View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9188_low_2 (Length: 437)

Name: NF9188_low_2
Description: NF9188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9188_low_2
NF9188_low_2
[»] chr1 (3 HSPs)
chr1 (12-419)||(33768852-33769253)
chr1 (78-416)||(33764052-33764390)
chr1 (77-416)||(33772193-33772532)
[»] chr4 (3 HSPs)
chr4 (181-335)||(41238474-41238628)
chr4 (239-356)||(49465214-49465331)
chr4 (246-356)||(8349194-8349304)
[»] chr8 (5 HSPs)
chr8 (223-347)||(25224812-25224936)
chr8 (221-347)||(26168446-26168572)
chr8 (247-356)||(26396048-26396157)
chr8 (243-356)||(1093114-1093227)
chr8 (247-337)||(15688402-15688492)
[»] chr7 (4 HSPs)
chr7 (213-356)||(29462850-29462993)
chr7 (245-356)||(19844605-19844716)
chr7 (239-332)||(19890486-19890579)
chr7 (308-358)||(19877567-19877617)
[»] chr2 (2 HSPs)
chr2 (277-335)||(28642196-28642254)
chr2 (277-337)||(28691399-28691459)


Alignment Details
Target: chr1 (Bit Score: 340; Significance: 0; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 12 - 419
Target Start/End: Original strand, 33768852 - 33769253
Alignment:
Q  12 ataatacttgtagtactctctaagtgacataactttgcccgatccaaaaattaaaatgaacattaattacctggatacttgcggtatttcttctggatcg 111  Q
    |||||||||||||||||||  ||||||||||||||||| |||| |||||| ||||| ||||||||    |||| ||||||||||||||||||||||||||    
T  33768852 ataatacttgtagtactct--aagtgacataactttgcacgatacaaaaaataaaacgaacatta----cctgcatacttgcggtatttcttctggatcg 33768945  T
Q  112 ggaggattgggacttacaaaaaatgaaattgagtccctccagttggcagcagggtccttaaaaaggctaccattagagaaatatcgaactttcttacttg 211  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||     
T  33768946 ggaggattgggacttacaaaaaatgaaagtgagtccctccagttggcagcagggtccgtaaaaaggctaccattagagaaatatcgaactttcttacttt 33769045  T
Q  212 tatcccttgtataaaatggtttccttgcatcagcatcttgttcatgaaacctacggattccactaatcatctcatccaaaacactaactggaataccatg 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||    
T  33769046 tatcccttgtataaaatggtttccttgcatcagcatcttgttcatgaaacctacggattccactaatcatctcatccaaaacaataaccggaataccatg 33769145  T
Q  312 attaatcacttgaaaaaatccccactccttgcatgcacttcgaatcttctcaagtacctcagcatgtaaacatggatcagtgtttatatcttgaaggtct 411  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33769146 attaatcacttgaaaaaatccccactccttgcatgcacttcgaatcttctcaagtacctcagcatgtaaacatggatcagtgtttatatcttgaaggtct 33769245  T
Q  412 atgatagg 419  Q
    ||||||||    
T  33769246 atgatagg 33769253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 78 - 416
Target Start/End: Original strand, 33764052 - 33764390
Alignment:
Q  78 ttacctggatacttgcggtatttcttctggatcgggaggattgggacttacaaaaaatgaaattgagtccctccagttggcagcagggtccttaaaaagg 177  Q
    ||||||| ||||||| ||||||||||||||||  |||||||  |||||   |||||||| ||||| |||||||||||| |||||||||||| ||||||||    
T  33764052 ttacctgcatacttgtggtatttcttctggattaggaggatcaggactagtaaaaaatgcaattgtgtccctccagttagcagcagggtccctaaaaagg 33764151  T
Q  178 ctaccattagagaaatatcgaactttcttacttgtatcccttgtataaaatggtttccttgcatcagcatcttgttcatgaaacctacggattccactaa 277  Q
     |||||||||| |||||||  ||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| | |||     
T  33764152 gtaccattagaaaaatatctgactttcttacttgtatcccttgtataaaatggtttccttgcatcaacttcttgttcatgaaacctacggattgcgctag 33764251  T
Q  278 tcatctcatccaaaacactaactggaataccatgattaatcacttgaaaaaatccccactccttgcatgcacttcgaatcttctcaagtacctcagcatg 377  Q
    |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| || |||| ||||||| ||||    
T  33764252 tcatctcatccaaaacactaaccggaataccatgattaatcacttggaaaaatccccactccttgcatgcactacgaattttgtcaactacctcaacatg 33764351  T
Q  378 taaacatggatcagtgtttatatcttgaaggtctatgat 416  Q
     |||||||||| |||||| |||||||||||||| |||||    
T  33764352 caaacatggattagtgttcatatcttgaaggtcaatgat 33764390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 77 - 416
Target Start/End: Original strand, 33772193 - 33772532
Alignment:
Q  77 attacctggatacttgcggtatttcttctggatcgggaggattgggacttacaaaaaatgaaattgagtccctccagttggcagcagggtccttaaaaag 176  Q
    |||||||| ||||||| ||||||||||||||||  |||||||  ||||||||| |||| ||||||| |||||||||||| |||||| ||| |||||||||    
T  33772193 attacctgcatacttgaggtatttcttctggattaggaggatcaggacttacataaaaagaaattgtgtccctccagttagcagcatggttcttaaaaag 33772292  T
Q  177 gctaccattagagaaatatcgaactttcttacttgtatcccttgtataaaatggtttccttgcatcagcatcttgttcatgaaacctacggattccacta 276  Q
    ||| ||||| |||||||||| ||||||||||||||||||||||||||| |||||||||||| | || || ||||||||||||||||||||||||||||||    
T  33772293 gcttccattggagaaatatctaactttcttacttgtatcccttgtatagaatggtttcctttcctcggcttcttgttcatgaaacctacggattccacta 33772392  T
Q  277 atcatctcatccaaaacactaactggaataccatgattaatcacttgaaaaaatccccactccttgcatgcacttcgaatcttctcaagtacctcagcat 376  Q
    ||||||||||||||||| ||| ||||||||||||||||||||||||||||| ||||||| ||    || |||||||||||||| ||||||||||||||||    
T  33772393 atcatctcatccaaaacgctatctggaataccatgattaatcacttgaaaacatccccattcacgacaagcacttcgaatcttgtcaagtacctcagcat 33772492  T
Q  377 gtaaacatggatcagtgtttatatcttgaaggtctatgat 416  Q
    | |||||||| |  |||| ||||| |||||||||||||||    
T  33772493 gcaaacatgggtttgtgtgtatattttgaaggtctatgat 33772532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 67; Significance: 1e-29; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 181 - 335
Target Start/End: Complemental strand, 41238628 - 41238474
Alignment:
Q  181 ccattagagaaatatcgaactttcttacttgtatcccttgtataaaatggtttccttgcatcagcatcttgttcatgaaacctacggattccactaatca 280  Q
    |||||||||||||| | ||||||||||  | |||| ||||  ||||| |||||| | || |||||||||||||||||||| ||||  |||||| | ||||    
T  41238628 ccattagagaaatacctaactttcttatctttatctcttgagtaaaagggtttcttagcttcagcatcttgttcatgaaatctacaaattccattgatca 41238529  T
Q  281 tctcatccaaaacactaactggaataccatgattaatcacttgaaaaaatcccca 335  Q
    ||||||||||||||  || ||||||||||||||| |||||||| |||||||||||    
T  41238528 tctcatccaaaacatgaagtggaataccatgattgatcacttggaaaaatcccca 41238474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 239 - 356
Target Start/End: Original strand, 49465214 - 49465331
Alignment:
Q  239 catcagcatcttgttcatgaaacctacggattccactaatcatctcatccaaaacactaactggaataccatgattaatcacttgaaaaaatccccactc 338  Q
    |||||||||||||||||||||| ||||||||||||  |||||| |||||||| ||  |||  |||||  ||||||||||||| |||||||||||||||||    
T  49465214 catcagcatcttgttcatgaaagctacggattccatcaatcatttcatccaagacggtaatgggaatttcatgattaatcacctgaaaaaatccccactc 49465313  T
Q  339 cttgcatgcacttcgaat 356  Q
     | |||||||||||||||    
T  49465314 atggcatgcacttcgaat 49465331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 246 - 356
Target Start/End: Complemental strand, 8349304 - 8349194
Alignment:
Q  246 atcttgttcatgaaacctacggattccactaatcatctcatccaaaacactaactggaataccatgattaatcacttgaaaaaatccccactccttgcat 345  Q
    ||||||||||||||||||||| ||||||  |||  | |||||||| ||| |||  ||||| |||||||||||||||| ||||||||||||||||||||||    
T  8349304 atcttgttcatgaaacctacgaattccatcaattgtttcatccaatacattaatgggaattccatgattaatcactttaaaaaatccccactccttgcat 8349205  T
Q  346 gcacttcgaat 356  Q
    ||| |||||||    
T  8349204 gcagttcgaat 8349194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 65; Significance: 2e-28; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 223 - 347
Target Start/End: Original strand, 25224812 - 25224936
Alignment:
Q  223 taaaatggtttccttgcatcagcatcttgttcatgaaacctacggattccactaatcatctcatccaaaacactaactggaataccatgattaatcactt 322  Q
    |||||| |||| ||| | |||| ||||||||||||||||||||| |||||| ||||  | |||||||| ||| ||| |||||| ||||||||||||||||    
T  25224812 taaaattgttttcttacttcaggatcttgttcatgaaacctacgaattccattaattgtttcatccaatacattaattggaattccatgattaatcactt 25224911  T
Q  323 gaaaaaatccccactccttgcatgc 347  Q
    ||||||||||| |||||||||||||    
T  25224912 gaaaaaatccctactccttgcatgc 25224936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 221 - 347
Target Start/End: Complemental strand, 26168572 - 26168446
Alignment:
Q  221 tataaaatggtttccttgcatcagcatcttgttcatgaaacctacggattccactaatcatctcatccaaaacactaactggaataccatgattaatcac 320  Q
    |||||||| |||||||| | || | ||||||||||||||||||||| ||||||  |||  | |||||||| |||  ||  ||||| ||||||||||||||    
T  26168572 tataaaattgtttccttacttcgggatcttgttcatgaaacctacgaattccatcaattgtttcatccaatacatcaatgggaattccatgattaatcac 26168473  T
Q  321 ttgaaaaaatccccactccttgcatgc 347  Q
    |||||||||||||||||||||||||||    
T  26168472 ttgaaaaaatccccactccttgcatgc 26168446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 247 - 356
Target Start/End: Complemental strand, 26396157 - 26396048
Alignment:
Q  247 tcttgttcatgaaacctacggattccactaatcatctcatccaaaacactaactggaataccatgattaatcacttgaaaaaatccccactccttgcatg 346  Q
    |||||||||||||||||||| | ||||  || ||| |||||||| |||| ||  |||||  |||||||||||||||||||||||||||||||||| ||||    
T  26396157 tcttgttcatgaaacctacgaaatccatcaagcatttcatccaatacacaaatgggaatttcatgattaatcacttgaaaaaatccccactccttacatg 26396058  T
Q  347 cacttcgaat 356  Q
    || |||||||    
T  26396057 cagttcgaat 26396048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 243 - 356
Target Start/End: Complemental strand, 1093227 - 1093114
Alignment:
Q  243 agcatcttgttcatgaaacctacggattccactaatcatctcatccaaaacactaactggaataccatgattaatcacttgaaaaaatccccactccttg 342  Q
    |||||||||||| |||||| |||  ||||||  |||||| |||||||| ||| |||  |||||  |||||||||| |  ||||||||||||||||| | |    
T  1093227 agcatcttgttcgtgaaacttactaattccatcaatcatttcatccaagacattaatgggaatttcatgattaattatctgaaaaaatccccactcatgg 1093128  T
Q  343 catgcacttcgaat 356  Q
    ||||||||| ||||    
T  1093127 catgcactttgaat 1093114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 247 - 337
Target Start/End: Original strand, 15688402 - 15688492
Alignment:
Q  247 tcttgttcatgaaacctacggattccactaatcatctcatccaaaacactaactggaataccatgattaatcacttgaaaaaatccccact 337  Q
    |||||||||||||| |||   | ||||  |||||| |||||||||||| ||  |||||||||||| || | ||||||||| ||||||||||    
T  15688402 tcttgttcatgaaatctaaccactccatcaatcatttcatccaaaacagtagatggaataccatggttgaccacttgaaagaatccccact 15688492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 64; Significance: 8e-28; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 213 - 356
Target Start/End: Complemental strand, 29462993 - 29462850
Alignment:
Q  213 atcccttgtataaaatggtttccttgcatcagcatcttgttcatgaaacctacggattccactaatcatctcatccaaaacactaactggaataccatga 312  Q
    ||||| |||||||||   ||| ||| |||| |||||||||||||||||||||| |||||||  |||||| |||||||| ||| |||  |||||  |||||    
T  29462993 atcccgtgtataaaactcttttcttacatcggcatcttgttcatgaaacctacagattccatcaatcatttcatccaagacaataataggaatttcatga 29462894  T
Q  313 ttaatcacttgaaaaaatccccactccttgcatgcacttcgaat 356  Q
    |||||||| ||||||||||||||||| | |||||||||||||||    
T  29462893 ttaatcacctgaaaaaatccccactcatggcatgcacttcgaat 29462850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 245 - 356
Target Start/End: Complemental strand, 19844716 - 19844605
Alignment:
Q  245 catcttgttcatgaaacctacggattccactaatcatctcatccaaaacactaactggaataccatgattaatcacttgaaaaaatccccactccttgca 344  Q
    ||||||||||||||||  |||||||||||  ||||||||||||||| ||| | |  |||||  ||||||||||||| ||||||||||||||||| |  ||    
T  19844716 catcttgttcatgaaagttacggattccatgaatcatctcatccaatacattgatgggaatttcatgattaatcacctgaaaaaatccccactcatgaca 19844617  T
Q  345 tgcacttcgaat 356  Q
    ||||||||||||    
T  19844616 tgcacttcgaat 19844605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 239 - 332
Target Start/End: Complemental strand, 19890579 - 19890486
Alignment:
Q  239 catcagcatcttgttcatgaaacctacggattccactaatcatctcatccaaaacactaactggaataccatgattaatcacttgaaaaaatcc 332  Q
    ||||| |||||||||||||||| ||||||||||||  |||||| |||||||| |||  ||  |||||| |||||||||| || |||||||||||    
T  19890579 catcaacatcttgttcatgaaaactacggattccatgaatcatttcatccaagacatcaatgggaatatcatgattaattacctgaaaaaatcc 19890486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 308 - 358
Target Start/End: Original strand, 19877567 - 19877617
Alignment:
Q  308 catgattaatcacttgaaaaaatccccactccttgcatgcacttcgaatct 358  Q
    ||||||||||||||||||||||||||||||| ||||| || ||| ||||||    
T  19877567 catgattaatcacttgaaaaaatccccactcattgcaggctctttgaatct 19877617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 277 - 335
Target Start/End: Original strand, 28642196 - 28642254
Alignment:
Q  277 atcatctcatccaaaacactaactggaataccatgattaatcacttgaaaaaatcccca 335  Q
    ||||||||||||||||||  ||||||||| |||||||| || |||||||| ||||||||    
T  28642196 atcatctcatccaaaacatgaactggaattccatgatttattacttgaaagaatcccca 28642254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 277 - 337
Target Start/End: Original strand, 28691399 - 28691459
Alignment:
Q  277 atcatctcatccaaaacactaactggaataccatgattaatcacttgaaaaaatccccact 337  Q
    ||||||||||||||||||  | ||| ||| |||||||| || |||||||| ||||||||||    
T  28691399 atcatctcatccaaaacatgagctgaaattccatgatttattacttgaaagaatccccact 28691459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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