View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9187_low_5 (Length: 421)
Name: NF9187_low_5
Description: NF9187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9187_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 149; Significance: 1e-78; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 1 - 188
Target Start/End: Complemental strand, 34584726 - 34584545
Alignment:
| Q |
1 |
atgagtaaacacacttcaactgaatagaagataatttcaaaacaatttattgaagaaaagattcaagggactcttgacaacatattcaaaagcaagagta |
100 |
Q |
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|||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
34584726 |
atgagtaaacactcttcaactgaataaaagataatttcaaaacaatttattgaagaaaagattcaagggactcttgacaacatatacaaaagcaagagta |
34584627 |
T |
|
| Q |
101 |
aaaatgaatggacatttatatatctaaaaaataacagacattgaatccctctttttaagtcctgttttcttgtacagtccacttatcc |
188 |
Q |
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| T |
34584626 |
aaaatgaatggacatttatatatctaaaaaataacagacattga------ctttttaagtcctgttttcttgaacagtccacttatcc |
34584545 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 192 - 279
Target Start/End: Original strand, 34583071 - 34583158
Alignment:
| Q |
192 |
tttttaactcaatttttgccatggcgaccaatgtcactctcccaataaccctccagataacaacaaaactctaataaagagtcgacaa |
279 |
Q |
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| T |
34583071 |
tttttaactcaatttttgccatggcgaccaatgtcactctcccaataaccctccagataacaacaaaactctaataaagagtcgacaa |
34583158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 156
Target Start/End: Complemental strand, 34586164 - 34586015
Alignment:
| Q |
1 |
atgagtaaacacacttcaactga--atagaagataatttcaaaacaatttattgaagaaaaga----ttcaagggactcttgacaacatattcaaaagca |
94 |
Q |
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|||||||||||||||||| |||| ||| ||||||||||||||||||| |||||||||||||| || ||||||||| ||||||||| |||||||| |
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| T |
34586164 |
atgagtaaacacacttcacctgatcataaaagataatttcaaaacaatctattgaagaaaagaaagatttcagggactcta-acaacatatacaaaagca |
34586066 |
T |
|
| Q |
95 |
agagtaaaaatgaatggacatttatatatctaaaaaataacagacattgaatccctcttttt |
156 |
Q |
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| T |
34586065 |
agagtaaaaa-----------ttatataactaaaatataacagactttgaatccctcttttt |
34586015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 19179839 - 19179735
Alignment:
| Q |
1 |
atgagtaaacacacttcaactga--atagaagataatttcaaaacaatttattgaagaaaagattcaagggactcttgacaacatattcaaaagcaagag |
98 |
Q |
| |
|
||||||||||||||| |||||| ||| |||| |||||||||||||| |||| ||||||||||||||||||||| ||||||||||| |||||||||||| |
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| T |
19179839 |
atgagtaaacacact-caactgctcataaaagacaatttcaaaacaatctatttaagaaaagattcaagggactc-tgacaacatatacaaaagcaagag |
19179742 |
T |
|
| Q |
99 |
taaaaat |
105 |
Q |
| |
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||||||| |
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|
| T |
19179741 |
taaaaat |
19179735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 1478219 - 1478115
Alignment:
| Q |
1 |
atgagtaaacacacttcaactga--atagaagataatttcaaaacaatttattgaagaaaagattcaagggactcttgacaacatattcaaaagcaagag |
98 |
Q |
| |
|
||||||||||||||| |||||| ||| |||| |||||||||||||| |||| ||||||||||||||||||||| ||||||||||| |||||||||||| |
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| T |
1478219 |
atgagtaaacacact-caactgctcataaaagacaatttcaaaacaatctatttaagaaaagattcaagggactc-tgacaacatatacaaaagcaagag |
1478122 |
T |
|
| Q |
99 |
taaaaat |
105 |
Q |
| |
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| ||||| |
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|
| T |
1478121 |
ttaaaat |
1478115 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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