View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9188_low_1 (Length: 930)
Name: NF9188_low_1
Description: NF9188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9188_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 606; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 606; E-Value: 0
Query Start/End: Original strand, 102 - 922
Target Start/End: Original strand, 21267656 - 21268472
Alignment:
| Q |
102 |
attatatattgtcatttgattcgatcgtggttaaaccaattgaacaaatccaacgtaccacacttannnnnnnnnnnnnncatgaaaaagtagctcattt |
201 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| ||| ||| ||||||||||| |||| |
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| T |
21267656 |
attatatattgtcatgcgattcgatcgtggttaaaccaattgaacaaatccaatgtaccacatttatttttattttttt-cataaaaaagtagctaattt |
21267754 |
T |
|
| Q |
202 |
gtttgatatcatcttattcattcataccatctggacaaaaatttctatgaataatgtacaaatttactatgaatggaatattcttttgaacctcatccta |
301 |
Q |
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||||||| ||||||||||||||||||| || |||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
21267755 |
gtttgatgtcatcttattcattcatactatgtggacaaaaaattctatgaataatgtacaaatttactattaatggaatattcttttgaacctcatccta |
21267854 |
T |
|
| Q |
302 |
gatcttgtttatgttttaaaagccaaagagatnnnnnnnnntgacaaaatactattctatatacatcgtggattgctcaacctctaacataagtcgcatt |
401 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| | ||||||| |||| |
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| T |
21267855 |
gatcttgtttatgttttaaaagccaaagagataaagaaa--tgacaaaatactattctatatacatcgtggattactcaacctctgatataagtcacatt |
21267952 |
T |
|
| Q |
402 |
atactcataaattttatacgatcagaagcatcaatcaaatatatttataaaacaattctcaaaagacagcatcgaagtccaatctaattgaagtttgaca |
501 |
Q |
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||||||||||||||| |||||||||||||| |||||||||| ||| | ||||||||| ||||||||||||||||| |||||||||||||||||||||||| |
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| T |
21267953 |
atactcataaattttgtacgatcagaagcaacaatcaaatacattcacaaaacaattatcaaaagacagcatcgaggtccaatctaattgaagtttgaca |
21268052 |
T |
|
| Q |
502 |
atagattagatgaaaacacaaatcacatgtagtttttacctagcaacaaagaggcaacaagaagtttcatacacttttggtcaaatcaatataataaaac |
601 |
Q |
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||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| |
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| T |
21268053 |
atagattagatgaaaacacaaatcagatgtagcttttacctagcaacaaagaggcaacaag---tttcatacacttttggtcaaatcaatagaataaaac |
21268149 |
T |
|
| Q |
602 |
cataaacccaacaaattaagttgttaattaactaactaattaatgacttaattaaaatactcaacaaaa-ggtacttttgaa-ccatgagaaagtgggtc |
699 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| ||||||||||||||||| |
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| T |
21268150 |
cataaacccaacaaattaagttgttaattaactaactaattaatgacttaattaaaatactcaagaaaaaggtacttttgaagccatgagaaagtgggtc |
21268249 |
T |
|
| Q |
700 |
caataattcctttctttctttccacacaacacaacaaatacgcgcagcaagcatgatcgtttcttcttcccactacttatacccttaaaagcgttacttc |
799 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21268250 |
caataattcctttctttctttccacacaacacaacaaatacgcgcagcaagcatgatcgtttcttcttcccactacttatacccttaaaagcgttacttc |
21268349 |
T |
|
| Q |
800 |
cacaactaattattattcattcctaaaacagttacaaaacacaaacacattccaattccgaatcacacttttcttcttcttcttccaaaacctttcaaca |
899 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21268350 |
cacaactaattattattcattcctaaaacagttacaaaacacaaacacattccaattccgaatcacacttttcttcttcttcttccaaaacctttcaaca |
21268449 |
T |
|
| Q |
900 |
atggcggtaataacaccaaactc |
922 |
Q |
| |
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|||||||||||||||||| |||| |
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| T |
21268450 |
atggcggtaataacaccacactc |
21268472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 18 - 63
Target Start/End: Original strand, 21267515 - 21267559
Alignment:
| Q |
18 |
attagaaacccctcaattttgtcgtgttaagattatcctagttata |
63 |
Q |
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| T |
21267515 |
attagaaacccctcaattt-gtcgtgttaagattatcctagttata |
21267559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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