View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9187_low_1 (Length: 1068)
Name: NF9187_low_1
Description: NF9187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9187_low_1 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 838; Significance: 0; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 838; E-Value: 0
Query Start/End: Original strand, 20 - 937
Target Start/End: Complemental strand, 42575376 - 42574458
Alignment:
| Q |
20 |
attgagacatcctcttttactcgacacgaaatgcactctagaccccaactttttccagccacattaatggactcctgcaacaattttgtcacaattaaat |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42575376 |
attgagacatcctcttttactcgacacgaaatgcactctagaccccaactttttccagccacattaatggactcctgcaacaattttgtcacaattaaat |
42575277 |
T |
|
| Q |
120 |
aaccagtatgaaatatggctgcagatgatgaaagagttgttctttatatcccttcaagaaaagnnnnnnnnttcttaacagcatatttatatctcatagg |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
42575276 |
aaccagtatgaaatatggctgcagatgatgaaagagttgttctttatatcc-ttcaagaaaagaaaaaaaattcttaacagcatatttatatctcatagg |
42575178 |
T |
|
| Q |
220 |
ttaaaaccaaaatacaaggttgacacatatggaagagcaagctcgtatcttttggttcatgtttgttatcaattgttattgctatattctaacatctaag |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42575177 |
ttaaaaccaaaatacaaggttgacacatatggaagagcaagctcgtatcttttggttcatgtttgttatcaattgttattgctatattctaacatctaag |
42575078 |
T |
|
| Q |
320 |
caggttgagcttctgtttaagttatttaggattacaattgaatttgatgtcataaaaactagattattggctttttatattatctagtattttatgctta |
419 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
42575077 |
caggttgagcttctgtttaagttatttaggattacaattgaatttgatgtcataaaaactagattattggcttttgatattatctagtattttatgctta |
42574978 |
T |
|
| Q |
420 |
tattatcatactccaactcaaaacttatttgagatgcttttgattaata----gtgttttcttctttcatagagtatctgatatatgagtagcaggagca |
515 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42574977 |
tattatcatactccaactcaaaacttatttgagatgcttttgattaataaatagtgttttcttctttcatagagtatctgatatatgagtagcaggagca |
42574878 |
T |
|
| Q |
516 |
attttcccaagaggagtacttatgagaggatgaacaacccaagaaaatgcacttctagttcttggaaacacaagacaatcctaagctgcaaaaaggaata |
615 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| ||| |
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|
| T |
42574877 |
attttcccaagaggagtacttatgggaggatgaacaacccaagaaaatgcacttctagttcttggaaacacaagacagtcttaagctgcaaaaagggata |
42574778 |
T |
|
| Q |
616 |
gcatgcaaactcaaatattttgaggaacttaaagtcaggaagttgactaaacggtttaaagtaggatgagttaagctgcaaaacagtgggttgcattctg |
715 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42574777 |
gcatgcaaactcaaatattttgaggaacttaaagtcaggaagttgactaaatggtttaaagtaggatgagttaagctgcaaaacagtgggttgcattctg |
42574678 |
T |
|
| Q |
716 |
taattatgagaaaagctttgagaaagcaatggtcccaacatgtgaaattggatattggtctgaactctgaatcagtgaactgcccaatagttttgaaatt |
815 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42574677 |
taattatgagaaaagctttgagaaagcaatggtcccaacatgtgaaattggatattggtctgaactctgaatcagtgaactgcccaatagttttgaaatt |
42574578 |
T |
|
| Q |
816 |
tacaagagtggaattaaggttgttgcaggagaagggctactggattttagaggggaaaaagatattatgttggaagttgttttgcagaagttgagaggtc |
915 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42574577 |
tacaagagtggaattaaggttgttgcaggagaagggctactgga--ttagaggggaaaaagatattatgttggaagttgttttgcagaagttgagaggtc |
42574480 |
T |
|
| Q |
916 |
atgtctctttgtaatgtggggg |
937 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
42574479 |
atgtctctttgtaatgtggggg |
42574458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 90; E-Value: 6e-43
Query Start/End: Original strand, 52 - 304
Target Start/End: Complemental strand, 42571982 - 42571730
Alignment:
| Q |
52 |
gcactctagaccccaactttttccagccacattaatggactcctgcaacaattttgtcacaattaaa-taaccagtatgaaatatggctgcagatgatga |
150 |
Q |
| |
|
||||||||||||||| |||||| ||||| |||||||||||||||||||||||| ||| ||||||||| |||||| ||||||||||| ||||||||||||| |
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|
| T |
42571982 |
gcactctagaccccatctttttgcagccgcattaatggactcctgcaacaattatgtaacaattaaattaaccattatgaaatatgactgcagatgatga |
42571883 |
T |
|
| Q |
151 |
aagagttgttctttatatcccttcaagaaaagnnnnnnnnttcttaacagcatatttatatctcataggttaaaaccaaaatacaaggttgacacatatg |
250 |
Q |
| |
|
||||||||||||||||| ||||| | ||| ||| ||| |||||||| || | ||| ||||||| |||||||||||||||| | | || |
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|
| T |
42571882 |
cagagttgttctttatat-acttcatggaaaattttaaaactctcaacttcatatttacatttggtagattaaaacaaaaatacaaggttgactcctttg |
42571784 |
T |
|
| Q |
251 |
gaagagcaagctcgtatcttttggttcatgtttgttatcaattgttattgctat |
304 |
Q |
| |
|
||||||||||||| || ||||||| |||||||||||||| | | |||||||||| |
|
|
| T |
42571783 |
gaagagcaagctcatagcttttggatcatgtttgttatctactattattgctat |
42571730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 82; E-Value: 4e-38
Query Start/End: Original strand, 52 - 357
Target Start/End: Complemental strand, 42579110 - 42578805
Alignment:
| Q |
52 |
gcactctagaccccaactttttccagccacattaatggactcctgcaacaattttgtcacaattaaataaccagtatgaaatatggctgcagatgatgaa |
151 |
Q |
| |
|
||||||||||||||| |||||| |||||||||||||||||||||||||||| ||||| |||||| ||||||| |||||||||| |||||| |||||||| |
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|
| T |
42579110 |
gcactctagaccccacctttttgcagccacattaatggactcctgcaacaaatttgtaacaatt--ataaccattatgaaatatagctgcaaatgatgaa |
42579013 |
T |
|
| Q |
152 |
agagttgttctttatatcc--cttcaagaaaagnnnnnnnnttcttaacagcatatttatatctcataggttaaaaccaaaatacaaggttgacacatat |
249 |
Q |
| |
|
||||||||||||||||| | |||| | ||| | ||| | ||| |||| ||| ||| ||||||| |||||||||||||||| | | | |
|
|
| T |
42579012 |
agagttgttctttatatacttcttcgtggaaaattttaaagcttttaccttcatgtttacgtctggtagattaaaacaaaaatacaaggttgactccttt |
42578913 |
T |
|
| Q |
250 |
ggaagagcaagctcgtatcttttggttcatgtttgttatcaattgttattgctatattctaacatctaagcaggttgagcttctgtttaagttatttagg |
349 |
Q |
| |
|
| |||||||||||| || ||||||||||||||| |||| | | | | ||| |||| ||||||||||||||||||| || |||||| ||||| |||| || |
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|
| T |
42578912 |
gaaagagcaagctcatagcttttggttcatgttcgttaactactatcatttctatgctctaacatctaagcaggtttagtttctgtgtaagtcatttggg |
42578813 |
T |
|
| Q |
350 |
attacaat |
357 |
Q |
| |
|
||||||| |
|
|
| T |
42578812 |
tttacaat |
42578805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 445 - 569
Target Start/End: Complemental strand, 42571305 - 42571179
Alignment:
| Q |
445 |
tatttgagatgcttttgattaata----gtgttttcttctttcatagagtatctgatatatgagtagcaggagcaattttcccaagaggagtacttatga |
540 |
Q |
| |
|
|||||||||||||||||||||||| ||||| ||||| |||| ||||||||||||||||||||||||||||| |||||| |||||||||||||| | |
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|
| T |
42571305 |
tatttgagatgcttttgattaataaatagtgttctcttcattca--gagtatctgatatatgagtagcaggagcagttttcctaagaggagtacttacgg |
42571208 |
T |
|
| Q |
541 |
gaggatgaacaacccaagaaaatgcactt |
569 |
Q |
| |
|
||||| ||| ||||||||||||||||||| |
|
|
| T |
42571207 |
gaggaagaataacccaagaaaatgcactt |
42571179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 63; E-Value: 8e-27
Query Start/End: Original strand, 965 - 1039
Target Start/End: Complemental strand, 42574445 - 42574371
Alignment:
| Q |
965 |
aggactatcctgcctgcatcgtcatcttactgctacataattattatgcggtagaaattgttggtattaataata |
1039 |
Q |
| |
|
||||||||||||||| |||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
42574445 |
aggactatcctgccttcatcgtcatcttgctgctacataatcattatgcggtagaaattgttggtattaataata |
42574371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 58; E-Value: 8e-24
Query Start/End: Original strand, 607 - 716
Target Start/End: Complemental strand, 42578473 - 42578365
Alignment:
| Q |
607 |
aaaggaatagcatgcaaactcaaatattttgaggaacttaaagtcaggaagttgactaaacggtttaaagtaggatgagttaagctgcaaaacagtgggt |
706 |
Q |
| |
|
||||| ||||||||||||| || ||||||||||||| |||||||||||||||| |||| | |||||| ||| |||||| ||||||||||||| ||||||| |
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|
| T |
42578473 |
aaagggatagcatgcaaacccagatattttgaggaaattaaagtcaggaagtt-actatatggtttagagtgggatgaattaagctgcaaaagagtgggt |
42578375 |
T |
|
| Q |
707 |
tgcattctgt |
716 |
Q |
| |
|
|| ||||||| |
|
|
| T |
42578374 |
tgaattctgt |
42578365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 58; E-Value: 8e-24
Query Start/End: Original strand, 52 - 168
Target Start/End: Complemental strand, 42610053 - 42609936
Alignment:
| Q |
52 |
gcactctagaccccaactttttccagccacattaatggactcctgcaacaattttgtcacaattaaa-taaccagtatgaaatatggctgcagatgatga |
150 |
Q |
| |
|
|||||| ||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||||| ||| |||| |||| |||||| | | |
|
|
| T |
42610053 |
gcactcaagaccccaactttgggcagccacattaatggactcctgcaacaattttttcacaattaaattaaccattattaaatttggcggcagataacgg |
42609954 |
T |
|
| Q |
151 |
aagagttgttctttatat |
168 |
Q |
| |
|
||||||| |||||||||| |
|
|
| T |
42609953 |
aagagttattctttatat |
42609936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 465 - 538
Target Start/End: Complemental strand, 42578614 - 42578541
Alignment:
| Q |
465 |
aatagtgttttcttctttcatagagtatctgatatatgagtagcaggagcaattttcccaagaggagtacttat |
538 |
Q |
| |
|
||||||||||||||| |||||| ||||||||||||| ||||| ||||||||||||| | ||||||||||||||| |
|
|
| T |
42578614 |
aatagtgttttcttcattcataaagtatctgatataggagtaacaggagcaatttttctaagaggagtacttat |
42578541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 619 - 688
Target Start/End: Complemental strand, 42609291 - 42609222
Alignment:
| Q |
619 |
tgcaaactcaaatattttgaggaacttaaagtcaggaagttgactaaacggtttaaagtaggatgagtta |
688 |
Q |
| |
|
||||||| |||| |||||||||||||| |||||||||||||| ||||||||||| ||||| | |||||| |
|
|
| T |
42609291 |
tgcaaacccaaacattttgaggaacttgtagtcaggaagttgattaaacggtttatagtagaacgagtta |
42609222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 4e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 607 - 704
Target Start/End: Original strand, 27868968 - 27869065
Alignment:
| Q |
607 |
aaaggaatagcatgcaaactcaaatattttgaggaacttaaagtcaggaagttgactaaacggtttaaagtaggatgagttaagctgcaaaacagtgg |
704 |
Q |
| |
|
||||| ||||||||||||| | | ||||| |||||||| |||||||||||||| ||||| ||||| ||||| |||||||||||||||||||||||| |
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|
| T |
27868968 |
aaagggatagcatgcaaaccctgaaatttttaggaacttgtagtcaggaagttgattaaacagtttatagtagaatgagttaagctgcaaaacagtgg |
27869065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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