View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9189_low_21 (Length: 232)

Name: NF9189_low_21
Description: NF9189
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9189_low_21
NF9189_low_21
[»] chr3 (2 HSPs)
chr3 (140-216)||(3896332-3896408)
chr3 (20-81)||(3889669-3889730)
[»] scaffold0137 (1 HSPs)
scaffold0137 (140-216)||(3997-4073)


Alignment Details
Target: chr3 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 140 - 216
Target Start/End: Original strand, 3896332 - 3896408
Alignment:
Q  140 agaaaaaggtaatcaatgtacatgaggaatggaacaaacaaaatgcccaaaaacaccccaaccaaacctgaagaaag 216  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  3896332 agaaaaaggtaatcaatgtacatgaggaatggaacacacaaaatgcccaaaaacaccccaaccaaacctgaagaaag 3896408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 20 - 81
Target Start/End: Original strand, 3889669 - 3889730
Alignment:
Q  20 ttactctatagatactgtcgtgaaagaagattgcatgagacatggaaaatatacctaaaaaa 81  Q
    |||||||||||||||| ||| |||||||||||||| ||||||||||||||||||||||||||    
T  3889669 ttactctatagatactatcgggaaagaagattgcaggagacatggaaaatatacctaaaaaa 3889730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0137 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: scaffold0137
Description:

Target: scaffold0137; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 140 - 216
Target Start/End: Original strand, 3997 - 4073
Alignment:
Q  140 agaaaaaggtaatcaatgtacatgaggaatggaacaaacaaaatgcccaaaaacaccccaaccaaacctgaagaaag 216  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||    
T  3997 agaaaaaggtaatcaatgtacatgaggaatggaacacacaaaatgcccaaaaacaccccaaccaaacctaaagaaag 4073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University