View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9186_low_25 (Length: 345)
Name: NF9186_low_25
Description: NF9186
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9186_low_25 |
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| [»] scaffold0032 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 16 - 337
Target Start/End: Original strand, 16888059 - 16888379
Alignment:
| Q |
16 |
tggacatgaccctctgagataagacatgttttgaaacataacttataaataaaagactcaggaacctcggccgcgctattcccttcacttaaccattacg |
115 |
Q |
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| T |
16888059 |
tggagatgaccctctgagataagacatgttttggaacataacttataaataaaagactcaggaacctcggccgcgctattcccttcacttaaccattacg |
16888158 |
T |
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| Q |
116 |
gtgccctattttcagttctatccctgggctccaatgtattcaaaacacttccttcaggtaattattagtgtcggatgcagcaatgacttttgagatgcag |
215 |
Q |
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| T |
16888159 |
gtgccctattttcagttctatccctgggctccaatgtattcaaaacacttccttcgggtaattattagtgtcggatgcagcaatgacttttgagatgcag |
16888258 |
T |
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| Q |
216 |
tttttcatataaggagttagatcaaaaagctaagacaacacaaaatttatgatttcttttaagacactcccaatttgtataactgtcaaacatgttgctt |
315 |
Q |
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| T |
16888259 |
tttttcatataaggagttagatc-aaaagctaagacaacacaaaatttatgatttcttttaagacactcccaatttgtataactgtcaaacatgttgctt |
16888357 |
T |
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| Q |
316 |
acagattcaatcatgatgtcca |
337 |
Q |
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| T |
16888358 |
acagattcaatcatgatgtcca |
16888379 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0032 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0032
Description:
Target: scaffold0032; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 189 - 330
Target Start/End: Complemental strand, 42480 - 42340
Alignment:
| Q |
189 |
gatgcagcaatgacttttgagatgcagtttttcatataaggagttagatcaaaaagctaagacaacacaaaatttatgatttcttttaagacactcccaa |
288 |
Q |
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| T |
42480 |
gatgcaacaacggcttctgagatgcagtttttcacataaggagataaatc-aaaagccaagacagcataggctttgtgacttcgtttaagacactccaaa |
42382 |
T |
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| Q |
289 |
tttgtataactgtcaaacatgttgcttacagattcaatcatg |
330 |
Q |
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| T |
42381 |
tctctataaccttcaagcatgttgctaacaagttcaatcatg |
42340 |
T |
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