View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9187_low_6 (Length: 372)
Name: NF9187_low_6
Description: NF9187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9187_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 37 - 337
Target Start/End: Complemental strand, 25414653 - 25414358
Alignment:
| Q |
37 |
aacctgtgtcattcacacaaaatagcaacaataataggttaggtcgttagcacccaaataaatttcattaacacattctccttttgatttaaattatagt |
136 |
Q |
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| T |
25414653 |
aacctgtgtcattcacacaaaatagcaacaata---ggttaggtcgttagaacccaaataaatttcattaacacattctccttttgatttaaattatagt |
25414557 |
T |
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| Q |
137 |
gtagcatattatttttggaatgtatcctacttgaataggttaggacccaaataaattttatgtgatgggtgaattgtttgttagaagagataaaatctga |
236 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25414556 |
gtagcatattatttttggaatgtatcctacttgaataggttaggacccaaataaattttatgtgatgggtgaattgtttgttagaagagataaaatctga |
25414457 |
T |
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| Q |
237 |
atatgtgtttgtaactggtggatagttgtcaccttacaaatcagttttataagtgttcaattaggttaaactcaaaatcttatatggtattgtgcctacc |
336 |
Q |
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|||||||||||||| ||||||||||||||||||||||||| |||||||||| ||| | |||||||||||||||||||||| ||||||| ||||||||| |
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| T |
25414456 |
--atgtgtttgtaacttgtggatagttgtcaccttacaaatcggttttataagggtttagttaggttaaactcaaaatcttagatggtatcgtgcctacc |
25414359 |
T |
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