View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9189_high_5 (Length: 244)
Name: NF9189_high_5
Description: NF9189
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9189_high_5 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 4 - 244
Target Start/End: Complemental strand, 1003245 - 1003004
Alignment:
| Q |
4 |
ataatactcctcctcctggaaaaaccaataatatataaatacatttccatattccaacttcataacacacacttcacactttcacgtaacaaacattaca |
103 |
Q |
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| T |
1003245 |
ataatactcctcctcctggaaaaaccaata---tataaatacatttccatattccaacttcataacacacacttcacactttcacgtaacaaacattaca |
1003149 |
T |
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| Q |
104 |
ataccttaacgataatattaacaagaaacacaacacttactaacaacgctgtttgaaggaa-aaaacaacacttacaacgttgtttggaaacaaaaacac |
202 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||| || |||||||| ||||||||| |||||||||||||||||||||||||||| |
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| T |
1003148 |
ataccttaacgataatattaacaagaaacacaacacttacttacaacgccgtctgaaggaaaaaaacaacagttacaacgttgtttggaaacaaaaacac |
1003049 |
T |
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| Q |
203 |
acaaccaaatggtgaaactcgaat---caactcttgaatcctccg |
244 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||| |
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| T |
1003048 |
acaaccaaatggtgaaactcgaatctacaactcttgaatcctccg |
1003004 |
T |
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