View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9189_low_14 (Length: 311)
Name: NF9189_low_14
Description: NF9189
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9189_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 249; Significance: 1e-138; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 10 - 294
Target Start/End: Complemental strand, 38166207 - 38165923
Alignment:
| Q |
10 |
gagtttggagttgcgacgttattatcattagagtttagaattgcaacggcaccacccggctcaatgatatcggtgccagttttctcctgttgttgttcca |
109 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
38166207 |
gagtttagagttgcgacgttattatcattagagtttagaattgcaacggcaccacccgactcaatgatatcggtgccagttttctcctgttgttgttcca |
38166108 |
T |
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| Q |
110 |
tgctatgctcagagggatcttgggctgaagccaactcatttaaatcaatttgaaggagggatgattgtatactttttcttccttccatgctttctatacc |
209 |
Q |
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||||||||||||||||||||||| |||||||| | |||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| |
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| T |
38166107 |
tgctatgctcagagggatcttggactgaagccggcccatttaaatcaatttgaaggaggggtaattgtatactttttcttccttccatgctttctatacc |
38166008 |
T |
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| Q |
210 |
aaaaatacaactataagaattcaaaaccaatttcatctaatttgaattatatcgacgtgcataatattttttgaatggtaaaaat |
294 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
38166007 |
aaaaatacaactataagaattcaaaaccaatttcatctaatttgaattatatcgacatgcataatattttttgaatggtaaaaat |
38165923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 10 - 294
Target Start/End: Original strand, 38173653 - 38173937
Alignment:
| Q |
10 |
gagtttggagttgcgacgttattatcattagagtttagaattgcaacggcaccacccggctcaatgatatcggtgccagttttctcctgttgttgttcca |
109 |
Q |
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|||||| ||||| ||||| |||||||||||||||||||||||||||||||| ||| | |||| ||||| ||||||||||||||||||||||||||||| |
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| T |
38173653 |
gagtttagagtttcgacgctattatcattagagtttagaattgcaacggcatgacctgactcatcgatattggtgccagttttctcctgttgttgttcca |
38173752 |
T |
|
| Q |
110 |
tgctatgctcagagggatcttgggctgaagccaactcatttaaatcaatttgaaggagggatgattgtatactttttcttccttccatgctttctatacc |
209 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38173753 |
tgctatgctcagagggatcttgggctgaagccgactcatttaaatcaatttgaaggagggatgattgtatactttttcttccttccatgctttctatacc |
38173852 |
T |
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| Q |
210 |
aaaaatacaactataagaattcaaaaccaatttcatctaatttgaattatatcgacgtgcataatattttttgaatggtaaaaat |
294 |
Q |
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|||||||||||||||||||||||||| |||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
38173853 |
aaaaatacaactataagaattcaaaatcaatttcatccaatttgaattatatcgacatgcataatattttttgaatggtaaaaat |
38173937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 10 - 294
Target Start/End: Original strand, 38200877 - 38201161
Alignment:
| Q |
10 |
gagtttggagttgcgacgttattatcattagagtttagaattgcaacggcaccacccggctcaatgatatcggtgccagttttctcctgttgttgttcca |
109 |
Q |
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|||||| ||||| ||||| |||||||||||||||||||||||||||||||| ||| | |||| ||||| ||||||||||||||||||||||||||||| |
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| T |
38200877 |
gagtttagagtttcgacgctattatcattagagtttagaattgcaacggcatgacctgactcatcgatattggtgccagttttctcctgttgttgttcca |
38200976 |
T |
|
| Q |
110 |
tgctatgctcagagggatcttgggctgaagccaactcatttaaatcaatttgaaggagggatgattgtatactttttcttccttccatgctttctatacc |
209 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38200977 |
tgctatgctcagagggatcttgggctgaagccgactcatttaaatcaatttgaaggagggatgattgtatactttttcttccttccatgctttctatacc |
38201076 |
T |
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| Q |
210 |
aaaaatacaactataagaattcaaaaccaatttcatctaatttgaattatatcgacgtgcataatattttttgaatggtaaaaat |
294 |
Q |
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|||||||||||||||||||||||||| |||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
38201077 |
aaaaatacaactataagaattcaaaatcaatttcatccaatttgaattatatcgacatgcataatattttttgaatggtaaaaat |
38201161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 181 - 294
Target Start/End: Complemental strand, 11590037 - 11589925
Alignment:
| Q |
181 |
ctttttcttccttccatgctttctataccaaaaata-caactataagaattcaaaaccaatttcatctaatttgaattatatcgacgtgcataatatttt |
279 |
Q |
| |
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|||||||||| ||||||| |||||||| |||||| | ||||||||| |||| ||||||||||||| ||||||||||| | || ||||||||||||| |
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| T |
11590037 |
ctttttcttctttccatgttttctataacaaaaaaaacaactataaaaatttgaaaccaatttcattaaatttgaattaaagaga--tgcataatatttt |
11589940 |
T |
|
| Q |
280 |
ttgaatggtaaaaat |
294 |
Q |
| |
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||||||||||||||| |
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| T |
11589939 |
ttgaatggtaaaaat |
11589925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 118 - 214
Target Start/End: Complemental strand, 11592978 - 11592885
Alignment:
| Q |
118 |
tcagagggatcttgggctgaagccaactcatttaaatcaatttgaaggagggatgattgtatactttttcttccttccatgctttctataccaaaaa |
214 |
Q |
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||||||||||||||| |||||||| ||||||||||||||| ||| | |||||| | |||||||||| ||||||||||||||||||||||| |
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| T |
11592978 |
tcagagggatcttggactgaagcccgctcatttaaatcaatatgatgagctaatgatttt---ctttttcttctttccatgctttctataccaaaaa |
11592885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 27 - 158
Target Start/End: Complemental strand, 11490737 - 11490609
Alignment:
| Q |
27 |
gttattatcattagagtttagaattgcaacggcaccacccggctcaatgatatcggtgccagttttctcctgttgttgttccatgctatgctcagaggga |
126 |
Q |
| |
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|||||||||||||| |||||||||||| | ||| ||||| |||||||| ||| ||| | ||||| ||||||||||||||||| |||||||||| |
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| T |
11490737 |
gttattatcattagggtttagaattgcggcagcatgacccgactcaatgacatcagtgtcgagattctc---ttgttgttccatgctattctcagaggga |
11490641 |
T |
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| Q |
127 |
tcttgggctgaagccaactcatttaaatcaat |
158 |
Q |
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||||| ||||| | ||||||||||||||| |
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| T |
11490640 |
tcttgaattgaagtccgctcatttaaatcaat |
11490609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 61
Target Start/End: Complemental strand, 11483264 - 11483230
Alignment:
| Q |
27 |
gttattatcattagagtttagaattgcaacggcac |
61 |
Q |
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||||||||||||||||||| ||||||||||||||| |
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| T |
11483264 |
gttattatcattagagtttggaattgcaacggcac |
11483230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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