View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9186_low_19 (Length: 427)
Name: NF9186_low_19
Description: NF9186
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9186_low_19 |
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Alignment Details
Target: chr7 (Bit Score: 368; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 18 - 413
Target Start/End: Complemental strand, 40506509 - 40506114
Alignment:
| Q |
18 |
atagtaattaaagttctctatttttcaaagatcctctaaaatgcgacatgtttttcgttcgttagtcatagttatatcagtgtatttataggaagggtgt |
117 |
Q |
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| T |
40506509 |
atagtaattaaagttctctatttttcaaagatcctctaaaatgcgacgtgtttttcgttcgttagtcatagttatatcagtgtatttataggaagggtgt |
40506410 |
T |
|
| Q |
118 |
tagttccagtggatcttctgcctacttaattagatgagcctgtttagcttgttgcataagttagttgttgattcagttataacttactttgtaaaaggat |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40506409 |
tagttccagtggatcttctgcctacttaattagatgagcctatttagcttgttgcataagttagttgttgattcagttataacttactttgtaaaaggat |
40506310 |
T |
|
| Q |
218 |
agtgtgagatacatttcatagaatcattgatcaagagacaaaatacagtgatttccttcctagaaagtaatctgcatgatcatcgtgcagaggttgtagg |
317 |
Q |
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| T |
40506309 |
aatgtgagatacatttcatagaatcattgatcaagagacaaaatacagtgatttccttcctagaaagtaatctgcatgatcatcgtgcagaggttgtagg |
40506210 |
T |
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| Q |
318 |
attcaaattggtatgaatctcaataaatcaatgcactttcgtctgtctactttgtgcaatcttttattctgcgaatttcagtttctatttcaatcc |
413 |
Q |
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| T |
40506209 |
attcaaattgttatgaatctcgataaatcaatgcacgttcgtctgtctactttgtgcaatcttttattccgcgaatttcagtttctatttcaatcc |
40506114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 134 - 413
Target Start/End: Complemental strand, 22138884 - 22138605
Alignment:
| Q |
134 |
tctgcctacttaattagatgagcctgtttagcttgttgcataagttagttgttgattcagttataacttactttgtaaaaggatagtgtgagatacattt |
233 |
Q |
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| T |
22138884 |
tctgcctacttaattagatgagcctatttagcttgttgcataagttagttgttgattcagttataacttactttgtaaaaggataatgtgagatacattt |
22138785 |
T |
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| Q |
234 |
catagaatcattgatcaagagacaaaatacagtgatttccttcctagaaagtaatctgcatgatcatcgtgcagaggttgtaggattcaaattggtatga |
333 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
22138784 |
catagaatcattgatcaagagacaaaatacagtgatttccttcctanaaagtaatctgcatgatcatcgtgcagaggttgtaggattcaaattgttatga |
22138685 |
T |
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| Q |
334 |
atctcaataaatcaatgcactttcgtctgtctactttgtgcaatcttttattctgcgaatttcagtttctatttcaatcc |
413 |
Q |
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| T |
22138684 |
atctcgataaatcaatgcacgttcgtctgtctactttgtgcaatcttttattccgcgaatttcagtttctatttcaatcc |
22138605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 267
Target Start/End: Original strand, 50746363 - 50746400
Alignment:
| Q |
230 |
atttcatagaatcattgatcaagagacaaaatacagtg |
267 |
Q |
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|||||||||||||||||||||||||| |||||| |||| |
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| T |
50746363 |
atttcatagaatcattgatcaagagagaaaatagagtg |
50746400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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