View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9189_low_22 (Length: 203)
Name: NF9189_low_22
Description: NF9189
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9189_low_22 |
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Alignment Details
Target: chr8 (Bit Score: 74; Significance: 4e-34; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 13 - 109
Target Start/End: Original strand, 39371091 - 39371188
Alignment:
| Q |
13 |
ataattcttcccagcaacttctgaatt-ccttcggacagcctttaataatatttgaagacatcgtcgggtaaatgcgaattgttcaataactgattta |
109 |
Q |
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| T |
39371091 |
ataattcttccctgcaacttctgaatttccttcggagagcctttaataatatttgaggacatcatcgggtaaatgcgaattgttcaataactgattta |
39371188 |
T |
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Target: chr8; HSP #2
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 110 - 179
Target Start/End: Original strand, 39371548 - 39371617
Alignment:
| Q |
110 |
gtaagagtaattcttccttccagagataaatgggaagcctttaaggatgcagcttggatttaactttatc |
179 |
Q |
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| T |
39371548 |
gtaagaggaattcttccttccagagataaatgggaagcctttaaggatgcagcttgtatttaactttatc |
39371617 |
T |
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