View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9188_low_6 (Length: 242)
Name: NF9188_low_6
Description: NF9188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9188_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 146; Significance: 5e-77; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 56 - 224
Target Start/End: Original strand, 21880489 - 21880658
Alignment:
| Q |
56 |
taattgtgatatacatttcaactaatctggcacaagatctatgatagaatcat-aagttaaaggttttttcatctttaatctcaaatgtatctccaacct |
154 |
Q |
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| T |
21880489 |
taattgtgatatacatttcaactaatctgccataagatctatgatagaatcattaagtcaaaggttttttcatctttaatctcaaatgtatctccaacct |
21880588 |
T |
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| Q |
155 |
tcttatcatcagcaacctattcttgaggctcaatgttttcaacaatgaataaatcatcatatcctattat |
224 |
Q |
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| T |
21880589 |
tcttatcatcagcaacctattcttgaggctcaatgttttcaacaatgaataaatcatcatatcttattat |
21880658 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 21880406 - 21880453
Alignment:
| Q |
1 |
caaagaaagtgaatttatactaattaacatacacatatataattatat |
48 |
Q |
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| T |
21880406 |
caaagaaagtgaatttatactaactaacatacacatatataattatat |
21880453 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 224
Target Start/End: Original strand, 39832820 - 39832900
Alignment:
| Q |
144 |
atctccaaccttcttatcatcagcaacctattcttgaggctcaatgttttcaacaatgaataaatcatcatatcctattat |
224 |
Q |
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| T |
39832820 |
atctccaacctctttatgaatagcaacctttttttgaggatcaacattttcaacaatgaacaaattatcatctcctattat |
39832900 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 144 - 214
Target Start/End: Original strand, 9367676 - 9367746
Alignment:
| Q |
144 |
atctccaaccttcttatcatcagcaacctattcttgaggctcaatgttttcaacaatgaataaatcatcat |
214 |
Q |
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| T |
9367676 |
atctccaaccttcttatcaacaataaccttttctcgaggctcaggattttcaacaatgaacaaatcatcat |
9367746 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 154 - 214
Target Start/End: Complemental strand, 19840384 - 19840324
Alignment:
| Q |
154 |
ttcttatcatcagcaacctattcttgaggctcaatgttttcaacaatgaataaatcatcat |
214 |
Q |
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|||||||||||| |||| | ||||| |||||||| |||||||||||| || |||||||||| |
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| T |
19840384 |
ttcttatcatcaacaactttttctttaggctcaaggttttcaacaataaacaaatcatcat |
19840324 |
T |
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