View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9186_low_30 (Length: 246)

Name: NF9186_low_30
Description: NF9186
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9186_low_30
NF9186_low_30
[»] chr2 (30 HSPs)
chr2 (44-229)||(10393220-10393405)
chr2 (5-47)||(13553143-13553185)
chr2 (7-44)||(11229356-11229393)
chr2 (2-43)||(36435681-36435722)
chr2 (4-44)||(4738604-4738644)
chr2 (4-44)||(5067678-5067718)
chr2 (4-44)||(33296103-33296143)
chr2 (4-44)||(34139070-34139110)
chr2 (4-43)||(5455485-5455524)
chr2 (5-44)||(18508077-18508116)
chr2 (5-44)||(22966785-22966824)
chr2 (4-43)||(39247495-39247534)
chr2 (5-47)||(6884906-6884948)
chr2 (6-44)||(13711060-13711098)
chr2 (4-42)||(26321729-26321767)
chr2 (4-42)||(26321897-26321935)
chr2 (5-43)||(30856807-30856845)
chr2 (5-47)||(35589420-35589462)
chr2 (5-47)||(39449150-39449192)
chr2 (4-45)||(6365184-6365225)
chr2 (2-43)||(9449445-9449486)
chr2 (10-43)||(12600048-12600081)
chr2 (5-46)||(36909876-36909917)
chr2 (4-45)||(37966365-37966406)
chr2 (2-46)||(546415-546459)
chr2 (4-44)||(5167774-5167814)
chr2 (4-48)||(23880090-23880134)
chr2 (4-44)||(34442112-34442152)
chr2 (8-44)||(42283275-42283311)
chr2 (4-44)||(44189826-44189866)
[»] chr7 (24 HSPs)
chr7 (59-221)||(3788261-3788420)
chr7 (6-46)||(25887591-25887631)
chr7 (7-49)||(156017-156059)
chr7 (5-47)||(43079665-43079707)
chr7 (4-45)||(44894505-44894546)
chr7 (5-49)||(25614854-25614898)
chr7 (4-47)||(19426576-19426619)
chr7 (5-44)||(38023457-38023496)
chr7 (4-43)||(42663084-42663123)
chr7 (4-43)||(48866962-48867001)
chr7 (6-44)||(2469702-2469740)
chr7 (6-44)||(22330654-22330692)
chr7 (5-43)||(29763830-29763868)
chr7 (5-47)||(37173007-37173049)
chr7 (6-44)||(37352013-37352051)
chr7 (1-43)||(40717265-40717307)
chr7 (13-43)||(40842405-40842435)
chr7 (5-46)||(10700219-10700260)
chr7 (4-41)||(28596908-28596945)
chr7 (4-44)||(28824502-28824542)
chr7 (4-44)||(31274561-31274601)
chr7 (5-45)||(37899321-37899361)
chr7 (4-44)||(41966331-41966371)
chr7 (7-43)||(45607024-45607060)
[»] chr4 (36 HSPs)
chr4 (59-221)||(882644-882809)
chr4 (2-44)||(6953418-6953460)
chr4 (2-43)||(23347775-23347816)
chr4 (4-44)||(51318702-51318742)
chr4 (4-43)||(31240648-31240687)
chr4 (5-44)||(46566928-46566967)
chr4 (4-43)||(52392257-52392296)
chr4 (5-44)||(54800997-54801036)
chr4 (4-45)||(34116572-34116613)
chr4 (7-43)||(1031755-1031791)
chr4 (4-44)||(4896532-4896572)
chr4 (4-43)||(11064121-11064160)
chr4 (4-47)||(31804361-31804404)
chr4 (6-45)||(41119504-41119543)
chr4 (6-44)||(5234494-5234532)
chr4 (5-43)||(26885291-26885329)
chr4 (2-44)||(36444425-36444467)
chr4 (6-44)||(46173549-46173587)
chr4 (6-43)||(11997685-11997722)
chr4 (4-45)||(30973595-30973636)
chr4 (6-43)||(37547065-37547102)
chr4 (2-43)||(50158995-50159036)
chr4 (5-46)||(51359823-51359864)
chr4 (6-39)||(52487165-52487198)
chr4 (5-46)||(52669642-52669683)
chr4 (5-45)||(1796364-1796404)
chr4 (7-43)||(6370980-6371016)
chr4 (5-49)||(14527638-14527682)
chr4 (7-43)||(15596396-15596432)
chr4 (13-45)||(26440674-26440706)
chr4 (4-44)||(36792331-36792371)
chr4 (13-45)||(40409207-40409239)
chr4 (5-45)||(45521612-45521652)
chr4 (4-40)||(48326555-48326591)
chr4 (5-45)||(51377326-51377366)
chr4 (5-45)||(55268034-55268074)
[»] chr3 (42 HSPs)
chr3 (4-45)||(24537217-24537258)
chr3 (4-43)||(9027873-9027912)
chr3 (4-43)||(51672863-51672902)
chr3 (7-45)||(7294135-7294173)
chr3 (5-47)||(43409395-43409437)
chr3 (2-43)||(14957836-14957877)
chr3 (4-44)||(18169156-18169196)
chr3 (5-44)||(1901959-1901998)
chr3 (5-44)||(1911405-1911444)
chr3 (2-45)||(28300678-28300721)
chr3 (5-48)||(31176473-31176516)
chr3 (4-47)||(34271522-34271565)
chr3 (5-44)||(43499594-43499633)
chr3 (5-44)||(47774008-47774047)
chr3 (4-43)||(51464304-51464343)
chr3 (5-43)||(2482707-2482745)
chr3 (5-43)||(3347155-3347193)
chr3 (4-46)||(34733323-34733365)
chr3 (2-44)||(46473127-46473169)
chr3 (4-45)||(11173456-11173497)
chr3 (4-53)||(44334833-44334882)
chr3 (4-45)||(46315987-46316028)
chr3 (7-44)||(48945846-48945883)
chr3 (7-44)||(55344331-55344368)
chr3 (4-44)||(108430-108470)
chr3 (4-44)||(5398917-5398957)
chr3 (4-40)||(14207378-14207414)
chr3 (4-40)||(14215126-14215162)
chr3 (7-43)||(20380924-20380960)
chr3 (4-44)||(22813071-22813111)
chr3 (4-44)||(26279883-26279923)
chr3 (13-45)||(34607961-34607993)
chr3 (4-44)||(35272026-35272066)
chr3 (5-49)||(38944174-38944218)
chr3 (13-45)||(41877652-41877684)
chr3 (2-42)||(42104466-42104506)
chr3 (4-44)||(43169774-43169814)
chr3 (5-45)||(44910695-44910735)
chr3 (17-45)||(46003703-46003731)
chr3 (4-44)||(47849671-47849711)
chr3 (5-45)||(50207003-50207043)
chr3 (5-49)||(50294145-50294189)
[»] chr8 (21 HSPs)
chr8 (2-46)||(7279985-7280029)
chr8 (4-44)||(40842013-40842053)
chr8 (2-44)||(28927680-28927722)
chr8 (1-43)||(43290894-43290936)
chr8 (4-44)||(39021475-39021515)
chr8 (4-44)||(45101395-45101435)
chr8 (6-45)||(5502369-5502408)
chr8 (5-44)||(32725813-32725852)
chr8 (2-44)||(13267116-13267158)
chr8 (6-43)||(1796496-1796533)
chr8 (2-47)||(3650109-3650154)
chr8 (7-44)||(11223894-11223931)
chr8 (6-43)||(12732842-12732879)
chr8 (7-44)||(22852874-22852911)
chr8 (4-45)||(27836178-27836219)
chr8 (5-45)||(3946238-3946278)
chr8 (4-44)||(5740806-5740846)
chr8 (4-44)||(8841029-8841069)
chr8 (4-44)||(11879522-11879562)
chr8 (4-44)||(11896938-11896978)
chr8 (21-49)||(42620026-42620054)
[»] chr5 (28 HSPs)
chr5 (2-49)||(18449255-18449302)
chr5 (7-44)||(11768025-11768062)
chr5 (4-44)||(10232498-10232538)
chr5 (5-41)||(36624320-36624356)
chr5 (6-45)||(6865810-6865849)
chr5 (5-44)||(8675466-8675505)
chr5 (4-43)||(12661979-12662018)
chr5 (5-44)||(28811428-28811467)
chr5 (4-43)||(34381012-34381051)
chr5 (6-45)||(35814451-35814490)
chr5 (4-43)||(39595272-39595311)
chr5 (5-47)||(30640786-30640828)
chr5 (6-52)||(31683518-31683564)
chr5 (5-43)||(36581498-36581536)
chr5 (7-45)||(36713213-36713251)
chr5 (4-49)||(125086-125131)
chr5 (7-44)||(1774318-1774355)
chr5 (5-46)||(8920075-8920116)
chr5 (4-41)||(12910786-12910823)
chr5 (7-44)||(23991169-23991206)
chr5 (7-44)||(26660446-26660483)
chr5 (7-44)||(26932038-26932075)
chr5 (4-45)||(41383386-41383427)
chr5 (5-45)||(189736-189776)
chr5 (5-45)||(9594476-9594516)
chr5 (7-43)||(19127124-19127160)
chr5 (4-44)||(19376164-19376204)
chr5 (5-45)||(43057433-43057473)
[»] chr1 (25 HSPs)
chr1 (1-44)||(35846348-35846391)
chr1 (6-44)||(31480142-31480180)
chr1 (5-47)||(34040533-34040575)
chr1 (5-46)||(32873338-32873379)
chr1 (6-51)||(49241527-49241572)
chr1 (3-43)||(20288371-20288411)
chr1 (5-49)||(26501289-26501333)
chr1 (5-45)||(49425736-49425776)
chr1 (4-44)||(50062006-50062046)
chr1 (4-44)||(50226911-50226951)
chr1 (5-44)||(11097917-11097956)
chr1 (1-44)||(25302672-25302715)
chr1 (5-44)||(27352629-27352668)
chr1 (5-48)||(45333351-45333394)
chr1 (4-43)||(45740576-45740615)
chr1 (6-44)||(15466757-15466795)
chr1 (6-44)||(29489393-29489431)
chr1 (5-43)||(32821635-32821673)
chr1 (6-44)||(49453490-49453528)
chr1 (5-42)||(1523327-1523364)
chr1 (13-46)||(31427998-31428031)
chr1 (4-44)||(366656-366696)
chr1 (7-43)||(5309075-5309111)
chr1 (5-45)||(17167847-17167887)
chr1 (5-45)||(43457852-43457892)
[»] scaffold0026 (1 HSPs)
scaffold0026 (2-43)||(113625-113666)
[»] scaffold0011 (2 HSPs)
scaffold0011 (4-44)||(219696-219736)
scaffold0011 (5-43)||(18595-18633)
[»] chr6 (10 HSPs)
chr6 (5-45)||(8173345-8173385)
chr6 (4-43)||(32457284-32457323)
chr6 (5-47)||(3610994-3611036)
chr6 (5-42)||(6435037-6435074)
chr6 (4-45)||(9954546-9954587)
chr6 (4-45)||(10521124-10521165)
chr6 (5-45)||(4820249-4820289)
chr6 (4-44)||(29383556-29383596)
chr6 (4-44)||(30796107-30796147)
chr6 (4-44)||(31517201-31517241)
[»] scaffold0003 (2 HSPs)
scaffold0003 (5-44)||(88807-88846)
scaffold0003 (5-49)||(337112-337156)
[»] scaffold0131 (1 HSPs)
scaffold0131 (4-42)||(15566-15604)
[»] scaffold0154 (1 HSPs)
scaffold0154 (4-45)||(4313-4354)
[»] scaffold0508 (1 HSPs)
scaffold0508 (7-43)||(11571-11607)
[»] scaffold0018 (1 HSPs)
scaffold0018 (4-44)||(36001-36041)


Alignment Details
Target: chr2 (Bit Score: 122; Significance: 1e-62; HSPs: 30)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 44 - 229
Target Start/End: Original strand, 10393220 - 10393405
Alignment:
Q  44 tattatgttttggcatg---aggtagagaatatcatcaccaacatcactacaccctatgcacacatgattattaaaacataaagaaacnnnnnnntcaat 140  Q
    |||||||||||||||||   |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||       |||||    
T  10393220 tattatgttttggcatgttgaggtagagaatatcatcaccgacatcactacaccctatgcacacatgattattaaaacataaagaaacaaaaaa-tcaat 10393318  T
Q  141 ccattggcgcaaagattgaagtatccagcaaattttcattggaaatcaactcaatagtgaaagaaaagaagcgattgattattgagatt 229  Q
    ||||||||  ||| |||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  10393319 ccattggc--aaatattgaagtatccagcaaattttgattggaaatcaactaaatagtgaaagaaaagaagcgattgattattgagatt 10393405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 5 - 47
Target Start/End: Complemental strand, 13553185 - 13553143
Alignment:
Q  5 aaaagttatcacaaagtggatgtacaaatatcatttctctatt 47  Q
    |||| |||||||||||||| |||||||||||||||||||||||    
T  13553185 aaaaattatcacaaagtggttgtacaaatatcatttctctatt 13553143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 44
Target Start/End: Original strand, 11229356 - 11229393
Alignment:
Q  7 aagttatcacaaagtggatgtacaaatatcatttctct 44  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  11229356 aagttgtcacaaagtggatgtacaaatatcatttctct 11229393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 43
Target Start/End: Complemental strand, 36435722 - 36435681
Alignment:
Q  2 ttaaaaagttatcacaaagtggatgtacaaatatcatttctc 43  Q
    |||||||||| ||||||||||| |||||||||||||||||||    
T  36435722 ttaaaaagttgtcacaaagtggttgtacaaatatcatttctc 36435681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 44
Target Start/End: Original strand, 4738604 - 4738644
Alignment:
Q  4 aaaaagttatcacaaagtggatgtacaaatatcatttctct 44  Q
    |||||||| ||||||||||| ||||||||||||||||||||    
T  4738604 aaaaagttgtcacaaagtggttgtacaaatatcatttctct 4738644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 44
Target Start/End: Original strand, 5067678 - 5067718
Alignment:
Q  4 aaaaagttatcacaaagtggatgtacaaatatcatttctct 44  Q
    |||||||| ||||||||| ||||||||||||||||||||||    
T  5067678 aaaaagttgtcacaaagtagatgtacaaatatcatttctct 5067718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 44
Target Start/End: Original strand, 33296103 - 33296143
Alignment:
Q  4 aaaaagttatcacaaagtggatgtacaaatatcatttctct 44  Q
    |||||||| ||||||||||| ||||||||||||||||||||    
T  33296103 aaaaagttgtcacaaagtggttgtacaaatatcatttctct 33296143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 44
Target Start/End: Original strand, 34139070 - 34139110
Alignment:
Q  4 aaaaagttatcacaaagtggatgtacaaatatcatttctct 44  Q
    ||||| |||||||||||| ||||||||||||||||||||||    
T  34139070 aaaaaattatcacaaagtagatgtacaaatatcatttctct 34139110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 43
Target Start/End: Original strand, 5455485 - 5455524
Alignment:
Q  4 aaaaagttatcacaaagtggatgtacaaatatcatttctc 43  Q
    |||| ||| |||||||||||||||||||||||||||||||    
T  5455485 aaaaggttgtcacaaagtggatgtacaaatatcatttctc 5455524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 44
Target Start/End: Complemental strand, 18508116 - 18508077
Alignment:
Q  5 aaaagttatcacaaagtggatgtacaaatatcatttctct 44  Q
    ||||||||||| ||| ||||||||||||||||||||||||    
T  18508116 aaaagttatcataaaatggatgtacaaatatcatttctct 18508077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 44
Target Start/End: Complemental strand, 22966824 - 22966785
Alignment:
Q  5 aaaagttatcacaaagtggatgtacaaatatcatttctct 44  Q
    ||||||||||| ||||||| ||||||||||||||||||||    
T  22966824 aaaagttatcaaaaagtggttgtacaaatatcatttctct 22966785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 43
Target Start/End: Original strand, 39247495 - 39247534
Alignment:
Q  4 aaaaagttatcacaaagtggatgtacaaatatcatttctc 43  Q
    |||||||||||||||| ||| |||||||||||||||||||    
T  39247495 aaaaagttatcacaaaatggttgtacaaatatcatttctc 39247534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 47
Target Start/End: Complemental strand, 6884948 - 6884906
Alignment:
Q  5 aaaagttatcacaaagtggatgtacaaatatcatttctctatt 47  Q
    ||||||||||||||| | | |||||||||||||||||||||||    
T  6884948 aaaagttatcacaaattagttgtacaaatatcatttctctatt 6884906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 44
Target Start/End: Complemental strand, 13711098 - 13711060
Alignment:
Q  6 aaagttatcacaaagtggatgtacaaatatcatttctct 44  Q
    |||||||||| ||||||| ||||||||||||||||||||    
T  13711098 aaagttatcaaaaagtggttgtacaaatatcatttctct 13711060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 42
Target Start/End: Original strand, 26321729 - 26321767
Alignment:
Q  4 aaaaagttatcacaaagtggatgtacaaatatcatttct 42  Q
    |||||||||||||||| ||| ||||||||||||||||||    
T  26321729 aaaaagttatcacaaaatggttgtacaaatatcatttct 26321767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 42
Target Start/End: Original strand, 26321897 - 26321935
Alignment:
Q  4 aaaaagttatcacaaagtggatgtacaaatatcatttct 42  Q
    |||||||||||||||| ||| ||||||||||||||||||    
T  26321897 aaaaagttatcacaaaatggttgtacaaatatcatttct 26321935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 43
Target Start/End: Complemental strand, 30856845 - 30856807
Alignment:
Q  5 aaaagttatcacaaagtggatgtacaaatatcatttctc 43  Q
    ||||||| ||||||||||| |||||||||||||||||||    
T  30856845 aaaagttgtcacaaagtggttgtacaaatatcatttctc 30856807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 47
Target Start/End: Original strand, 35589420 - 35589462
Alignment:
Q  5 aaaagttatcacaaagtggatgtacaaatatcatttctctatt 47  Q
    ||||||| ||||||| ||||||| |||||||||||||||||||    
T  35589420 aaaagttgtcacaaaatggatgttcaaatatcatttctctatt 35589462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 47
Target Start/End: Original strand, 39449150 - 39449192
Alignment:
Q  5 aaaagttatcacaaagtggatgtacaaatatcatttctctatt 47  Q
    ||||||| ||||||| ||||||| |||||||||||||||||||    
T  39449150 aaaagttgtcacaaaatggatgttcaaatatcatttctctatt 39449192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 45
Target Start/End: Complemental strand, 6365225 - 6365184
Alignment:
Q  4 aaaaagttatcacaaagtggatgtacaaatatcatttctcta 45  Q
    ||||| || ||||||||||| |||||||||||||||||||||    
T  6365225 aaaaaattgtcacaaagtggttgtacaaatatcatttctcta 6365184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 43
Target Start/End: Original strand, 9449445 - 9449486
Alignment:
Q  2 ttaaaaagttatcacaaagtggatgtacaaatatcatttctc 43  Q
    |||||||||||||| |||||| ||||||| ||||||||||||    
T  9449445 ttaaaaagttatcaaaaagtgaatgtacatatatcatttctc 9449486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 43
Target Start/End: Complemental strand, 12600081 - 12600048
Alignment:
Q  10 ttatcacaaagtggatgtacaaatatcatttctc 43  Q
    |||||||||||||| |||||||||||||||||||    
T  12600081 ttatcacaaagtggttgtacaaatatcatttctc 12600048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 46
Target Start/End: Original strand, 36909876 - 36909917
Alignment:
Q  5 aaaagttatcacaaagtggatgtacaaatatcatttctctat 46  Q
    ||||||| ||||||| ||| ||||||||||||||||||||||    
T  36909876 aaaagttgtcacaaaatggttgtacaaatatcatttctctat 36909917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 45
Target Start/End: Complemental strand, 37966406 - 37966365
Alignment:
Q  4 aaaaagttatcacaaagtggatgtacaaatatcatttctcta 45  Q
    |||||||| ||||||| ||| |||||||||||||||||||||    
T  37966406 aaaaagttgtcacaaattggttgtacaaatatcatttctcta 37966365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 46
Target Start/End: Original strand, 546415 - 546459
Alignment:
Q  2 ttaaaaagttatcacaaagtggatgtacaaatatcatttctctat 46  Q
    |||||||||| | | ||||||| ||||||||||||||||||||||    
T  546415 ttaaaaagttgtaataaagtggttgtacaaatatcatttctctat 546459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 44
Target Start/End: Original strand, 5167774 - 5167814
Alignment:
Q  4 aaaaagttatcacaaagtggatgtacaaatatcatttctct 44  Q
    ||||| || ||||||||||| ||||||||||||||||||||    
T  5167774 aaaaaattgtcacaaagtggttgtacaaatatcatttctct 5167814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 48
Target Start/End: Complemental strand, 23880134 - 23880090
Alignment:
Q  4 aaaaagttatcacaaagtggatgtacaaatatcatttctctatta 48  Q
    |||||||| | | ||||||| ||||||||||||||||||||||||    
T  23880134 aaaaagttgtgagaaagtggttgtacaaatatcatttctctatta 23880090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 44
Target Start/End: Complemental strand, 34442152 - 34442112
Alignment:
Q  4 aaaaagttatcacaaagtggatgtacaaatatcatttctct 44  Q
    ||||| |||||| ||||||| ||||||||||||||||||||    
T  34442152 aaaaaattatcataaagtggttgtacaaatatcatttctct 34442112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 44
Target Start/End: Original strand, 42283275 - 42283311
Alignment:
Q  8 agttatcacaaagtggatgtacaaatatcatttctct 44  Q
    |||| ||||||||||| ||||||||||||||||||||    
T  42283275 agttgtcacaaagtggttgtacaaatatcatttctct 42283311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 44
Target Start/End: Complemental strand, 44189866 - 44189826
Alignment:
Q  4 aaaaagttatcacaaagtggatgtacaaatatcatttctct 44  Q
    |||||||| ||| ||||||| ||||||||||||||||||||    
T  44189866 aaaaagttgtcataaagtggttgtacaaatatcatttctct 44189826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 7e-27; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 59 - 221
Target Start/End: Complemental strand, 3788420 - 3788261
Alignment:
Q  59 tgaggtagagaatatcatcaccaacatcactacaccctatgcacacatgattattaaaacataaagaaacnnnnnnntcaatccattggcgcaaagattg 158  Q
    |||||||||||||||||||||||| | ||| | ||||| | |||||||||||||||||| ||||| ||||       |||||||||||||  |||||| |    
T  3788420 tgaggtagagaatatcatcaccaagaccaccataccctgttcacacatgattattaaaatataaacaaacaaaaaa-tcaatccattggc--aaagatag 3788324  T
Q  159 aagtatccagcaaattttcattggaaatcaactcaatagtgaaagaaaagaagcgattgatta 221  Q
    ||||||||| | |||| | |||| ||||||||| |||||||||||||||||||| ||||||||    
T  3788323 aagtatccaaccaattctgattgcaaatcaactaaatagtgaaagaaaagaagcaattgatta 3788261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 6 - 46
Target Start/End: Complemental strand, 25887631 - 25887591
Alignment:
Q  6 aaagttatcacaaagtggatgtacaaatatcatttctctat 46  Q
    |||||| ||||||||||||||||||||||||||||||||||    
T  25887631 aaagttgtcacaaagtggatgtacaaatatcatttctctat 25887591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 7 - 49
Target Start/End: Original strand, 156017 - 156059
Alignment:
Q  7 aagttatcacaaagtggatgtacaaatatcatttctctattat 49  Q
    ||||| |||||||||||||||||||||||||||||||| ||||    
T  156017 aagttgtcacaaagtggatgtacaaatatcatttctcttttat 156059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 5 - 47
Target Start/End: Original strand, 43079665 - 43079707
Alignment:
Q  5 aaaagttatcacaaagtggatgtacaaatatcatttctctatt 47  Q
    |||| |||||||||||||| |||||||||||||||||||||||    
T  43079665 aaaaattatcacaaagtggttgtacaaatatcatttctctatt 43079707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 45
Target Start/End: Original strand, 44894505 - 44894546
Alignment:
Q  4 aaaaagttatcacaaagtggatgtacaaatatcatttctcta 45  Q
    |||||||||||| ||| |||||||||||||||||||||||||    
T  44894505 aaaaagttatcataaaatggatgtacaaatatcatttctcta 44894546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 25614854 - 25614898
Alignment:
Q  5 aaaagttatcacaaagtggatgtacaaatatcatttctctattat 49  Q
    ||||||||||| ||| ||||||||||||||||||||||| |||||    
T  25614854 aaaagttatcaaaaaatggatgtacaaatatcatttctcaattat 25614898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 47
Target Start/End: Complemental strand, 19426619 - 19426576
Alignment:
Q  4 aaaaagttatcacaaagtggatgtacaaatatcatttctctatt 47  Q
    |||||||| ||||||| ||| |||||||||||||||||||||||    
T  19426619 aaaaagttgtcacaaaatggttgtacaaatatcatttctctatt 19426576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 44
Target Start/End: Original strand, 38023457 - 38023496
Alignment:
Q  5 aaaagttatcacaaagtggatgtacaaatatcatttctct 44  Q
    |||| |||||||||||||| ||||||||||||||||||||    
T  38023457 aaaaattatcacaaagtggttgtacaaatatcatttctct 38023496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 43
Target Start/End: Complemental strand, 42663123 - 42663084
Alignment:
Q  4 aaaaagttatcacaaagtggatgtacaaatatcatttctc 43  Q
    |||||||| ||||||| |||||||||||||||||||||||    
T  42663123 aaaaagttgtcacaaaatggatgtacaaatatcatttctc 42663084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 43
Target Start/End: Original strand, 48866962 - 48867001
Alignment:
Q  4 aaaaagttatcacaaagtggatgtacaaatatcatttctc 43  Q
    |||||||| ||||||||||| |||||||||||||||||||    
T  48866962 aaaaagttgtcacaaagtggctgtacaaatatcatttctc 48867001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 44
Target Start/End: Complemental strand, 2469740 - 2469702
Alignment:
Q  6 aaagttatcacaaagtggatgtacaaatatcatttctct 44  Q
    |||||| ||||||||||| ||||||||||||||||||||    
T  2469740 aaagttgtcacaaagtggttgtacaaatatcatttctct 2469702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 44
Target Start/End: Original strand, 22330654 - 22330692
Alignment:
Q  6 aaagttatcacaaagtggatgtacaaatatcatttctct 44  Q
    |||||| ||||||||||| ||||||||||||||||||||    
T  22330654 aaagttgtcacaaagtggttgtacaaatatcatttctct 22330692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 43
Target Start/End: Complemental strand, 29763868 - 29763830
Alignment:
Q  5 aaaagttatcacaaagtggatgtacaaatatcatttctc 43  Q
    ||||||||||||||| ||| |||||||||||||||||||    
T  29763868 aaaagttatcacaaaatggttgtacaaatatcatttctc 29763830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 47
Target Start/End: Original strand, 37173007 - 37173049
Alignment:
Q  5 aaaagttatcacaaagtggatgtacaaatatcatttctctatt 47  Q
    ||||||||||||||| ||| |||||||||||||||||| ||||    
T  37173007 aaaagttatcacaaattggttgtacaaatatcatttctttatt 37173049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 44
Target Start/End: Original strand, 37352013 - 37352051
Alignment:
Q  6 aaagttatcacaaagtggatgtacaaatatcatttctct 44  Q
    |||||| ||||||||||| ||||||||||||||||||||    
T  37352013 aaagttgtcacaaagtggttgtacaaatatcatttctct 37352051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 40717265 - 40717307
Alignment:
Q  1 attaaaaagttatcacaaagtggatgtacaaatatcatttctc 43  Q
    ||||||||||| ||| ||||||||||||||| |||||||||||    
T  40717265 attaaaaagttgtcataaagtggatgtacaagtatcatttctc 40717307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 43
Target Start/End: Complemental strand, 40842435 - 40842405
Alignment:
Q  13 tcacaaagtggatgtacaaatatcatttctc 43  Q
    |||||||||||||||||||||||||||||||    
T  40842435 tcacaaagtggatgtacaaatatcatttctc 40842405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 46
Target Start/End: Original strand, 10700219 - 10700260
Alignment:
Q  5 aaaagttatcacaaagtggatgtacaaatatcatttctctat 46  Q
    ||||||||||| ||||||| ||| ||||||||||||||||||    
T  10700219 aaaagttatcaaaaagtggttgtgcaaatatcatttctctat 10700260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 41
Target Start/End: Complemental strand, 28596945 - 28596908
Alignment:
Q  4 aaaaagttatcacaaagtggatgtacaaatatcatttc 41  Q
    |||||||| ||||||||||| |||||||||||||||||    
T  28596945 aaaaagttgtcacaaagtggttgtacaaatatcatttc 28596908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 44
Target Start/End: Complemental strand, 28824542 - 28824502
Alignment:
Q  4 aaaaagttatcacaaagtggatgtacaaatatcatttctct 44  Q
    |||||||| ||| ||||||| ||||||||||||||||||||    
T  28824542 aaaaagttgtcagaaagtggttgtacaaatatcatttctct 28824502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 44
Target Start/End: Original strand, 31274561 - 31274601
Alignment:
Q  4 aaaaagttatcacaaagtggatgtacaaatatcatttctct 44  Q
    |||||||| ||||||| ||| ||||||||||||||||||||    
T  31274561 aaaaagttgtcacaaattggttgtacaaatatcatttctct 31274601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 37899361 - 37899321
Alignment:
Q  5 aaaagttatcacaaagtggatgtacaaatatcatttctcta 45  Q
    ||||||| ||||||| ||||||| |||||||||||||||||    
T  37899361 aaaagttgtcacaaaatggatgttcaaatatcatttctcta 37899321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 44
Target Start/End: Complemental strand, 41966371 - 41966331
Alignment:
Q  4 aaaaagttatcacaaagtggatgtacaaatatcatttctct 44  Q
    ||||| || ||||||||||| ||||||||||||||||||||    
T  41966371 aaaaaattgtcacaaagtggttgtacaaatatcatttctct 41966331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 43
Target Start/End: Complemental strand, 45607060 - 45607024
Alignment:
Q  7 aagttatcacaaagtggatgtacaaatatcatttctc 43  Q
    ||||| ||||||||| |||||||||||||||||||||    
T  45607060 aagttgtcacaaagtagatgtacaaatatcatttctc 45607024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 36)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 59 - 221
Target Start/End: Original strand, 882644 - 882809
Alignment:
Q  59 tgaggtagagaatatcatcaccaacatcactac------accctatgcacacatgattattaaaacataaagaaacnnnnnnntcaatccattggcgcaa 152  Q
    |||||||||||||||||||||||||| ||| ||      ||||| | |||||||||||||||||||||||| ||||       | |||||||||||  ||    
T  882644 tgaggtagagaatatcatcaccaacaccaccaccaccataccctgttcacacatgattattaaaacataaacaaacaaaaaatt-aatccattggc--aa 882740  T
Q  153 agattgaagtatccagcaaattttcattggaaatcaactcaatagtgaaagaaaagaagcgattgatta 221  Q
    || | |||||||||| | |||| | |||| ||||||||| |||||||||||||||||||| ||||||||    
T  882741 aggtagaagtatccaaccaattatgattgcaaatcaactaaatagtgaaagaaaagaagcaattgatta 882809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 2 - 44
Target Start/End: Original strand, 6953418 - 6953460
Alignment:
Q  2 ttaaaaagttatcacaaagtggatgtacaaatatcatttctct 44  Q
    |||||||||| ||||||||||||||||||||||||||||||||    
T  6953418 ttaaaaagttgtcacaaagtggatgtacaaatatcatttctct 6953460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 43
Target Start/End: Complemental strand, 23347816 - 23347775
Alignment:
Q  2 ttaaaaagttatcacaaagtggatgtacaaatatcatttctc 43  Q
    |||||||||| |||||||||||||||||||||||||||||||    
T  23347816 ttaaaaagttgtcacaaagtggatgtacaaatatcatttctc 23347775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 4 - 44
Target Start/End: Complemental strand, 51318742 - 51318702
Alignment:
Q  4 aaaaagttatcacaaagtggatgtacaaatatcatttctct 44  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  51318742 aaaaagttatcacaaagtggttgtacaaatatcatttctct 51318702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 43
Target Start/End: Complemental strand, 31240687 - 31240648
Alignment:
Q  4 aaaaagttatcacaaagtggatgtacaaatatcatttctc 43  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  31240687 aaaaagttatcacaaagtggttgtacaaatatcatttctc 31240648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 44
Target Start/End: Complemental strand, 46566967 - 46566928
Alignment:
Q  5 aaaagttatcacaaagtggatgtacaaatatcatttctct 44  Q
    ||||||| ||||||||||||||||||||||||||||||||    
T  46566967 aaaagttgtcacaaagtggatgtacaaatatcatttctct 46566928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 43
Target Start/End: Original strand, 52392257 - 52392296
Alignment:
Q  4 aaaaagttatcacaaagtggatgtacaaatatcatttctc 43  Q
    |||||||| |||||||||||||||||||||||||||||||    
T  52392257 aaaaagttgtcacaaagtggatgtacaaatatcatttctc 52392296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 44
Target Start/End: Complemental strand, 54801036 - 54800997
Alignment:
Q  5 aaaagttatcacaaagtggatgtacaaatatcatttctct 44  Q
    ||||||||||||||||||| ||||||||||||||||||||    
T  54801036 aaaagttatcacaaagtggttgtacaaatatcatttctct 54800997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 45
Target Start/End: Original strand, 34116572 - 34116613
Alignment:
Q  4 aaaaagttatcacaaagtggatgtacaaatatcatttctcta 45  Q
    |||||||| ||||||||||| |||||||||||||||||||||    
T  34116572 aaaaagttgtcacaaagtggttgtacaaatatcatttctcta 34116613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 43
Target Start/End: Complemental strand, 1031791 - 1031755
Alignment:
Q  7 aagttatcacaaagtggatgtacaaatatcatttctc 43  Q
    ||||||||||||||||| |||||||||||||||||||    
T  1031791 aagttatcacaaagtggttgtacaaatatcatttctc 1031755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 44
Target Start/End: Original strand, 4896532 - 4896572
Alignment:
Q  4 aaaaagttatcacaaagtggatgtacaaatatcatttctct 44  Q
    |||||||| ||||||||||| ||||||||||||||||||||    
T  4896532 aaaaagttgtcacaaagtggttgtacaaatatcatttctct 4896572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 43
Target Start/End: Original strand, 11064121 - 11064160
Alignment:
Q  4 aaaaagttatcacaaagtggatgtacaaatatcatttctc 43  Q
    |||||||| ||||||||||| |||||||||||||||||||    
T  11064121 aaaaagttgtcacaaagtggttgtacaaatatcatttctc 11064160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 47
Target Start/End: Original strand, 31804361 - 31804404
Alignment:
Q  4 aaaaagttatcacaaagtggatgtacaaatatcatttctctatt 47  Q
    ||||| |||||||||||||  |||||||||||||||||||||||    
T  31804361 aaaaaattatcacaaagtgattgtacaaatatcatttctctatt 31804404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 45
Target Start/End: Original strand, 41119504 - 41119543
Alignment:
Q  6 aaagttatcacaaagtggatgtacaaatatcatttctcta 45  Q
    |||||| ||||||||||| |||||||||||||||||||||    
T  41119504 aaagttgtcacaaagtggttgtacaaatatcatttctcta 41119543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 44
Target Start/End: Original strand, 5234494 - 5234532
Alignment:
Q  6 aaagttatcacaaagtggatgtacaaatatcatttctct 44  Q
    |||||||||||||||||  ||||||||||||||||||||    
T  5234494 aaagttatcacaaagtgattgtacaaatatcatttctct 5234532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 43
Target Start/End: Complemental strand, 26885329 - 26885291
Alignment:
Q  5 aaaagttatcacaaagtggatgtacaaatatcatttctc 43  Q
    ||||||| ||||||||||| |||||||||||||||||||    
T  26885329 aaaagttgtcacaaagtggttgtacaaatatcatttctc 26885291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 44
Target Start/End: Original strand, 36444425 - 36444467
Alignment:
Q  2 ttaaaaagttatcacaaagtggatgtacaaatatcatttctct 44  Q
    |||||||||||||| ||| ||| ||||||||||||||||||||    
T  36444425 ttaaaaagttatcataaaatggttgtacaaatatcatttctct 36444467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 44
Target Start/End: Complemental strand, 46173587 - 46173549
Alignment:
Q  6 aaagttatcacaaagtggatgtacaaatatcatttctct 44  Q
    |||||| ||||||||||| ||||||||||||||||||||    
T  46173587 aaagttgtcacaaagtggttgtacaaatatcatttctct 46173549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 43
Target Start/End: Complemental strand, 11997722 - 11997685
Alignment:
Q  6 aaagttatcacaaagtggatgtacaaatatcatttctc 43  Q
    |||||| ||||||||||| |||||||||||||||||||    
T  11997722 aaagttgtcacaaagtggttgtacaaatatcatttctc 11997685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 45
Target Start/End: Complemental strand, 30973636 - 30973595
Alignment:
Q  4 aaaaagttatcacaaagtggatgtacaaatatcatttctcta 45  Q
    |||||||| ||| ||||||| |||||||||||||||||||||    
T  30973636 aaaaagttgtcataaagtggttgtacaaatatcatttctcta 30973595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 43
Target Start/End: Complemental strand, 37547102 - 37547065
Alignment:
Q  6 aaagttatcacaaagtggatgtacaaatatcatttctc 43  Q
    |||||| ||||||||||| |||||||||||||||||||    
T  37547102 aaagttgtcacaaagtggttgtacaaatatcatttctc 37547065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 43
Target Start/End: Complemental strand, 50159036 - 50158995
Alignment:
Q  2 ttaaaaagttatcacaaagtggatgtacaaatatcatttctc 43  Q
    |||||||||| ||| |||||||||||||| ||||||||||||    
T  50159036 ttaaaaagttgtcaaaaagtggatgtacatatatcatttctc 50158995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 46
Target Start/End: Original strand, 51359823 - 51359864
Alignment:
Q  5 aaaagttatcacaaagtggatgtacaaatatcatttctctat 46  Q
    ||||||| ||||||| ||| ||||||||||||||||||||||    
T  51359823 aaaagttgtcacaaaatggttgtacaaatatcatttctctat 51359864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 39
Target Start/End: Complemental strand, 52487198 - 52487165
Alignment:
Q  6 aaagttatcacaaagtggatgtacaaatatcatt 39  Q
    |||||||||| |||||||||||||||||||||||    
T  52487198 aaagttatcataaagtggatgtacaaatatcatt 52487165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 46
Target Start/End: Original strand, 52669642 - 52669683
Alignment:
Q  5 aaaagttatcacaaagtggatgtacaaatatcatttctctat 46  Q
    ||||||||||||||| ||  ||||||||||||||||||||||    
T  52669642 aaaagttatcacaaattgtttgtacaaatatcatttctctat 52669683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 1796404 - 1796364
Alignment:
Q  5 aaaagttatcacaaagtggatgtacaaatatcatttctcta 45  Q
    ||||||| ||||||| ||| |||||||||||||||||||||    
T  1796404 aaaagttgtcacaaattggttgtacaaatatcatttctcta 1796364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 43
Target Start/End: Complemental strand, 6371016 - 6370980
Alignment:
Q  7 aagttatcacaaagtggatgtacaaatatcatttctc 43  Q
    ||||| ||||||||||| |||||||||||||||||||    
T  6371016 aagttgtcacaaagtggttgtacaaatatcatttctc 6370980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 49
Target Start/End: Complemental strand, 14527682 - 14527638
Alignment:
Q  5 aaaagttatcacaaagtggatgtacaaatatcatttctctattat 49  Q
    ||||||| ||||||| ||||||| |||||||||||| ||||||||    
T  14527682 aaaagttgtcacaaaatggatgttcaaatatcatttttctattat 14527638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 43
Target Start/End: Complemental strand, 15596432 - 15596396
Alignment:
Q  7 aagttatcacaaagtggatgtacaaatatcatttctc 43  Q
    ||||| ||||||||||| |||||||||||||||||||    
T  15596432 aagttgtcacaaagtggttgtacaaatatcatttctc 15596396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 45
Target Start/End: Complemental strand, 26440706 - 26440674
Alignment:
Q  13 tcacaaagtggatgtacaaatatcatttctcta 45  Q
    ||||||||||| |||||||||||||||||||||    
T  26440706 tcacaaagtggttgtacaaatatcatttctcta 26440674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 44
Target Start/End: Complemental strand, 36792371 - 36792331
Alignment:
Q  4 aaaaagttatcacaaagtggatgtacaaatatcatttctct 44  Q
    |||||||| | | ||||||||||||||||||||||||||||    
T  36792371 aaaaagttgttataaagtggatgtacaaatatcatttctct 36792331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 45
Target Start/End: Original strand, 40409207 - 40409239
Alignment:
Q  13 tcacaaagtggatgtacaaatatcatttctcta 45  Q
    ||||||||| |||||||||||||||||||||||    
T  40409207 tcacaaagtagatgtacaaatatcatttctcta 40409239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 45521612 - 45521652
Alignment:
Q  5 aaaagttatcacaaagtggatgtacaaatatcatttctcta 45  Q
    ||||||| ||| ||| |||||||||||||||||||||||||    
T  45521612 aaaagttgtcataaaatggatgtacaaatatcatttctcta 45521652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 40
Target Start/End: Complemental strand, 48326591 - 48326555
Alignment:
Q  4 aaaaagttatcacaaagtggatgtacaaatatcattt 40  Q
    |||||||| ||||||||||| ||||||||||||||||    
T  48326591 aaaaagttgtcacaaagtggttgtacaaatatcattt 48326555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 51377326 - 51377366
Alignment:
Q  5 aaaagttatcacaaagtggatgtacaaatatcatttctcta 45  Q
    ||||||| ||||||| ||| |||||||||||||||||||||    
T  51377326 aaaagttgtcacaaattggttgtacaaatatcatttctcta 51377366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 55268034 - 55268074
Alignment:
Q  5 aaaagttatcacaaagtggatgtacaaatatcatttctcta 45  Q
    ||||||| ||||||| ||| |||||||||||||||||||||    
T  55268034 aaaagttgtcacaaattggttgtacaaatatcatttctcta 55268074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 42)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 4 - 45
Target Start/End: Complemental strand, 24537258 - 24537217
Alignment:
Q  4 aaaaagttatcacaaagtggatgtacaaatatcatttctcta 45  Q
    |||||||| |||||||||||||||||||||||||||||||||    
T  24537258 aaaaagttgtcacaaagtggatgtacaaatatcatttctcta 24537217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 43
Target Start/End: Complemental strand, 9027912 - 9027873
Alignment:
Q  4 aaaaagttatcacaaagtggatgtacaaatatcatttctc 43  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  9027912 aaaaagttatcacaaagtggttgtacaaatatcatttctc 9027873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 43
Target Start/End: Complemental strand, 51672902 - 51672863
Alignment:
Q  4 aaaaagttatcacaaagtggatgtacaaatatcatttctc 43  Q
    |||||||||||||||||| |||||||||||||||||||||    
T  51672902 aaaaagttatcacaaagtagatgtacaaatatcatttctc 51672863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 7 - 45
Target Start/End: Original strand, 7294135 - 7294173
Alignment:
Q  7 aagttatcacaaagtggatgtacaaatatcatttctcta 45  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  7294135 aagttgtcacaaagtggatgtacaaatatcatttctcta 7294173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 5 - 47
Target Start/End: Original strand, 43409395 - 43409437
Alignment:
Q  5 aaaagttatcacaaagtggatgtacaaatatcatttctctatt 47  Q
    |||| |||||||||||||| |||||||||||||||||||||||    
T  43409395 aaaaattatcacaaagtggttgtacaaatatcatttctctatt 43409437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 43
Target Start/End: Complemental strand, 14957877 - 14957836
Alignment:
Q  2 ttaaaaagttatcacaaagtggatgtacaaatatcatttctc 43  Q
    |||||||||| ||||||||||| |||||||||||||||||||    
T  14957877 ttaaaaagttgtcacaaagtggttgtacaaatatcatttctc 14957836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 44
Target Start/End: Complemental strand, 18169196 - 18169156
Alignment:
Q  4 aaaaagttatcacaaagtggatgtacaaatatcatttctct 44  Q
    |||||||| ||||||||||| ||||||||||||||||||||    
T  18169196 aaaaagttgtcacaaagtggttgtacaaatatcatttctct 18169156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 44
Target Start/End: Original strand, 1901959 - 1901998
Alignment:
Q  5 aaaagttatcacaaagtggatgtacaaatatcatttctct 44  Q
    ||||||| ||||||||||| ||||||||||||||||||||    
T  1901959 aaaagttgtcacaaagtggttgtacaaatatcatttctct 1901998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 44
Target Start/End: Original strand, 1911405 - 1911444
Alignment:
Q  5 aaaagttatcacaaagtggatgtacaaatatcatttctct 44  Q
    ||||||| ||||||||||| ||||||||||||||||||||    
T  1911405 aaaagttgtcacaaagtggttgtacaaatatcatttctct 1911444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 45
Target Start/End: Original strand, 28300678 - 28300721
Alignment:
Q  2 ttaaaaagttatcacaaagtggatgtacaaatatcatttctcta 45  Q
    |||||||||| ||| ||||||| |||||||||||||||||||||    
T  28300678 ttaaaaagttgtcataaagtggttgtacaaatatcatttctcta 28300721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 48
Target Start/End: Original strand, 31176473 - 31176516
Alignment:
Q  5 aaaagttatcacaaagtggatgtacaaatatcatttctctatta 48  Q
    |||| |||||||||||||| ||||||||||||||||||| ||||    
T  31176473 aaaaattatcacaaagtggttgtacaaatatcatttctcaatta 31176516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 47
Target Start/End: Original strand, 34271522 - 34271565
Alignment:
Q  4 aaaaagttatcacaaagtggatgtacaaatatcatttctctatt 47  Q
    |||||||| | ||||||||| |||||||||||||||||||||||    
T  34271522 aaaaagttgttacaaagtggttgtacaaatatcatttctctatt 34271565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 44
Target Start/End: Original strand, 43499594 - 43499633
Alignment:
Q  5 aaaagttatcacaaagtggatgtacaaatatcatttctct 44  Q
    ||||||||||| ||||||| ||||||||||||||||||||    
T  43499594 aaaagttatcataaagtggttgtacaaatatcatttctct 43499633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 44
Target Start/End: Original strand, 47774008 - 47774047
Alignment:
Q  5 aaaagttatcacaaagtggatgtacaaatatcatttctct 44  Q
    ||||||||||||||| || |||||||||||||||||||||    
T  47774008 aaaagttatcacaaaatgaatgtacaaatatcatttctct 47774047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 43
Target Start/End: Original strand, 51464304 - 51464343
Alignment:
Q  4 aaaaagttatcacaaagtggatgtacaaatatcatttctc 43  Q
    |||||||| ||||||||||| |||||||||||||||||||    
T  51464304 aaaaagttgtcacaaagtggttgtacaaatatcatttctc 51464343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 43
Target Start/End: Original strand, 2482707 - 2482745
Alignment:
Q  5 aaaagttatcacaaagtggatgtacaaatatcatttctc 43  Q
    ||||||| ||||||| |||||||||||||||||||||||    
T  2482707 aaaagttgtcacaaaatggatgtacaaatatcatttctc 2482745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 43
Target Start/End: Original strand, 3347155 - 3347193
Alignment:
Q  5 aaaagttatcacaaagtggatgtacaaatatcatttctc 43  Q
    ||||||||||||||| ||||||| |||||||||||||||    
T  3347155 aaaagttatcacaaaatggatgttcaaatatcatttctc 3347193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 46
Target Start/End: Original strand, 34733323 - 34733365
Alignment:
Q  4 aaaaagttatcacaaagtggatgtacaaatatcatttctctat 46  Q
    |||||||| ||||||||||| |||||||||||||||| |||||    
T  34733323 aaaaagttgtcacaaagtggttgtacaaatatcatttatctat 34733365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 44
Target Start/End: Complemental strand, 46473169 - 46473127
Alignment:
Q  2 ttaaaaagttatcacaaagtggatgtacaaatatcatttctct 44  Q
    |||||||||| || |||||||| ||||||||||||||||||||    
T  46473169 ttaaaaagttgtcgcaaagtggttgtacaaatatcatttctct 46473127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 45
Target Start/End: Complemental strand, 11173497 - 11173456
Alignment:
Q  4 aaaaagttatcacaaagtggatgtacaaatatcatttctcta 45  Q
    |||||||| ||||||||||| ||||||||||||| |||||||    
T  11173497 aaaaagttgtcacaaagtggttgtacaaatatcaattctcta 11173456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 53
Target Start/End: Original strand, 44334833 - 44334882
Alignment:
Q  4 aaaaagttatcacaaagtggatgtacaaatatcatttctctattatgttt 53  Q
    |||||||| | | ||||||| ||||||||||||||||||||||| |||||    
T  44334833 aaaaagttgtaataaagtggttgtacaaatatcatttctctattttgttt 44334882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 45
Target Start/End: Original strand, 46315987 - 46316028
Alignment:
Q  4 aaaaagttatcacaaagtggatgtacaaatatcatttctcta 45  Q
    |||||||| ||| ||||||| |||||||||||||||||||||    
T  46315987 aaaaagttgtcataaagtggttgtacaaatatcatttctcta 46316028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 44
Target Start/End: Complemental strand, 48945883 - 48945846
Alignment:
Q  7 aagttatcacaaagtggatgtacaaatatcatttctct 44  Q
    ||||| ||||||||||| ||||||||||||||||||||    
T  48945883 aagttgtcacaaagtggttgtacaaatatcatttctct 48945846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 44
Target Start/End: Original strand, 55344331 - 55344368
Alignment:
Q  7 aagttatcacaaagtggatgtacaaatatcatttctct 44  Q
    ||||||||||||| ||| ||||||||||||||||||||    
T  55344331 aagttatcacaaaatggttgtacaaatatcatttctct 55344368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 44
Target Start/End: Complemental strand, 108470 - 108430
Alignment:
Q  4 aaaaagttatcacaaagtggatgtacaaatatcatttctct 44  Q
    ||||| || ||||||||||| ||||||||||||||||||||    
T  108470 aaaaaattgtcacaaagtggttgtacaaatatcatttctct 108430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 44
Target Start/End: Complemental strand, 5398957 - 5398917
Alignment:
Q  4 aaaaagttatcacaaagtggatgtacaaatatcatttctct 44  Q
    ||||| || ||||||||||| ||||||||||||||||||||    
T  5398957 aaaaaattgtcacaaagtggttgtacaaatatcatttctct 5398917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 40
Target Start/End: Complemental strand, 14207414 - 14207378
Alignment:
Q  4 aaaaagttatcacaaagtggatgtacaaatatcattt 40  Q
    |||| ||||||||||||||| ||||||||||||||||    
T  14207414 aaaaggttatcacaaagtggttgtacaaatatcattt 14207378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 40
Target Start/End: Complemental strand, 14215162 - 14215126
Alignment:
Q  4 aaaaagttatcacaaagtggatgtacaaatatcattt 40  Q
    |||| ||||||||||||||| ||||||||||||||||    
T  14215162 aaaaggttatcacaaagtggttgtacaaatatcattt 14215126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 43
Target Start/End: Original strand, 20380924 - 20380960
Alignment:
Q  7 aagttatcacaaagtggatgtacaaatatcatttctc 43  Q
    ||||| ||||||||||| |||||||||||||||||||    
T  20380924 aagttgtcacaaagtggttgtacaaatatcatttctc 20380960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 44
Target Start/End: Complemental strand, 22813111 - 22813071
Alignment:
Q  4 aaaaagttatcacaaagtggatgtacaaatatcatttctct 44  Q
    |||||||| ||| ||||||| ||||||||||||||||||||    
T  22813111 aaaaagttgtcagaaagtggttgtacaaatatcatttctct 22813071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 44
Target Start/End: Complemental strand, 26279923 - 26279883
Alignment:
Q  4 aaaaagttatcacaaagtggatgtacaaatatcatttctct 44  Q
    |||||||| ||| ||||||| ||||||||||||||||||||    
T  26279923 aaaaagttgtcagaaagtggttgtacaaatatcatttctct 26279883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 45
Target Start/End: Original strand, 34607961 - 34607993
Alignment:
Q  13 tcacaaagtggatgtacaaatatcatttctcta 45  Q
    ||||||||||| |||||||||||||||||||||    
T  34607961 tcacaaagtggttgtacaaatatcatttctcta 34607993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 44
Target Start/End: Complemental strand, 35272066 - 35272026
Alignment:
Q  4 aaaaagttatcacaaagtggatgtacaaatatcatttctct 44  Q
    |||| ||| ||||||||||| ||||||||||||||||||||    
T  35272066 aaaaggttgtcacaaagtggttgtacaaatatcatttctct 35272026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 38944174 - 38944218
Alignment:
Q  5 aaaagttatcacaaagtggatgtacaaatatcatttctctattat 49  Q
    ||||||| ||||||| | | |||||||||||||||||||||||||    
T  38944174 aaaagttgtcacaaattagttgtacaaatatcatttctctattat 38944218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 45
Target Start/End: Original strand, 41877652 - 41877684
Alignment:
Q  13 tcacaaagtggatgtacaaatatcatttctcta 45  Q
    ||||||||||| |||||||||||||||||||||    
T  41877652 tcacaaagtggttgtacaaatatcatttctcta 41877684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 42104506 - 42104466
Alignment:
Q  2 ttaaaaagttatcacaaagtggatgtacaaatatcatttct 42  Q
    |||||||||| ||| |||||||||||||| |||||||||||    
T  42104506 ttaaaaagttgtcaaaaagtggatgtacatatatcatttct 42104466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 44
Target Start/End: Original strand, 43169774 - 43169814
Alignment:
Q  4 aaaaagttatcacaaagtggatgtacaaatatcatttctct 44  Q
    |||||||| ||||||| ||| ||||||||||||||||||||    
T  43169774 aaaaagttgtcacaaaatggttgtacaaatatcatttctct 43169814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 44910735 - 44910695
Alignment:
Q  5 aaaagttatcacaaagtggatgtacaaatatcatttctcta 45  Q
    ||||||||||| ||| || ||||||||||||||||||||||    
T  44910735 aaaagttatcataaaatgaatgtacaaatatcatttctcta 44910695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 45
Target Start/End: Complemental strand, 46003731 - 46003703
Alignment:
Q  17 aaagtggatgtacaaatatcatttctcta 45  Q
    |||||||||||||||||||||||||||||    
T  46003731 aaagtggatgtacaaatatcatttctcta 46003703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 44
Target Start/End: Complemental strand, 47849711 - 47849671
Alignment:
Q  4 aaaaagttatcacaaagtggatgtacaaatatcatttctct 44  Q
    ||||| |||||||||| ||| ||||||||||||||||||||    
T  47849711 aaaaaattatcacaaaatggttgtacaaatatcatttctct 47849671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 50207003 - 50207043
Alignment:
Q  5 aaaagttatcacaaagtggatgtacaaatatcatttctcta 45  Q
    ||||||| ||||||| ||||||| |||||||||||||||||    
T  50207003 aaaagttgtcacaaaatggatgttcaaatatcatttctcta 50207043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 50294145 - 50294189
Alignment:
Q  5 aaaagttatcacaaagtggatgtacaaatatcatttctctattat 49  Q
    ||||||| || |||||||| ||||||||||||||||||| |||||    
T  50294145 aaaagttgtcgcaaagtggttgtacaaatatcatttctcaattat 50294189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 2 - 46
Target Start/End: Original strand, 7279985 - 7280029
Alignment:
Q  2 ttaaaaagttatcacaaagtggatgtacaaatatcatttctctat 46  Q
    |||||| ||| ||||||||||||||||||||||||||||||||||    
T  7279985 ttaaaatgttgtcacaaagtggatgtacaaatatcatttctctat 7280029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 4 - 44
Target Start/End: Complemental strand, 40842053 - 40842013
Alignment:
Q  4 aaaaagttatcacaaagtggatgtacaaatatcatttctct 44  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  40842053 aaaaagttatcacaaagtggttgtacaaatatcatttctct 40842013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 2 - 44
Target Start/End: Complemental strand, 28927722 - 28927680
Alignment:
Q  2 ttaaaaagttatcacaaagtggatgtacaaatatcatttctct 44  Q
    |||||||||| ||||||||||| ||||||||||||||||||||    
T  28927722 ttaaaaagttgtcacaaagtggttgtacaaatatcatttctct 28927680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 43290894 - 43290936
Alignment:
Q  1 attaaaaagttatcacaaagtggatgtacaaatatcatttctc 43  Q
    ||||||||||| ||| |||||||||||||||||||||||||||    
T  43290894 attaaaaagttgtcataaagtggatgtacaaatatcatttctc 43290936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 44
Target Start/End: Original strand, 39021475 - 39021515
Alignment:
Q  4 aaaaagttatcacaaagtggatgtacaaatatcatttctct 44  Q
    |||||||||||||||| ||| ||||||||||||||||||||    
T  39021475 aaaaagttatcacaaaatggttgtacaaatatcatttctct 39021515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 44
Target Start/End: Complemental strand, 45101435 - 45101395
Alignment:
Q  4 aaaaagttatcacaaagtggatgtacaaatatcatttctct 44  Q
    |||||||| ||||||||||| ||||||||||||||||||||    
T  45101435 aaaaagttgtcacaaagtggttgtacaaatatcatttctct 45101395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 45
Target Start/End: Complemental strand, 5502408 - 5502369
Alignment:
Q  6 aaagttatcacaaagtggatgtacaaatatcatttctcta 45  Q
    |||||| ||||||||||| |||||||||||||||||||||    
T  5502408 aaagttgtcacaaagtggttgtacaaatatcatttctcta 5502369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 44
Target Start/End: Original strand, 32725813 - 32725852
Alignment:
Q  5 aaaagttatcacaaagtggatgtacaaatatcatttctct 44  Q
    |||| |||||||||||||| ||||||||||||||||||||    
T  32725813 aaaaattatcacaaagtggttgtacaaatatcatttctct 32725852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 44
Target Start/End: Original strand, 13267116 - 13267158
Alignment:
Q  2 ttaaaaagttatcacaaagtggatgtacaaatatcatttctct 44  Q
    |||||||||| ||||||||||| || |||||||||||||||||    
T  13267116 ttaaaaagttgtcacaaagtggttgaacaaatatcatttctct 13267158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 43
Target Start/End: Complemental strand, 1796533 - 1796496
Alignment:
Q  6 aaagttatcacaaagtggatgtacaaatatcatttctc 43  Q
    |||||| ||||||||||| |||||||||||||||||||    
T  1796533 aaagttgtcacaaagtggttgtacaaatatcatttctc 1796496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 47
Target Start/End: Complemental strand, 3650154 - 3650109
Alignment:
Q  2 ttaaaaagttatcacaaagtggatgtacaaatatcatttctctatt 47  Q
    ||||||| |||| ||||| ||| |||||||||||||||||||||||    
T  3650154 ttaaaaaattattacaaattggttgtacaaatatcatttctctatt 3650109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 44
Target Start/End: Original strand, 11223894 - 11223931
Alignment:
Q  7 aagttatcacaaagtggatgtacaaatatcatttctct 44  Q
    ||||| ||||||| ||||||||||||||||||||||||    
T  11223894 aagttgtcacaaaatggatgtacaaatatcatttctct 11223931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 43
Target Start/End: Complemental strand, 12732879 - 12732842
Alignment:
Q  6 aaagttatcacaaagtggatgtacaaatatcatttctc 43  Q
    |||||| ||||||||||| |||||||||||||||||||    
T  12732879 aaagttgtcacaaagtggttgtacaaatatcatttctc 12732842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 44
Target Start/End: Original strand, 22852874 - 22852911
Alignment:
Q  7 aagttatcacaaagtggatgtacaaatatcatttctct 44  Q
    ||||| ||||||||||| ||||||||||||||||||||    
T  22852874 aagttgtcacaaagtggttgtacaaatatcatttctct 22852911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 45
Target Start/End: Complemental strand, 27836219 - 27836178
Alignment:
Q  4 aaaaagttatcacaaagtggatgtacaaatatcatttctcta 45  Q
    |||||||| ||||||||||| |||||||||||||||| ||||    
T  27836219 aaaaagttgtcacaaagtggttgtacaaatatcatttatcta 27836178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 3946278 - 3946238
Alignment:
Q  5 aaaagttatcacaaagtggatgtacaaatatcatttctcta 45  Q
    ||||||| ||||||| ||||||| |||||||||||||||||    
T  3946278 aaaagttgtcacaaaatggatgttcaaatatcatttctcta 3946238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 44
Target Start/End: Original strand, 5740806 - 5740846
Alignment:
Q  4 aaaaagttatcacaaagtggatgtacaaatatcatttctct 44  Q
    |||||||| ||| ||||||| ||||||||||||||||||||    
T  5740806 aaaaagttgtcaaaaagtggttgtacaaatatcatttctct 5740846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 44
Target Start/End: Complemental strand, 8841069 - 8841029
Alignment:
Q  4 aaaaagttatcacaaagtggatgtacaaatatcatttctct 44  Q
    ||||| || ||||||||||| ||||||||||||||||||||    
T  8841069 aaaaaattctcacaaagtggttgtacaaatatcatttctct 8841029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 44
Target Start/End: Original strand, 11879522 - 11879562
Alignment:
Q  4 aaaaagttatcacaaagtggatgtacaaatatcatttctct 44  Q
    |||||||| |||||||||||| ||||| |||||||||||||    
T  11879522 aaaaagttgtcacaaagtggacgtacatatatcatttctct 11879562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 44
Target Start/End: Original strand, 11896938 - 11896978
Alignment:
Q  4 aaaaagttatcacaaagtggatgtacaaatatcatttctct 44  Q
    |||||||| |||||||||||| ||||| |||||||||||||    
T  11896938 aaaaagttgtcacaaagtggacgtacatatatcatttctct 11896978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 49
Target Start/End: Original strand, 42620026 - 42620054
Alignment:
Q  21 tggatgtacaaatatcatttctctattat 49  Q
    |||||||||||||||||||||||||||||    
T  42620026 tggatgtacaaatatcatttctctattat 42620054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 28)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 49
Target Start/End: Complemental strand, 18449302 - 18449255
Alignment:
Q  2 ttaaaaagttatcacaaagtggatgtacaaatatcatttctctattat 49  Q
    |||||||||| |||||||||||||||||||||||||||| | ||||||    
T  18449302 ttaaaaagttgtcacaaagtggatgtacaaatatcatttttgtattat 18449255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 44
Target Start/End: Original strand, 11768025 - 11768062
Alignment:
Q  7 aagttatcacaaagtggatgtacaaatatcatttctct 44  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  11768025 aagttgtcacaaagtggatgtacaaatatcatttctct 11768062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 44
Target Start/End: Complemental strand, 10232538 - 10232498
Alignment:
Q  4 aaaaagttatcacaaagtggatgtacaaatatcatttctct 44  Q
    |||| ||||||||||||| ||||||||||||||||||||||    
T  10232538 aaaaggttatcacaaagttgatgtacaaatatcatttctct 10232498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 41
Target Start/End: Complemental strand, 36624356 - 36624320
Alignment:
Q  5 aaaagttatcacaaagtggatgtacaaatatcatttc 41  Q
    |||||||||||||||||| ||||||||||||||||||    
T  36624356 aaaagttatcacaaagtgaatgtacaaatatcatttc 36624320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 45
Target Start/End: Original strand, 6865810 - 6865849
Alignment:
Q  6 aaagttatcacaaagtggatgtacaaatatcatttctcta 45  Q
    |||||| ||||||||||| |||||||||||||||||||||    
T  6865810 aaagttgtcacaaagtggttgtacaaatatcatttctcta 6865849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 44
Target Start/End: Original strand, 8675466 - 8675505
Alignment:
Q  5 aaaagttatcacaaagtggatgtacaaatatcatttctct 44  Q
    ||||||||||||||| ||||||| ||||||||||||||||    
T  8675466 aaaagttatcacaaaatggatgttcaaatatcatttctct 8675505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 43
Target Start/End: Original strand, 12661979 - 12662018
Alignment:
Q  4 aaaaagttatcacaaagtggatgtacaaatatcatttctc 43  Q
    ||||| || |||||||||||||||||||||||||||||||    
T  12661979 aaaaaattgtcacaaagtggatgtacaaatatcatttctc 12662018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 44
Target Start/End: Complemental strand, 28811467 - 28811428
Alignment:
Q  5 aaaagttatcacaaagtggatgtacaaatatcatttctct 44  Q
    ||||||| ||||||||||| ||||||||||||||||||||    
T  28811467 aaaagttgtcacaaagtggttgtacaaatatcatttctct 28811428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 43
Target Start/End: Complemental strand, 34381051 - 34381012
Alignment:
Q  4 aaaaagttatcacaaagtggatgtacaaatatcatttctc 43  Q
    |||||||| ||||||||||| |||||||||||||||||||    
T  34381051 aaaaagttgtcacaaagtggttgtacaaatatcatttctc 34381012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 45
Target Start/End: Complemental strand, 35814490 - 35814451
Alignment:
Q  6 aaagttatcacaaagtggatgtacaaatatcatttctcta 45  Q
    |||||||||||||| ||| |||||||||||||||||||||    
T  35814490 aaagttatcacaaaatggttgtacaaatatcatttctcta 35814451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 43
Target Start/End: Complemental strand, 39595311 - 39595272
Alignment:
Q  4 aaaaagttatcacaaagtggatgtacaaatatcatttctc 43  Q
    |||||||| ||||||||||| |||||||||||||||||||    
T  39595311 aaaaagttgtcacaaagtggttgtacaaatatcatttctc 39595272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 47
Target Start/End: Complemental strand, 30640828 - 30640786
Alignment:
Q  5 aaaagttatcacaaagtggatgtacaaatatcatttctctatt 47  Q
    ||||||| ||||||| ||||||| |||||||||||||||||||    
T  30640828 aaaagttgtcacaaaatggatgttcaaatatcatttctctatt 30640786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 52
Target Start/End: Original strand, 31683518 - 31683564
Alignment:
Q  6 aaagttatcacaaagtggatgtacaaatatcatttctctattatgtt 52  Q
    |||||||||| ||||||| ||| ||||| ||||||||||||||||||    
T  31683518 aaagttatcaaaaagtggttgttcaaatgtcatttctctattatgtt 31683564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 43
Target Start/End: Original strand, 36581498 - 36581536
Alignment:
Q  5 aaaagttatcacaaagtggatgtacaaatatcatttctc 43  Q
    |||| |||||||||||||| |||||||||||||||||||    
T  36581498 aaaaattatcacaaagtggttgtacaaatatcatttctc 36581536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 45
Target Start/End: Original strand, 36713213 - 36713251
Alignment:
Q  7 aagttatcacaaagtggatgtacaaatatcatttctcta 45  Q
    ||||| ||||||||||| |||||||||||||||||||||    
T  36713213 aagttgtcacaaagtggttgtacaaatatcatttctcta 36713251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 49
Target Start/End: Complemental strand, 125131 - 125086
Alignment:
Q  4 aaaaagttatcacaaagtggatgtacaaatatcatttctctattat 49  Q
    |||||||| ||||||||| | |||||||||||||||||||| ||||    
T  125131 aaaaagttgtcacaaagtagttgtacaaatatcatttctcttttat 125086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 44
Target Start/End: Original strand, 1774318 - 1774355
Alignment:
Q  7 aagttatcacaaagtggatgtacaaatatcatttctct 44  Q
    ||||| ||||||||| ||||||||||||||||||||||    
T  1774318 aagttgtcacaaagtagatgtacaaatatcatttctct 1774355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 46
Target Start/End: Complemental strand, 8920116 - 8920075
Alignment:
Q  5 aaaagttatcacaaagtggatgtacaaatatcatttctctat 46  Q
    ||||||| ||||||| ||||||| ||||||||||||||||||    
T  8920116 aaaagttgtcacaaaatggatgttcaaatatcatttctctat 8920075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 41
Target Start/End: Complemental strand, 12910823 - 12910786
Alignment:
Q  4 aaaaagttatcacaaagtggatgtacaaatatcatttc 41  Q
    |||||||| ||||||||||| |||||||||||||||||    
T  12910823 aaaaagttgtcacaaagtggttgtacaaatatcatttc 12910786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 44
Target Start/End: Original strand, 23991169 - 23991206
Alignment:
Q  7 aagttatcacaaagtggatgtacaaatatcatttctct 44  Q
    ||||| ||||||||||| ||||||||||||||||||||    
T  23991169 aagttgtcacaaagtggttgtacaaatatcatttctct 23991206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 44
Target Start/End: Original strand, 26660446 - 26660483
Alignment:
Q  7 aagttatcacaaagtggatgtacaaatatcatttctct 44  Q
    ||||| ||||||| ||||||||||||||||||||||||    
T  26660446 aagttgtcacaaaatggatgtacaaatatcatttctct 26660483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 44
Target Start/End: Original strand, 26932038 - 26932075
Alignment:
Q  7 aagttatcacaaagtggatgtacaaatatcatttctct 44  Q
    ||||| ||||||| ||||||||||||||||||||||||    
T  26932038 aagttgtcacaaaatggatgtacaaatatcatttctct 26932075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 45
Target Start/End: Original strand, 41383386 - 41383427
Alignment:
Q  4 aaaaagttatcacaaagtggatgtacaaatatcatttctcta 45  Q
    |||||||||||||||| ||| ||||||||||||| |||||||    
T  41383386 aaaaagttatcacaaaatggttgtacaaatatcagttctcta 41383427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 189736 - 189776
Alignment:
Q  5 aaaagttatcacaaagtggatgtacaaatatcatttctcta 45  Q
    ||||||||||| ||| ||||||| |||||||||||||||||    
T  189736 aaaagttatcataaaatggatgttcaaatatcatttctcta 189776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 9594516 - 9594476
Alignment:
Q  5 aaaagttatcacaaagtggatgtacaaatatcatttctcta 45  Q
    ||||||| ||||||| ||| |||||||||||||||||||||    
T  9594516 aaaagttgtcacaaattggttgtacaaatatcatttctcta 9594476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 43
Target Start/End: Complemental strand, 19127160 - 19127124
Alignment:
Q  7 aagttatcacaaagtggatgtacaaatatcatttctc 43  Q
    ||||| ||||||||||| |||||||||||||||||||    
T  19127160 aagttgtcacaaagtggttgtacaaatatcatttctc 19127124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 44
Target Start/End: Original strand, 19376164 - 19376204
Alignment:
Q  4 aaaaagttatcacaaagtggatgtacaaatatcatttctct 44  Q
    |||||||| ||| ||||||| ||||||||||||||||||||    
T  19376164 aaaaagttgtcagaaagtggttgtacaaatatcatttctct 19376204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 43057473 - 43057433
Alignment:
Q  5 aaaagttatcacaaagtggatgtacaaatatcatttctcta 45  Q
    ||||||| ||| ||||||| |||||||||||||||||||||    
T  43057473 aaaagttgtcaaaaagtggttgtacaaatatcatttctcta 43057433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 35846348 - 35846391
Alignment:
Q  1 attaaaaagttatcacaaagtggatgtacaaatatcatttctct 44  Q
    ||||||||||| ||||||||||||| ||||||||||||||||||    
T  35846348 attaaaaagttgtcacaaagtggatatacaaatatcatttctct 35846391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 6 - 44
Target Start/End: Original strand, 31480142 - 31480180
Alignment:
Q  6 aaagttatcacaaagtggatgtacaaatatcatttctct 44  Q
    ||||||||||||||||||||||||| |||||||||||||    
T  31480142 aaagttatcacaaagtggatgtacatatatcatttctct 31480180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 5 - 47
Target Start/End: Original strand, 34040533 - 34040575
Alignment:
Q  5 aaaagttatcacaaagtggatgtacaaatatcatttctctatt 47  Q
    ||||||||||||||| ||||||| |||||||||||||||||||    
T  34040533 aaaagttatcacaaaatggatgttcaaatatcatttctctatt 34040575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 46
Target Start/End: Complemental strand, 32873379 - 32873338
Alignment:
Q  5 aaaagttatcacaaagtggatgtacaaatatcatttctctat 46  Q
    ||||||||||| ||| ||||||||||||||||||||||||||    
T  32873379 aaaagttatcataaaatggatgtacaaatatcatttctctat 32873338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 51
Target Start/End: Original strand, 49241527 - 49241572
Alignment:
Q  6 aaagttatcacaaagtggatgtacaaatatcatttctctattatgt 51  Q
    |||||| ||||||||||||||| ||||||||||||||||| |||||    
T  49241527 aaagttgtcacaaagtggatgttcaaatatcatttctctaatatgt 49241572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 43
Target Start/End: Original strand, 20288371 - 20288411
Alignment:
Q  3 taaaaagttatcacaaagtggatgtacaaatatcatttctc 43  Q
    ||||||||| ||||||| |||||||||||||||||||||||    
T  20288371 taaaaagttgtcacaaattggatgtacaaatatcatttctc 20288411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 49
Target Start/End: Complemental strand, 26501333 - 26501289
Alignment:
Q  5 aaaagttatcacaaagtggatgtacaaatatcatttctctattat 49  Q
    ||||||||| ||||| ||| |||||||||||||||||||||||||    
T  26501333 aaaagttattacaaaatggttgtacaaatatcatttctctattat 26501289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 49425776 - 49425736
Alignment:
Q  5 aaaagttatcacaaagtggatgtacaaatatcatttctcta 45  Q
    ||||||| ||||||||||| |||||||||||||||||||||    
T  49425776 aaaagttgtcacaaagtggttgtacaaatatcatttctcta 49425736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 44
Target Start/End: Original strand, 50062006 - 50062046
Alignment:
Q  4 aaaaagttatcacaaagtggatgtacaaatatcatttctct 44  Q
    ||||| |||||| ||||||||||||||||||||||||||||    
T  50062006 aaaaaattatcataaagtggatgtacaaatatcatttctct 50062046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 44
Target Start/End: Original strand, 50226911 - 50226951
Alignment:
Q  4 aaaaagttatcacaaagtggatgtacaaatatcatttctct 44  Q
    |||||||| ||||||||||| ||||||||||||||||||||    
T  50226911 aaaaagttgtcacaaagtggttgtacaaatatcatttctct 50226951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 44
Target Start/End: Original strand, 11097917 - 11097956
Alignment:
Q  5 aaaagttatcacaaagtggatgtacaaatatcatttctct 44  Q
    ||||||| ||||||| ||||||||||||||||||||||||    
T  11097917 aaaagttgtcacaaaatggatgtacaaatatcatttctct 11097956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 25302672 - 25302715
Alignment:
Q  1 attaaaaagttatcacaaagtggatgtacaaatatcatttctct 44  Q
    ||||||| ||| ||||||||||| ||||||||||||||||||||    
T  25302672 attaaaaggttgtcacaaagtggttgtacaaatatcatttctct 25302715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 44
Target Start/End: Complemental strand, 27352668 - 27352629
Alignment:
Q  5 aaaagttatcacaaagtggatgtacaaatatcatttctct 44  Q
    ||||||||||||||| ||| ||||||||||||||||||||    
T  27352668 aaaagttatcacaaaatggttgtacaaatatcatttctct 27352629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 48
Target Start/End: Complemental strand, 45333394 - 45333351
Alignment:
Q  5 aaaagttatcacaaagtggatgtacaaatatcatttctctatta 48  Q
    ||||||||||| ||||||| ||||||||||||||||||| ||||    
T  45333394 aaaagttatcaaaaagtggttgtacaaatatcatttctcaatta 45333351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 43
Target Start/End: Original strand, 45740576 - 45740615
Alignment:
Q  4 aaaaagttatcacaaagtggatgtacaaatatcatttctc 43  Q
    |||||||| ||||||||||| |||||||||||||||||||    
T  45740576 aaaaagttgtcacaaagtggttgtacaaatatcatttctc 45740615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 44
Target Start/End: Complemental strand, 15466795 - 15466757
Alignment:
Q  6 aaagttatcacaaagtggatgtacaaatatcatttctct 44  Q
    |||||| | ||||||||||||||||||||||||||||||    
T  15466795 aaagttgttacaaagtggatgtacaaatatcatttctct 15466757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 44
Target Start/End: Original strand, 29489393 - 29489431
Alignment:
Q  6 aaagttatcacaaagtggatgtacaaatatcatttctct 44  Q
    |||||||||||||| ||| ||||||||||||||||||||    
T  29489393 aaagttatcacaaaatggttgtacaaatatcatttctct 29489431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 43
Target Start/End: Complemental strand, 32821673 - 32821635
Alignment:
Q  5 aaaagttatcacaaagtggatgtacaaatatcatttctc 43  Q
    ||||||| ||||||||||| |||||||||||||||||||    
T  32821673 aaaagttgtcacaaagtggttgtacaaatatcatttctc 32821635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 44
Target Start/End: Complemental strand, 49453528 - 49453490
Alignment:
Q  6 aaagttatcacaaagtggatgtacaaatatcatttctct 44  Q
    |||||| ||||||||||| ||||||||||||||||||||    
T  49453528 aaagttgtcacaaagtggttgtacaaatatcatttctct 49453490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 42
Target Start/End: Original strand, 1523327 - 1523364
Alignment:
Q  5 aaaagttatcacaaagtggatgtacaaatatcatttct 42  Q
    ||||||||||| ||||||| ||||||||||||||||||    
T  1523327 aaaagttatcaaaaagtggttgtacaaatatcatttct 1523364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 46
Target Start/End: Original strand, 31427998 - 31428031
Alignment:
Q  13 tcacaaagtggatgtacaaatatcatttctctat 46  Q
    ||||||||||| ||||||||||||||||||||||    
T  31427998 tcacaaagtggttgtacaaatatcatttctctat 31428031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 44
Target Start/End: Complemental strand, 366696 - 366656
Alignment:
Q  4 aaaaagttatcacaaagtggatgtacaaatatcatttctct 44  Q
    |||||||||||| ||||||| |||| |||||||||||||||    
T  366696 aaaaagttatcagaaagtggttgtataaatatcatttctct 366656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 43
Target Start/End: Original strand, 5309075 - 5309111
Alignment:
Q  7 aagttatcacaaagtggatgtacaaatatcatttctc 43  Q
    ||||| ||||||||||| |||||||||||||||||||    
T  5309075 aagttgtcacaaagtggttgtacaaatatcatttctc 5309111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 17167887 - 17167847
Alignment:
Q  5 aaaagttatcacaaagtggatgtacaaatatcatttctcta 45  Q
    ||||||| ||| ||| |||||||||||||||||||||||||    
T  17167887 aaaagttgtcataaaatggatgtacaaatatcatttctcta 17167847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 43457852 - 43457892
Alignment:
Q  5 aaaagttatcacaaagtggatgtacaaatatcatttctcta 45  Q
    |||||||||| |||| ||| |||||||||||||||||||||    
T  43457852 aaaagttatcgcaaaatggttgtacaaatatcatttctcta 43457892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 43
Target Start/End: Complemental strand, 113666 - 113625
Alignment:
Q  2 ttaaaaagttatcacaaagtggatgtacaaatatcatttctc 43  Q
    |||||||||| ||||||||||| |||||||||||||||||||    
T  113666 ttaaaaagttgtcacaaagtggttgtacaaatatcatttctc 113625  T

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Target: scaffold0011 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 44
Target Start/End: Original strand, 219696 - 219736
Alignment:
Q  4 aaaaagttatcacaaagtggatgtacaaatatcatttctct 44  Q
    |||||||| ||||||||||| ||||||||||||||||||||    
T  219696 aaaaagttgtcacaaagtggttgtacaaatatcatttctct 219736  T

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Target: scaffold0011; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 43
Target Start/End: Complemental strand, 18633 - 18595
Alignment:
Q  5 aaaagttatcacaaagtggatgtacaaatatcatttctc 43  Q
    ||||||||||||||| ||| |||||||||||||||||||    
T  18633 aaaagttatcacaaattggttgtacaaatatcatttctc 18595  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 8173345 - 8173385
Alignment:
Q  5 aaaagttatcacaaagtggatgtacaaatatcatttctcta 45  Q
    ||||||||||||||||||| || ||||||||||||||||||    
T  8173345 aaaagttatcacaaagtggttgcacaaatatcatttctcta 8173385  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 43
Target Start/End: Original strand, 32457284 - 32457323
Alignment:
Q  4 aaaaagttatcacaaagtggatgtacaaatatcatttctc 43  Q
    |||||||| ||||||||||| |||||||||||||||||||    
T  32457284 aaaaagttgtcacaaagtggttgtacaaatatcatttctc 32457323  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 47
Target Start/End: Original strand, 3610994 - 3611036
Alignment:
Q  5 aaaagttatcacaaagtggatgtacaaatatcatttctctatt 47  Q
    |||||||||||| || ||||||| |||||||||||||||||||    
T  3610994 aaaagttatcactaaatggatgttcaaatatcatttctctatt 3611036  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 42
Target Start/End: Complemental strand, 6435074 - 6435037
Alignment:
Q  5 aaaagttatcacaaagtggatgtacaaatatcatttct 42  Q
    ||||||| ||||||||||| ||||||||||||||||||    
T  6435074 aaaagttgtcacaaagtggttgtacaaatatcatttct 6435037  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 45
Target Start/End: Complemental strand, 9954587 - 9954546
Alignment:
Q  4 aaaaagttatcacaaagtggatgtacaaatatcatttctcta 45  Q
    |||||||| ||||||| ||| |||||||||||||||||||||    
T  9954587 aaaaagttgtcacaaattggttgtacaaatatcatttctcta 9954546  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 45
Target Start/End: Complemental strand, 10521165 - 10521124
Alignment:
Q  4 aaaaagttatcacaaagtggatgtacaaatatcatttctcta 45  Q
    ||||||||||||||||||   |||||||||||||||||||||    
T  10521165 aaaaagttatcacaaagtaattgtacaaatatcatttctcta 10521124  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 4820289 - 4820249
Alignment:
Q  5 aaaagttatcacaaagtggatgtacaaatatcatttctcta 45  Q
    |||||||||||| || ||||||| |||||||||||||||||    
T  4820289 aaaagttatcactaaatggatgttcaaatatcatttctcta 4820249  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 44
Target Start/End: Complemental strand, 29383596 - 29383556
Alignment:
Q  4 aaaaagttatcacaaagtggatgtacaaatatcatttctct 44  Q
    |||||||| ||| ||||||| ||||||||||||||||||||    
T  29383596 aaaaagttgtcagaaagtggttgtacaaatatcatttctct 29383556  T

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Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 44
Target Start/End: Original strand, 30796107 - 30796147
Alignment:
Q  4 aaaaagttatcacaaagtggatgtacaaatatcatttctct 44  Q
    ||||| || ||||||||||| ||||||||||||||||||||    
T  30796107 aaaaaattgtcacaaagtggttgtacaaatatcatttctct 30796147  T

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Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 44
Target Start/End: Original strand, 31517201 - 31517241
Alignment:
Q  4 aaaaagttatcacaaagtggatgtacaaatatcatttctct 44  Q
    |||||||| ||| ||||||| ||||||||||||||||||||    
T  31517201 aaaaagttgtcaaaaagtggttgtacaaatatcatttctct 31517241  T

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Target: scaffold0003 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 44
Target Start/End: Complemental strand, 88846 - 88807
Alignment:
Q  5 aaaagttatcacaaagtggatgtacaaatatcatttctct 44  Q
    ||||||||||||||| ||| ||||||||||||||||||||    
T  88846 aaaagttatcacaaattggttgtacaaatatcatttctct 88807  T

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Target: scaffold0003; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 49
Target Start/End: Complemental strand, 337156 - 337112
Alignment:
Q  5 aaaagttatcacaaagtggatgtacaaatatcatttctctattat 49  Q
    ||||||| ||| ||| ||| |||||||||||||||||||||||||    
T  337156 aaaagttgtcagaaaatggttgtacaaatatcatttctctattat 337112  T

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Target: scaffold0131 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0131
Description:

Target: scaffold0131; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 42
Target Start/End: Original strand, 15566 - 15604
Alignment:
Q  4 aaaaagttatcacaaagtggatgtacaaatatcatttct 42  Q
    |||||||| ||||||||||| ||||||||||||||||||    
T  15566 aaaaagttgtcacaaagtggttgtacaaatatcatttct 15604  T

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Target: scaffold0154 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 45
Target Start/End: Complemental strand, 4354 - 4313
Alignment:
Q  4 aaaaagttatcacaaagtggatgtacaaatatcatttctcta 45  Q
    |||||||||||| ||| ||| |||||||||||||||||||||    
T  4354 aaaaagttatcataaaatggttgtacaaatatcatttctcta 4313  T

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Target: scaffold0508 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 43
Target Start/End: Original strand, 11571 - 11607
Alignment:
Q  7 aagttatcacaaagtggatgtacaaatatcatttctc 43  Q
    ||||| ||||||||| |||||||||||||||||||||    
T  11571 aagttgtcacaaagtagatgtacaaatatcatttctc 11607  T

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Target: scaffold0018 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 44
Target Start/End: Complemental strand, 36041 - 36001
Alignment:
Q  4 aaaaagttatcacaaagtggatgtacaaatatcatttctct 44  Q
    ||||| |||||||||||| | ||||||||||||||||||||    
T  36041 aaaaaattatcacaaagtagttgtacaaatatcatttctct 36001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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