View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9189_low_17 (Length: 254)
Name: NF9189_low_17
Description: NF9189
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9189_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 2836702 - 2836468
Alignment:
| Q |
1 |
tgtgaaatgacagagtgttagcatccatcaaaagtaatttatacataaacttaggtatgagagatagtataacgttcnnnnnnnntatatatataacgtc |
100 |
Q |
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| T |
2836702 |
tgtgaaataacggagtgttaacatccaccaaaagtaatttatacataaacttaggtatgagagatagtataacgttcaaaaaa---atatatataacgtc |
2836606 |
T |
|
| Q |
101 |
aaattttcttcatctactcaaatgaagctcataacatgtcgtgtatatcgaaaatacaataataattctgttgttggtgaaacaaaagctgggctaaaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2836605 |
aaattttcttcatctactcaaatgaagctcataacatgtcgtgtatatcgaaaatacaataataattctgttgttggtgaaacaaaagctgggctaaaaa |
2836506 |
T |
|
| Q |
201 |
ctgcacacacatggaattgtactttgtcaagaaaagac |
238 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
2836505 |
ctgcacacacatggaattgtactttgtcaagaaaagac |
2836468 |
T |
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