View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9189_high_3 (Length: 329)

Name: NF9189_high_3
Description: NF9189
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9189_high_3
NF9189_high_3
[»] chr6 (1 HSPs)
chr6 (17-313)||(6685128-6685424)
[»] chr1 (2 HSPs)
chr1 (17-172)||(51759728-51759883)
chr1 (174-205)||(29277648-29277679)
[»] chr2 (1 HSPs)
chr2 (170-313)||(15515127-15515271)
[»] chr8 (1 HSPs)
chr8 (174-247)||(45354974-45355047)
[»] chr3 (2 HSPs)
chr3 (174-247)||(2551331-2551404)
chr3 (174-247)||(13847157-13847230)
[»] chr4 (1 HSPs)
chr4 (174-244)||(1153428-1153498)
[»] chr5 (3 HSPs)
chr5 (180-247)||(23760666-23760733)
chr5 (180-247)||(23826127-23826194)
chr5 (174-247)||(17039231-17039304)


Alignment Details
Target: chr6 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 17 - 313
Target Start/End: Original strand, 6685128 - 6685424
Alignment:
Q  17 agctcttagagatcaaaatcaaccagcaaaattggttctagcatgacaaaacataagttcaatctcatgtataataggtctgaaataaagcttaattacc 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6685128 agctcttagagatcaaaatcaaccagcaaaattggttctagcatgacaaaacataagttcaatctcatgtataataggtctgaaataaagcttaattacc 6685227  T
Q  117 aaacttcagctactcgagactctagttatgttattagaatttgaacacaataggaattcggcggattctcaagcatatcatgatccttctcaactttgan 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  6685228 aaacttcagctactcgagactctagttatgttattagaatttgaacacaataggaattcggcggattctcaagcatatcatgatccttctcaactttgat 6685327  T
Q  217 nnnnnnggccttgtgttcttttgacttgctaccttggtattcagtttaaaaatatagagtgagtattcaatttagctacccaaacaaatggaacttt 313  Q
          |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6685328 ttttttggccttgtgttcttttgacttgctaccttggtattcagtttaaaaatatagagtgagtattcaatttagctacccaaacaaatggaacttt 6685424  T

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Target: chr1 (Bit Score: 116; Significance: 5e-59; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 17 - 172
Target Start/End: Original strand, 51759728 - 51759883
Alignment:
Q  17 agctcttagagatcaaaatcaaccagcaaaattggttctagcatgacaaaacataagttcaatctcatgtataataggtctgaaataaagcttaattacc 116  Q
    |||| ||||||||||||||||| ||||||||| |||||||||||||||||||||| ||||||||||| |  ||||||| |||||||| || |||||||||    
T  51759728 agcttttagagatcaaaatcaagcagcaaaataggttctagcatgacaaaacataggttcaatctcacgagtaataggcctgaaatatagattaattacc 51759827  T
Q  117 aaacttcagctactcgagactctagttatgttattagaatttgaacacaataggaa 172  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51759828 aaacttcagctactcgagactctagttatgttattagaatttgaacacaataggaa 51759883  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 174 - 205
Target Start/End: Complemental strand, 29277679 - 29277648
Alignment:
Q  174 tcggcggattctcaagcatatcatgatccttc 205  Q
    ||||||||||||||||||||||||||||||||    
T  29277679 tcggcggattctcaagcatatcatgatccttc 29277648  T

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Target: chr2 (Bit Score: 84; Significance: 7e-40; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 170 - 313
Target Start/End: Original strand, 15515127 - 15515271
Alignment:
Q  170 gaattcggcggattctcaagcatatcatgatccttctcaactttgannnnnnnggccttgtgttcttttgacttgctaccttggtattcagtttaaaaat 269  Q
    ||||||||| |||||||||| |||||||||||||||||||||||||       ||||||||||||||||| |||| |||||||||||| |||||||||||    
T  15515127 gaattcggcagattctcaagtatatcatgatccttctcaactttgaattttttggccttgtgttcttttggcttggtaccttggtatttagtttaaaaat 15515226  T
Q  270 atagagtgagtattcaatttagctacccaaa-caaatggaacttt 313  Q
    ||| ||||||||||  ||||||||||||||| |||||||||||||    
T  15515227 ataaagtgagtatttgatttagctacccaaatcaaatggaacttt 15515271  T

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Target: chr8 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 174 - 247
Target Start/End: Complemental strand, 45355047 - 45354974
Alignment:
Q  174 tcggcggattctcaagcatatcatgatccttctcaactttgannnnnnnggccttgtgttcttttgacttgcta 247  Q
    ||||||||||||||||||||||||||||||||||||||||||       ||||| |||||||||||||||||||    
T  45355047 tcggcggattctcaagcatatcatgatccttctcaactttgatttttttggcctggtgttcttttgacttgcta 45354974  T

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Target: chr3 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 174 - 247
Target Start/End: Original strand, 2551331 - 2551404
Alignment:
Q  174 tcggcggattctcaagcatatcatgatccttctcaactttgannnnnnnggccttgtgttcttttgacttgcta 247  Q
    ||||||||||||||||||||||||||||||||||||||||||       ||||| |||||||||||||||||||    
T  2551331 tcggcggattctcaagcatatcatgatccttctcaactttgatttttttggcctggtgttcttttgacttgcta 2551404  T

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Target: chr3; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 174 - 247
Target Start/End: Original strand, 13847157 - 13847230
Alignment:
Q  174 tcggcggattctcaagcatatcatgatccttctcaactttgannnnnnnggccttgtgttcttttgacttgcta 247  Q
    ||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||| |||||||    
T  13847157 tcggcggattctcaagcatatcatgatccttctcaactttgatttttttggccttgtgttcttttggcttgcta 13847230  T

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Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 174 - 244
Target Start/End: Original strand, 1153428 - 1153498
Alignment:
Q  174 tcggcggattctcaagcatatcatgatccttctcaactttgannnnnnnggccttgtgttcttttgacttg 244  Q
    ||||||||||||||||||||||||||||||||||||||||||       ||||||| ||||||||||||||    
T  1153428 tcggcggattctcaagcatatcatgatccttctcaactttgatttttttggccttgcgttcttttgacttg 1153498  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 180 - 247
Target Start/End: Complemental strand, 23760733 - 23760666
Alignment:
Q  180 gattctcaagcatatcatgatccttctcaactttgannnnnnnggccttgtgttcttttgacttgcta 247  Q
    |||||||||||||||||| |||||||||||||||||       |||||||||||||||||||||||||    
T  23760733 gattctcaagcatatcataatccttctcaactttgatttttttggccttgtgttcttttgacttgcta 23760666  T

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Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 180 - 247
Target Start/End: Complemental strand, 23826194 - 23826127
Alignment:
Q  180 gattctcaagcatatcatgatccttctcaactttgannnnnnnggccttgtgttcttttgacttgcta 247  Q
    |||||||||||||||||| |||||||||||||||||       |||||||||||||||||||||||||    
T  23826194 gattctcaagcatatcataatccttctcaactttgatttttttggccttgtgttcttttgacttgcta 23826127  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 174 - 247
Target Start/End: Original strand, 17039231 - 17039304
Alignment:
Q  174 tcggcggattctcaagcatatcatgatccttctcaactttgannnnnnnggccttgtgttcttttgacttgcta 247  Q
    ||||| |||| |||| ||||||||||||||||||||||||||       ||||||||||||| |||||||||||    
T  17039231 tcggcagattttcaaacatatcatgatccttctcaactttgatttttttggccttgtgttctcttgacttgcta 17039304  T

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