ggaagaatatttagcaaataagttgccatgtgaagtgcatgatgccaaaat 24208117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 104 - 154
Target Start/End: Complemental strand, 45027947 - 45027897
Alignment:
Q  104 ggaagaataattaacaaataagtagccatatgaagagcatgatgccaaaat 154  Q
    ||||||||| ||| ||||||||| ||||| ||||| |||||||||||||||    
T  45027947 ggaagaatatttagcaaataagttgccatgtgaagtgcatgatgccaaaat 45027897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 104 - 154
Target Start/End: Complemental strand, 45032795 - 45032745
Alignment:
Q  104 ggaagaataattaacaaataagtagccatatgaagagcatgatgccaaaat 154  Q
    ||||||||| ||| ||||||||| ||||| ||||| |||||||||||||||    
T  45032795 ggaagaatatttagcaaataagttgccatgtgaagtgcatgatgccaaaat 45032745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 242 - 289
Target Start/End: Complemental strand, 89687 - 89640
Alignment:
Q  242 tcacgttgaaaacattttatatctctttcaaattgtgttttaatgtga 289  Q
    |||| ||||||||||||||| || | ||||||||||||||||||||||    
T  89687 tcacattgaaaacattttatttcacgttcaaattgtgttttaatgtga 89640  T

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