View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9186_low_21 (Length: 421)
Name: NF9186_low_21
Description: NF9186
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9186_low_21 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 397; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 1 - 421
Target Start/End: Complemental strand, 2017233 - 2016814
Alignment:
| Q |
1 |
agtagagaaaccacatgcccgagtaaaatcactcctgttccaatccacttaaaaatcgaatatcaaacctttccaacaaaattacatctacaaaacaaaa |
100 |
Q |
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| T |
2017233 |
agtagagaaaccacatgcccgagtaaaatcactcatgttccaatccacttaaaaatcgaatatcaaacctttccaacaaaattacatctacaaaacaaa- |
2017135 |
T |
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| Q |
101 |
ttatcgtcatcatctatcaatccagcttattcttttgctgttaatgatgttgtaagtttatcaatattggcatataaccattctgtgtaaaaatttggct |
200 |
Q |
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| T |
2017134 |
ttatcgtcatcatctatcaatccagcttattcttttgctgttaatgatgttgtaagtttatcaatattggtatataaccattctgtgtaaaaatttggct |
2017035 |
T |
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| Q |
201 |
ctgaggaatttatcaatgtgagtagaagacagacaagttaacattgcagttaatttgcaccaacaaatgagatatttgaaatagaatgcaaacaacatgg |
300 |
Q |
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| T |
2017034 |
ctgaggaatttatcaatgtgagtagaagacagacaagttaacattgcagttaatttgcaccaacaaatgagatatttgaaacagaatgcaaacaacatgg |
2016935 |
T |
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| Q |
301 |
cgaagccttaaaccttacaccaagtcattaacatatccgaaatgtagcaaattagaattcaaaatccgacttagttgcattgcatgcattgaaccaaaga |
400 |
Q |
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| T |
2016934 |
cgaagccttaaaccttacaccaagtcattaacatatccgaaatgtagcaaattagaattcaaaatccgacttagttgcattgtatgcattgaaccaaaga |
2016835 |
T |
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| Q |
401 |
tgtgttgaatgatgcttactt |
421 |
Q |
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| T |
2016834 |
tgtgttgaatgatgcttactt |
2016814 |
T |
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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 98
Target Start/End: Original strand, 35752640 - 35752706
Alignment:
| Q |
28 |
atcactcctgttccaatccacttaaaaatcgaatatcaaacctttccaacaaaattacatctacaaaacaa |
98 |
Q |
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| T |
35752640 |
atcactcacgttccgatccacttaaaaattgaatatcaaatctttccgacaa----acatctacaaaacaa |
35752706 |
T |
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