View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9186_low_23 (Length: 365)

Name: NF9186_low_23
Description: NF9186
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9186_low_23
NF9186_low_23
[»] chr1 (11 HSPs)
chr1 (1-349)||(960371-960719)
chr1 (1-349)||(942410-942758)
chr1 (1-349)||(971680-972028)
chr1 (1-349)||(949399-949747)
chr1 (4-349)||(936490-936835)
chr1 (4-349)||(419523-419865)
chr1 (4-349)||(975296-975638)
chr1 (27-349)||(909740-910056)
chr1 (14-348)||(924274-924602)
chr1 (14-131)||(916434-916551)
chr1 (291-348)||(916223-916280)
[»] scaffold0312 (1 HSPs)
scaffold0312 (4-349)||(10706-11048)


Alignment Details
Target: chr1 (Bit Score: 301; Significance: 1e-169; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 349
Target Start/End: Complemental strand, 960719 - 960371
Alignment:
Q  1 gatgtgacaaataggaacagtcccaggttgaactttaagcacatgaaaagccaaatgtttaggattccattgtgatgtatcagtgtgacaaacaacaata 100  Q
    |||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| |||||    
T  960719 gatgtgacaaataggaacagtccctggttgaactttaagcacataaaaagccaaatgtttaggattccattctgatgtatcagtgtgacaaacagcaata 960620  T
Q  101 gttttaaccatgtttccatcaacaccttccaaggacacagtgtaaacttcagttgaatcagttttatgacagtaaaaaactgcataagggtaattctctt 200  Q
    |||||||||||||||||||||||||||||||| | ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  960619 gttttaaccatgtttccatcaacaccttccaatggcacagagtaaacttcagttgaatcagttttatgacagtaaaaaactgcataagggtaattctctt 960520  T
Q  201 tgtgacaaacaatacttttgttcttctcacccaatttcttcactccttttgctataacatattgttgcaaaccattactatttttatccacttctgtgga 300  Q
    ||||||| |||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||    
T  960519 tgtgacacacaatagttttgttcttctcacccaatttcttcactccttttgctattacatattgttgcaaaccattactatttttatccacttctgttga 960420  T
Q  301 aatagcttcaacattgtttccgagtttcgaaatagtgaaatcaaccata 349  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||    
T  960419 aacagcttcaacattgtttccgagtttcgaaatagtgaaatcaaccata 960371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 1 - 349
Target Start/End: Complemental strand, 942758 - 942410
Alignment:
Q  1 gatgtgacaaataggaacagtcccaggttgaactttaagcacatgaaaagccaaatgtttaggattccattgtgatgtatcagtgtgacaaacaacaata 100  Q
    |||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| |||||    
T  942758 gatgtgacaaataggaacagtccctggttgaactttaagcacataaaaagccaaatgtttaggattccattctgatgtatcagtgtgacaaacagcaata 942659  T
Q  101 gttttaaccatgtttccatcaacaccttccaaggacacagtgtaaacttcagttgaatcagttttatgacagtaaaaaactgcataagggtaattctctt 200  Q
    |||||||||||||||||||||||||||||||| | ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  942658 gttttaaccatgtttccatcaacaccttccaatggcacagagtaaacttcagttgaatcagttttatgacagtaaaaaactgcataagggtaattctctt 942559  T
Q  201 tgtgacaaacaatacttttgttcttctcacccaatttcttcactccttttgctataacatattgttgcaaaccattactatttttatccacttctgtgga 300  Q
    ||||||| |||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||    
T  942558 tgtgacacacaatagttttgttcttctcacccaatttcttcactccttttgctattacatattgttgcaaaccattactatttttatccacttctgttga 942459  T
Q  301 aatagcttcaacattgtttccgagtttcgaaatagtgaaatcaaccata 349  Q
    || |||||||||||||||||||||||||||||| |||||||||||||||    
T  942458 aacagcttcaacattgtttccgagtttcgaaatggtgaaatcaaccata 942410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 1 - 349
Target Start/End: Complemental strand, 972028 - 971680
Alignment:
Q  1 gatgtgacaaataggaacagtcccaggttgaactttaagcacatgaaaagccaaatgtttaggattccattgtgatgtatcagtgtgacaaacaacaata 100  Q
    |||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| |||||    
T  972028 gatgtgacaaataggaacagtccctggttgaactttaagcacataaaaagccaaatgtttaggattccattctgatgtatcagtgtgacaaacagcaata 971929  T
Q  101 gttttaaccatgtttccatcaacaccttccaaggacacagtgtaaacttcagttgaatcagttttatgacagtaaaaaactgcataagggtaattctctt 200  Q
    |||||||||||||||||||||||||||||||| | ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  971928 gttttaaccatgtttccatcaacaccttccaatggcacagagtaaacttcagttgaatcagttttatgacagtaaaaaactgcataagggtaattctctt 971829  T
Q  201 tgtgacaaacaatacttttgttcttctcacccaatttcttcactccttttgctataacatattgttgcaaaccattactatttttatccacttctgtgga 300  Q
    ||||||| |||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  971828 tgtgacacacaatagttttgttcttctcacccaatttattcactccttttgctataacatattgttgcaaaccattactatttttatccacttctgttga 971729  T
Q  301 aatagcttcaacattgtttccgagtttcgaaatagtgaaatcaaccata 349  Q
    || |||||||||||||||||||||||||||||| |||||||||||||||    
T  971728 aacagcttcaacattgtttccgagtttcgaaatggtgaaatcaaccata 971680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 1 - 349
Target Start/End: Complemental strand, 949747 - 949399
Alignment:
Q  1 gatgtgacaaataggaacagtcccaggttgaactttaagcacatgaaaagccaaatgtttaggattccattgtgatgtatcagtgtgacaaacaacaata 100  Q
    |||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||    
T  949747 gatgtgacaaataggaacagtccctggttgaactttgagcacttgaaaagccaaatgtttagggttccattctgatgtatcagtgtgacaaacaacaata 949648  T
Q  101 gttttaaccatgtttccatcaacaccttccaaggacacagtgtaaacttcagttgaatcagttttatgacagtaaaaaactgcataagggtaattctctt 200  Q
    |||||||||||||||||||||||||||||||||| ||||| ||||||||| |||||||||||||||||||||||||||||||  ||||||||||||||||    
T  949647 gttttaaccatgtttccatcaacaccttccaagggcacagagtaaacttcggttgaatcagttttatgacagtaaaaaactgtgtaagggtaattctctt 949548  T
Q  201 tgtgacaaacaatacttttgttcttctcacccaatttcttcactccttttgctataacatattgttgcaaaccattactatttttatccacttctgtgga 300  Q
    ||||||| |||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  949547 tgtgacacacaatagttttgttcttctcacccaatttattcactccttttgctataacatattgttgcaaaccattactatttttatccacttctgtgga 949448  T
Q  301 aatagcttcaacattgtttccgagtttcgaaatagtgaaatcaaccata 349  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||    
T  949447 aatagcttcaacattgtttccgagttttgaaatagtgaaatcaaccata 949399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 166; E-Value: 9e-89
Query Start/End: Original strand, 4 - 349
Target Start/End: Complemental strand, 936835 - 936490
Alignment:
Q  4 gtgacaaataggaacagtcccaggttgaactttaagcacatgaaaagccaaatgtttaggattccattgtgatgtatcagtgtgacaaacaacaatagtt 103  Q
    ||||||||  |||||||| ||||||||||| || ||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||| ||| || |    
T  936835 gtgacaaactggaacagttccaggttgaacattgagcacttgaaaagccaaatgtttaggattccattgtgaagtatcagtgtgacacacagcaacagct 936736  T
Q  104 ttaaccatgtttccatcaacaccttccaaggacacagtgtaaacttcagttgaatcagttttatgacagtaaaaaactgcataagggtaattctctttgt 203  Q
    |||||  |  ||||||||||||||||||| | ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  936735 ttaactctacttccatcaacaccttccaaaggcacagagtaaactttagttgaatcagttttatgacagtaaaaaactgcataagggtaactctctttgt 936636  T
Q  204 gacaaacaatacttttgttcttctcacccaatttcttcactccttttgctataacatattgttgcaaaccattactatttttatccacttctgtggaaat 303  Q
    |||| || | |  ||| ||||| || |||||||||||||| |||||||| || ||||||| ||||||  || | || | ||| | ||||||||| ||||     
T  936635 gacacactacagctttattcttttctcccaatttcttcacaccttttgccattacatattcttgcaagtcactgctttcttttttcacttctgttgaaac 936536  T
Q  304 agcttcaacattgtttccgagtttcgaaatagtgaaatcaaccata 349  Q
    |||||| ||||||||||| ||||||||| |||||||||||||||||    
T  936535 agcttcgacattgtttccaagtttcgaagtagtgaaatcaaccata 936490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 4 - 349
Target Start/End: Original strand, 419523 - 419865
Alignment:
Q  4 gtgacaaataggaacagtcccaggttgaactttaagcacatgaaaagccaaatgtttaggattccattgtgatgtatcagtgtgacaaacaacaatagtt 103  Q
    ||||||||  ||||||||||||||||||||||| || || ||||| ||||||||||| || ||||||| |||||||||||||||||| ||| |||||| |    
T  419523 gtgacaaactggaacagtcccaggttgaactttgagtacttgaaatgccaaatgttttgggttccattctgatgtatcagtgtgacacacagcaatagct 419622  T
Q  104 ttaaccatgtttccatcaacaccttccaaggacacagtgtaaacttcagttgaatcagttttatgacagtaaaaaactgcataagggtaattctctttgt 203  Q
    |||||  || |||||||| |||| ||||| | ||||| |||| ||| ||||| ||| ||||| ||||||||||| |||||||||||||||||||||||||    
T  419623 ttaactctgcttccatcagcaccctccaaaggcacagagtaagctttagttgtatctgttttgtgacagtaaaacactgcataagggtaattctctttgt 419722  T
Q  204 gacaaacaatacttttgttcttctcacccaatttcttcactccttttgctataacatattgttgcaaaccattactatttttatccacttctgtggaaat 303  Q
    |||| |||| |  |||||||||||||||||| |||||||||||   ||||||   ||||||||| ||   |||||| | ||| | ||||||||| ||||     
T  419723 gacacacaacagctttgttcttctcacccaacttcttcactccagatgctattgtatattgttgtaa---attactttctttgttcacttctgttgaaac 419819  T
Q  304 agcttcaacattgtttccgagtttcgaaatagtgaaatcaaccata 349  Q
    ||| |||||||| || || ||||| ||| |||||||||||||||||    
T  419820 agcctcaacatttttaccaagtttagaagtagtgaaatcaaccata 419865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 4 - 349
Target Start/End: Complemental strand, 975638 - 975296
Alignment:
Q  4 gtgacaaataggaacagtcccaggttgaactttaagcacatgaaaagccaaatgtttaggattccattgtgatgtatcagtgtgacaaacaacaatagtt 103  Q
    ||||||||  ||||||||||||||||||||||| || || ||||| ||||||||||| || ||||||| |||||||||||||||||| ||| |||||| |    
T  975638 gtgacaaactggaacagtcccaggttgaactttgagtacttgaaatgccaaatgttttgggttccattctgatgtatcagtgtgacacacagcaatagct 975539  T
Q  104 ttaaccatgtttccatcaacaccttccaaggacacagtgtaaacttcagttgaatcagttttatgacagtaaaaaactgcataagggtaattctctttgt 203  Q
    |||||  || |||||||| |||| ||||| | ||||| |||| ||| ||||| ||| ||||| ||||||||||| |||||||||||||||||||||||||    
T  975538 ttaactctgcttccatcagcaccctccaaaggcacagagtaagctttagttgtatctgttttgtgacagtaaaacactgcataagggtaattctctttgt 975439  T
Q  204 gacaaacaatacttttgttcttctcacccaatttcttcactccttttgctataacatattgttgcaaaccattactatttttatccacttctgtggaaat 303  Q
    |||| |||| |  |||||||||||||||||| |||||||||||   ||||||   ||||||||| ||   |||||| | ||| | ||||||||| ||||     
T  975438 gacacacaacagctttgttcttctcacccaacttcttcactccagatgctattgtatattgttgtaa---attactttctttgttcacttctgttgaaac 975342  T
Q  304 agcttcaacattgtttccgagtttcgaaatagtgaaatcaaccata 349  Q
    ||| |||||||| || || ||||| ||| | |||||||||||||||    
T  975341 agcctcaacatttttaccaagtttagaagtcgtgaaatcaaccata 975296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 27 - 349
Target Start/End: Complemental strand, 910056 - 909740
Alignment:
Q  27 gttgaactttaagcacatgaaaagccaaatgtttaggattccattgtgatgtatcagtgtgacaaacaacaatagttttaaccatgtttccatcaacacc 126  Q
    |||||||||| ||||| |||||||||||||||||| |  |||||||||| ||||||| ||| |||| | ||| || ||||||  |  |||||||| ||||    
T  910056 gttgaactttgagcacttgaaaagccaaatgtttaaggctccattgtgaagtatcagagtggcaaatagcaacagctttaactctacttccatcagcacc 909957  T
Q  127 ttccaaggacacagtgtaaacttcagttgaatcagttttatgacagtaaaaaactgcataagggtaattctctttgtgacaaacaatacttttgttcttc 226  Q
    |||||| | ||||| |||||||| ||||| ||| ||||| ||||||||||||||||||||||||||||||  |||||| || ||||     |||   |||    
T  909956 ttccaaaggcacagagtaaactttagttgcatctgttttgtgacagtaaaaaactgcataagggtaattccgtttgtggcacacaaccaaattg---ttc 909860  T
Q  227 tcacccaatttcttcactccttttgctataacatattgttgcaaaccattactatttttatccacttctgtggaaatagcttcaacattgtttccgagtt 326  Q
    || |||| |||||||||||| |||||||| ||||||||||| |||||   ||| | |  ||  |||||||| |||| ||  |||||||||||||| || |    
T  909859 tctcccattttcttcactccgtttgctattacatattgttgtaaacc---actttctccatttacttctgttgaaacagtgtcaacattgtttccaagct 909763  T
Q  327 tcgaaatagtgaaatcaaccata 349  Q
    || || |||||||||||| ||||    
T  909762 tcaaagtagtgaaatcaatcata 909740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 14 - 348
Target Start/End: Complemental strand, 924602 - 924274
Alignment:
Q  14 ggaacagtcccaggttgaactttaagcacatgaaaagccaaatgtttaggattccattgtgatgtatcagtgtgacaaacaacaatagttttaaccatgt 113  Q
    |||||||| |||||||||| ||| || || ||||||||||||||||||||| |||||||||| ||||||| ||| |||| | ||| || ||||||  ||     
T  924602 ggaacagttccaggttgaattttgagtacttgaaaagccaaatgtttaggactccattgtgaagtatcagagtggcaaatagcaacagctttaactttgg 924503  T
Q  114 ttccatcaacaccttccaaggacacagtgtaaacttcagttgaatcagttttatgacagtaaaaaactgcataagggtaattctctttgtgacaaacaat 213  Q
    ||||||||||||||||||  | || |  |||||||| ||||| |     ||| ||||| ||||| |||| ||| || |||| |  |   || || ||||     
T  924502 ttccatcaacaccttccataggcaaatagtaaactttagttgcacgtagtttgtgacaataaaacactgtatatggataatccattggatggcacacaac 924403  T
Q  214 acttttgttcttctcacccaatttcttcactccttttgctataacatattgttgcaaaccattactatttttatccacttctgtggaaatagcttcaaca 313  Q
    | |||||   ||||||||||| ||||| |||||||||||||| | ||||||||| |    || ||| | ||| | ||||||||| |||| ||||||||||    
T  924402 aattttg---ttctcacccaacttcttaactccttttgctattatatattgttgta---tatcactttctttgttcacttctgttgaaacagcttcaaca 924309  T
Q  314 ttgtttccgagtttcgaaatagtgaaatcaaccat 348  Q
    |||||||| || || ||| ||||||||||||||||    
T  924308 ttgtttccaagcttagaagtagtgaaatcaaccat 924274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 14 - 131
Target Start/End: Complemental strand, 916551 - 916434
Alignment:
Q  14 ggaacagtcccaggttgaactttaagcacatgaaaagccaaatgtttaggattccattgtgatgtatcagtgtgacaaacaacaatagttttaaccatgt 113  Q
    |||||||| ||||||||||| || || ||||||||||||||||| || ||| |||||||||| |||||| |||| |||| | ||  |||||||||  ||     
T  916551 ggaacagttccaggttgaaccttgagtacatgaaaagccaaatgcttgggactccattgtgaagtatcattgtggcaaatagcagcagttttaactttgg 916452  T
Q  114 ttccatcaacaccttcca 131  Q
    | ||||||| ||||||||    
T  916451 taccatcaataccttcca 916434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 291 - 348
Target Start/End: Complemental strand, 916280 - 916223
Alignment:
Q  291 cttctgtggaaatagcttcaacattgtttccgagtttcgaaatagtgaaatcaaccat 348  Q
    ||||||| |||| |||||||||||||||||| || || ||| ||||||||||||||||    
T  916280 cttctgttgaaacagcttcaacattgtttccaagcttagaagtagtgaaatcaaccat 916223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0312 (Bit Score: 132; Significance: 2e-68; HSPs: 1)
Name: scaffold0312
Description:

Target: scaffold0312; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 4 - 349
Target Start/End: Complemental strand, 11048 - 10706
Alignment:
Q  4 gtgacaaataggaacagtcccaggttgaactttaagcacatgaaaagccaaatgtttaggattccattgtgatgtatcagtgtgacaaacaacaatagtt 103  Q
    ||||||||  ||||||||||||||||||||||| || || ||||| ||||||||||| || ||||||| |||||||||||||||||| ||| |||||| |    
T  11048 gtgacaaactggaacagtcccaggttgaactttgagtacttgaaatgccaaatgttttgggttccattctgatgtatcagtgtgacacacagcaatagct 10949  T
Q  104 ttaaccatgtttccatcaacaccttccaaggacacagtgtaaacttcagttgaatcagttttatgacagtaaaaaactgcataagggtaattctctttgt 203  Q
    |||||  || |||||||| |||| ||||| | ||||| |||| ||| ||||| ||| ||||| ||||||||||| |||||||||||||||||||||||||    
T  10948 ttaactctgcttccatcagcaccctccaaaggcacagagtaagctttagttgtatctgttttgtgacagtaaaacactgcataagggtaattctctttgt 10849  T
Q  204 gacaaacaatacttttgttcttctcacccaatttcttcactccttttgctataacatattgttgcaaaccattactatttttatccacttctgtggaaat 303  Q
    |||| |||| |  |||||||||||||||||| |||||||||||   ||||||   ||||||||| ||   |||||| | ||| | ||||||||| ||||     
T  10848 gacacacaacagctttgttcttctcacccaacttcttcactccagatgctattgtatattgttgtaa---attactttctttgttcacttctgttgaaac 10752  T
Q  304 agcttcaacattgtttccgagtttcgaaatagtgaaatcaaccata 349  Q
    ||| |||||||| || || ||||| ||| |||||||||||||||||    
T  10751 agcctcaacatttttaccaagtttagaagtagtgaaatcaaccata 10706  T

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