View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9189_low_20 (Length: 239)
Name: NF9189_low_20
Description: NF9189
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9189_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 49941750 - 49941527
Alignment:
| Q |
1 |
tacatatgaagttgaacattctgtgttgattttccttcctttgtcaaaagaggttaagctgtaaataagcattttcaaagatgatttaaatagctttcaa |
100 |
Q |
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| T |
49941750 |
tacatatgaagttaaacattctatgttgattttccttcctttgtcaaaagaggttaagccgtaaataagcattttcaaagatgatttaaatagctttcaa |
49941651 |
T |
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| Q |
101 |
ggtgatcaaatagtttggtttttccagaacatatcagcaagtttgtgttttcgtgttcaaagaatatttttacacaatgcatgtggctggtttggcagca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49941650 |
ggtgatcaaatagtttggtttttccagaacatatcagcaagtttgtgttttcgtgttcaaagaatatttttacacaatgcatgtggctggtttggcagca |
49941551 |
T |
|
| Q |
201 |
tccctctagaagcatcaggagatt |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
49941550 |
tccctctagaagcatcaggagatt |
49941527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 125 - 222
Target Start/End: Original strand, 1906838 - 1906935
Alignment:
| Q |
125 |
cagaacatatcagcaagtttgtgttttcgtgttcaaagaatatttttacacaatgcatgtggctggtttggcagcatccctctagaagcatcaggaga |
222 |
Q |
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|||||||||||| | ||||| |||||||| | ||||||||||||||||||||||||| |||| |||||||||| | |||||||||||||||||||| |
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| T |
1906838 |
cagaacatatcaacgagtttatgttttcgcggtcaaagaatatttttacacaatgcaaatggccggtttggcagtgttcctctagaagcatcaggaga |
1906935 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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