View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9186_low_3 (Length: 1020)
Name: NF9186_low_3
Description: NF9186
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9186_low_3 |
 | |
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| [»] chr7 (7 HSPs) |
| |
|
| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 871; Significance: 0; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 871; E-Value: 0
Query Start/End: Original strand, 10 - 1020
Target Start/End: Complemental strand, 4632595 - 4631573
Alignment:
| Q |
10 |
agtgcctattgatgttgtttcttagtgatttccctatcttctaatacgttttacaaaataattctttattcgatggctacaattttattatttgatattc |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
4632595 |
agtgcctattgatgttgtttcttagtgatttccctatcttctaatacgttttacaaaataattctttattcgatggctacaattttattatttgaaattc |
4632496 |
T |
|
| Q |
110 |
gaatttaggacatcatacattataccatatatttttatctctatctttcatttacaaatttcatctaatcgtccccaaaaaataaattatctaatccatt |
209 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| |||||||||||||| ||||||||| |
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|
| T |
4632495 |
aaatttaggatatcatacattataccatatatttttatctctatttttcatttaaaaatttcatctaatcgtccctaaaaaataaattatttaatccatt |
4632396 |
T |
|
| Q |
210 |
atggatttaaaaactaatacaccaaaataaccacatgaattctttgtttaaatcaaactatatgtgaagtgtctatcg-------catttgctaataaca |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
4632395 |
atggatttaaaaactaatacaccaaaataaccacatttattctttgtttaaatcaaactatatgtgaagtgtctatcggctatcgcatttgctaataaca |
4632296 |
T |
|
| Q |
303 |
aatttttgcgagaattgaccatcannnnnnnatagaaagaa----ttgttcatctttaatggagtctcttatttcaattacatttttgtcatccataaag |
398 |
Q |
| |
|
||| ||||||||||||||| |||| |||||||||| |||||||||||||||||||||||| |||||||||||||| ||||||||||| ||| |
|
|
| T |
4632295 |
aatctttgcgagaattgactatcatttctttatagaaagaaagaattgttcatctttaatggagtctctcatttcaattacattattgtcatccattaag |
4632196 |
T |
|
| Q |
399 |
ttcgaacccaaaactttgcttaagaattctaatccaattccactcataccaaattatttaggtaaacaccatatgattgtcattttgatgttgaaagttc |
498 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
4632195 |
ttcgaatccaaaactttgcttaagaattctaatccaattccactcataccaaattatttaggtaaacaccatttgattgtcattttgatgttgaaagttc |
4632096 |
T |
|
| Q |
499 |
aaacattattttctcatccaatatacacgtt-ccccctcaataaatgcaacttcttgcatgacaaacttcaacaaaaattctttagctatggccaacctc |
597 |
Q |
| |
|
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4632095 |
aaacattattttcccatccaatatacacgtttccccctcaataaatgcaacttcttgcatggcaaacttcaacaaaaattctttagctatggccaacctc |
4631996 |
T |
|
| Q |
598 |
ctaaagaacatagttcctagtaaaatcaccctactgtctagtattttgtttctccttcatcttttgttgttccctctagaggttaacagcttgtatgata |
697 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4631995 |
ctaaagaacatagttcctagtaaaatcaccctactgtctagtaatttgtttctccttcatcttttgttgttccctctagaggttaacagcttgtatgata |
4631896 |
T |
|
| Q |
698 |
ttttagcagtgaattgtggccacttcaacgatactatctttgaaaatcgaacatgggttggggacagggataacaccaaattattctctatcattgaacc |
797 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4631895 |
ttttagcagtgaattgtggccacttcaacgatactatctttgaaaatcgaacatgggttggggacagggataacaccaaattattctctatcattgaacc |
4631796 |
T |
|
| Q |
798 |
acaaaccgaactcccgtctttcaaagccaaagctaatcctaactctgatgctgttaagcgaattcccttcgcctctgcacgtatttctttttcgaatttc |
897 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4631795 |
acaaaccgaactcccgtctttcaaagccaaagctaatcctaactctgatgctgttaagcgaattcccttcgcctctgcacgtatttctttttcgaatttc |
4631696 |
T |
|
| Q |
898 |
acattctccttttcttccatcaccaatggccctatttttcttcgcctctatttttacccaacatcgtattcgtatcaacacattgaaacctccaacgccc |
997 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4631695 |
acattctccttttcttccatcaccaatggccctatttttcttcgcctctatttttatccaacatcgtattcgtatcaacacattgaaacctccaacgccc |
4631596 |
T |
|
| Q |
998 |
tcttcacagtcaaagtaggaacc |
1020 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
4631595 |
tcttcacagtcaaagtaggaacc |
4631573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 393 - 1020
Target Start/End: Complemental strand, 4668194 - 4667581
Alignment:
| Q |
393 |
ataaagttcgaacccaaaactttgcttaagaattctaatccaattccactcataccaaatta-tttaggtaaacacc----atatgattgtcattttgat |
487 |
Q |
| |
|
|||||||| |||||||||||||||||||| |||||||| |||||||| |||||||| || ||| |||||||||| || ||||||| |||||||| |
|
|
| T |
4668194 |
ataaagttagaacccaaaactttgcttaaaaattctaa----attccact-ataccaaaataatttgggtaaacaccgtgtatttgattgtaattttgat |
4668100 |
T |
|
| Q |
488 |
gttgaaagttcaaacattattttctcatccaatatacacgttccccctcaataaatgcaacttcttgcatgacaaacttcaacaaaaattctttagctat |
587 |
Q |
| |
|
|||||||||| |||||||||||| | ||||||| |||||||| |||||||||||||||||||||||||| || ||||| ||||||||||| ||| ||| |
|
|
| T |
4668099 |
gttgaaagttggaacattattttcccgtccaata--cacgttccacctcaataaatgcaacttcttgcatggcatacttcgacaaaaattctctagttat |
4668002 |
T |
|
| Q |
588 |
ggccaacctcctaaagaacatagttcctagtaaaatcaccctactgtctagtattttgtttctccttcatcttttgttgttccctctagaggttaacagc |
687 |
Q |
| |
|
||||||| |||||||||||||||||||||| |||| ||| ||||||||| || |||||||||||||||||| | |||||| ||||| | |||||||||| |
|
|
| T |
4668001 |
ggccaactccctaaagaacatagttcctagtgaaataaccttactgtctattactttgtttctccttcatctatcgttgtttcctctcgcggttaacagc |
4667902 |
T |
|
| Q |
688 |
ttgtatgatattttagcagtgaattgtggccacttcaacgatactatctttgaaaatcgaacatgggttggggacagggataacaccaaattattctcta |
787 |
Q |
| |
|
| |||||| ||||||| || |||||||| || | || ||||||||||||||||||||||| ||||||||||||| ||| | |||||| | |||||| |
|
|
| T |
4667901 |
tcatatgatgttttagctgtaaattgtggtcattccatagatactatctttgaaaatcgaacctgggttggggacaatgatgataccaaactcttctctg |
4667802 |
T |
|
| Q |
788 |
tcattgaaccacaaaccgaactcccgtctttcaaagccaaagctaatcctaactctgatgctgttaagcgaattcccttcgcctctgcacgtatttcttt |
887 |
Q |
| |
|
||||||||||||||| || ||| | ||||||||||||||||||||||||||| ||||||| | ||||| || ||||||||||||| || || |
|
|
| T |
4667801 |
tcattgaaccacaaa------tcatatctgtaaaagccaaagctaatcctaactctgattctgttaatcatattccattttcctctgcacgtatatcatt |
4667708 |
T |
|
| Q |
888 |
ttcgaatttcacattctccttttcttccatcaccaatggccctatttttcttcgcctctatttttacccaacatcgtattcgtatcaacacattgaaacc |
987 |
Q |
| |
|
||| ||||||||||||| |||||| | |||| | ||||||| |||||||||||||| |||||||||||||| ||||||||| || |||||||| |
|
|
| T |
4667707 |
ttccgatttcacattctcattttctccgatcaatagtggccctgtttttcttcgcctccatttttacccaaca------tcgtatcaaaactttgaaacc |
4667614 |
T |
|
| Q |
988 |
tccaacgccctcttcacagtcaaagtaggaacc |
1020 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| |
|
|
| T |
4667613 |
tccaacgctctcttcacagtcaaagtaggaacc |
4667581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 128; E-Value: 1e-65
Query Start/End: Original strand, 12 - 179
Target Start/End: Complemental strand, 4638855 - 4638688
Alignment:
| Q |
12 |
tgcctattgatgttgtttcttagtgatttccctatcttctaatacgttttacaaaataattctttattcgatggctacaattttattatttgatattcga |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| |||| |||||||||||||| ||||||||| |||||| |
|
|
| T |
4638855 |
tgcctattgatgttgtttcttagtgatttccctatctgctaatacgttttagaaaataattccctatttgatggctacaatttaattatttgaaattcga |
4638756 |
T |
|
| Q |
112 |
atttaggacatcatacattataccatatatttttatctctatctttcatttacaaatttcatctaatc |
179 |
Q |
| |
|
|||||||| || ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
4638755 |
atttaggatatgatacattataccatatatttttatctctatctttcatttacaattttcatctaatc |
4638688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 100; E-Value: 6e-49
Query Start/End: Original strand, 282 - 451
Target Start/End: Complemental strand, 4638625 - 4638455
Alignment:
| Q |
282 |
ctatcgcatttgctaataacaaatttttgcgagaattgaccatcannnnnnn--atagaaagaattgttcatctttaatggagtctcttatttcaattac |
379 |
Q |
| |
|
|||||||||| ||||||||||||| |||| |||||| |||||||| |||||||||||||||||||||||||||||||||| ||| ||||||| |
|
|
| T |
4638625 |
ctatcgcattggctaataacaaatctttgtgagaatagaccatcatttttttttatagaaagaattgttcatctttaatggagtctctcattccaattac |
4638526 |
T |
|
| Q |
380 |
atttttgtcatccataaagttcgaacccaaaactttgcttaagaattctaatccaattccactcataccaaa |
451 |
Q |
| |
|
||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
4638525 |
attttcgtcatccataaagttcgaatccaaaactttgcttaagaattctaatccaattccact-ataccaaa |
4638455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 14 - 179
Target Start/End: Complemental strand, 4669196 - 4669024
Alignment:
| Q |
14 |
cctattgatgttgtttcttagtgatttccctatcttctaatacgtttt-----acaaaataattctttattcgatggctacaattttattatttgatatt |
108 |
Q |
| |
|
||||||||||||||||| |||| ||| |||||| | |||||||||||| ||||||||||| |||||||||| |||||||||||||||| | ||| |
|
|
| T |
4669196 |
cctattgatgttgtttcatagtaattcccctatttcctaatacgttttcatttacaaaataatttcctattcgatggatacaattttattatttaaaatt |
4669097 |
T |
|
| Q |
109 |
cgaatttaggacatcat--acattataccatatatttttatctctatctttcatttacaaatttcatctaatc |
179 |
Q |
| |
|
||||||||||| ||||| | || || || |||||| ||| ||||||||||||||||||| ||| |||||||| |
|
|
| T |
4669096 |
cgaatttaggatatcatgcatataatcccgtatattcttacctctatctttcatttacaattttgatctaatc |
4669024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 198 - 320
Target Start/End: Complemental strand, 4669031 - 4668908
Alignment:
| Q |
198 |
atctaatccattatggatttaaaaactaatacaccaaaataaccacatg-aattctttgtttaaatcaaactatatgtgaagtgtctatcgcatttgcta |
296 |
Q |
| |
|
||||||||||| ||||||||||||| ||||||||| || || || ||| | || ||||||| |||||||| ||||||||||| ||||||||||||| || |
|
|
| T |
4669031 |
atctaatccataatggatttaaaaaataatacaccggaacaagcaaatgtatttttttgttttaatcaaaccatatgtgaagtatctatcgcatttgtta |
4668932 |
T |
|
| Q |
297 |
ataacaaatttttgcgagaattga |
320 |
Q |
| |
|
|| || ||| |||||||||||||| |
|
|
| T |
4668931 |
atgactaatctttgcgagaattga |
4668908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 211 - 378
Target Start/End: Complemental strand, 4668732 - 4668563
Alignment:
| Q |
211 |
tggatttaaaaactaatacaccaaaataaccacatgaattctttgtttaaatcaaactatatgtgaagtgtctatcgcatttgctaataacaaat-tttt |
309 |
Q |
| |
|
|||||||||||| |||||||| | || || || ||| ||| ||||||| |||||||| ||||||||||| |||||||||||| |||| || ||| |||| |
|
|
| T |
4668732 |
tggatttaaaaaataatacacaagaacaagcaaatgtattttttgttttaatcaaaccatatgtgaagtatctatcgcatttattaatgactaatctttt |
4668633 |
T |
|
| Q |
310 |
gcgagaattga-ccatcannnnnnnatagaaagaattgttcatctttaatggagtctcttatttcaatta |
378 |
Q |
| |
|
| ||||||||| || | |||||||||||||||||||||||| |||| ||||||| |||||| |
|
|
| T |
4668632 |
gtgagaattgatcctatatatttttttagaaagaattgttcatctttaatcgagtttcttattccaatta |
4668563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 116; Significance: 2e-58; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 116; E-Value: 2e-58
Query Start/End: Original strand, 664 - 1020
Target Start/End: Original strand, 18924850 - 18925197
Alignment:
| Q |
664 |
ttgttccctctagaggttaacagcttgtatgatattttagcagtgaattgtggccacttcaacgatactatctttgaaaatcgaacatgggttggggaca |
763 |
Q |
| |
|
||||||||||||| ||||||| | ||||||| |||||| ||||||||||||||| || ||||| | |||||||||||||| |||||||| |||| |
|
|
| T |
18924850 |
ttgttccctctagtggttaac---tcttatgataatttagccctgaattgtggccactccatagatacaacatttgaaaatcgaacctgggttggtgaca |
18924946 |
T |
|
| Q |
764 |
gggataacaccaaattattctctatcattgaaccacaaaccgaactcccgtctttcaaagccaaagctaatcctaactctgatgctgttaagcgaattcc |
863 |
Q |
| |
|
|||| |||||||| |||||||||||||||||||||| || ||| | | ||| ||||| ||||| | || |||||||||||| ||||||| | |||||| |
|
|
| T |
18924947 |
tggatgacaccaaactattctctatcattgaaccacagactgaattttcatctatcaaatccaaacccaaccctaactctgattctgttaaccaaattcc |
18925046 |
T |
|
| Q |
864 |
cttcgcctctgcacgtatttctttttcgaatttcacattctccttttcttccatcaccaatggccctatttttcttcgcctctatttttacccaacatcg |
963 |
Q |
| |
|
|| ||||| ||||||||||| ||||| || ||||||||||| ||| ||||| || | ||| ||||||||||||||||||| |||||||||||||| |
|
|
| T |
18925047 |
gtttgcctcagcacgtatttcattttccaacttcacattctcatttccttccgtcgctaatagccctatttttcttcgccttcatttttacccaaca--- |
18925143 |
T |
|
| Q |
964 |
tattcgtatcaacacattgaaacctccaacgccctcttcacagtcaaagtaggaacc |
1020 |
Q |
| |
|
||||||||| || ||||||||| | ||||||||||||| |||||||| |||||| |
|
|
| T |
18925144 |
---tcgtatcaaaactttgaaaccttcgacgccctcttcaccgtcaaagttggaacc |
18925197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 567 - 627
Target Start/End: Original strand, 18924760 - 18924819
Alignment:
| Q |
567 |
caacaaaaattctttagctatggccaacctcctaaagaacatagttcctagtaaaatcacc |
627 |
Q |
| |
|
||||||||||||||||| ||||||||| ||||||||||||||||| || |||||||||| |
|
|
| T |
18924760 |
caacaaaaattctttaga-atggccaactacctaaagaacatagttcttactaaaatcacc |
18924819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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