View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9188_low_3 (Length: 371)
Name: NF9188_low_3
Description: NF9188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9188_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 35 - 353
Target Start/End: Complemental strand, 31860690 - 31860373
Alignment:
| Q |
35 |
tcatataaactgtgcatttgtaggtattgacccgagtaaatgggattctgtatttgaaagctttgagcaagctgatctatcaactactagactgtaagtg |
134 |
Q |
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| T |
31860690 |
tcatataaactgtgcatttgtaggtattgacccgagtaaatgggattctgtatttgaaagctttgagcaagctgatctatcaactactagactgtaagtg |
31860591 |
T |
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| Q |
135 |
atttatatatgtnnnnnnnnnctatacaatttggcgaggtgttacctttgagcaaacaaatcagcattacattattctctgctagttatttaccgaaaag |
234 |
Q |
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| T |
31860590 |
atttatatatgtaaaaaaaa-ctatacaatttggcgaggtgttacctttgagcaaacaaatcagcattacattattctctgctagttatttaccgaaaag |
31860492 |
T |
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| Q |
235 |
tcttttgaatgccactggctgaaggtacaaggagttcttaaaccttttttcttttcaggcatggaggcactggtcttggtctttgcattgttagatcctt |
334 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31860491 |
tcttttgaatgccactggctgaagatacaaggagttcttaaaccttttttcttttcaggcatggaggcactggtcttggtctttgcattgttagatcctt |
31860392 |
T |
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| Q |
335 |
ggtgagtaagactcttagg |
353 |
Q |
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| T |
31860391 |
ggtgagtaagactcttagg |
31860373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 54; Significance: 6e-22; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 55 - 132
Target Start/End: Original strand, 8868461 - 8868538
Alignment:
| Q |
55 |
taggtattgacccgagtaaatgggattctgtatttgaaagctttgagcaagctgatctatcaactactagactgtaag |
132 |
Q |
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| T |
8868461 |
taggtattgatccaagcaaatgggattctgtgtttgaaagctttgagcaagctgatccatcaactactcgactgtaag |
8868538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 287 - 345
Target Start/End: Original strand, 8868883 - 8868941
Alignment:
| Q |
287 |
tttcaggcatggaggcactggtcttggtctttgcattgttagatccttggtgagtaaga |
345 |
Q |
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||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| |
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| T |
8868883 |
tttcaggcatggagggactggtcttggtctttgcattgttaggaacttggtgagtaaga |
8868941 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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