View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9189_low_3 (Length: 822)
Name: NF9189_low_3
Description: NF9189
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9189_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 504; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 504; E-Value: 0
Query Start/End: Original strand, 1 - 533
Target Start/End: Complemental strand, 42938684 - 42938152
Alignment:
| Q |
1 |
ttttactctctttttattggtaaaaataatcataaatgaagttttattagcttagcttttcaaactcatgaaagtttgtaaaaaacctataatactagca |
100 |
Q |
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| T |
42938684 |
ttttactctctttttattggtaaaaataatcataaatgaagttttattagcttagcttttcaaactcatgaaagtttgtaaaaaacctataatactagca |
42938585 |
T |
|
| Q |
101 |
tgttattaaaagtaaaaaatgggtgacacattcacaaacaaatttcaaaatgagacgaattttgatgaaagctatattccattcttatcatggttggttg |
200 |
Q |
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| T |
42938584 |
tgttattaaaagtaaaaaatgggtgacacattcacaaacaaatttcaaaatgagacgaattttgatgaaagctatattccattcttatcatggttggttg |
42938485 |
T |
|
| Q |
201 |
gcaatatatacacactattaacattttgtaaattttaatataagtaattaacaaataatgtcatcatatcatatcatatactaatatattctttatttat |
300 |
Q |
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| T |
42938484 |
gcaatatatacacactattaacattttgtaaattttaatataagtaattaacaaataatgtcatcatatcatatcatatactaatatattctttatatat |
42938385 |
T |
|
| Q |
301 |
aaatagttagtttaaatcattgtcagatgtgctaccagtcgcctttcaaatggaaaaggatttggagcaatggcggannnnnnnaaaaaggccaaaaaat |
400 |
Q |
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| T |
42938384 |
aaatagttagtttaaatcattgtcagatgtgctaccagtcgcctttcaaatggaaaaggatttggagcaatggcggattttttttaaaaggccaaaaaat |
42938285 |
T |
|
| Q |
401 |
ataatatatttaagactaccaatcaaaatataaagaatgctgccctcgaaaaatatagttatcaactacacaagcagcaccaaaacaaccttgtctccga |
500 |
Q |
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| T |
42938284 |
ataatatatttaagactaccaatcaaaatataaagaatgctgccctcgaaaaatatagttatcaactacacaagcagcaccaaaacaaccttgtctccga |
42938185 |
T |
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| Q |
501 |
accacaaaagatagacaaatgatactaaacaac |
533 |
Q |
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| T |
42938184 |
accacaaaagatagacaaatgatactaaacaac |
42938152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 174; E-Value: 3e-93
Query Start/End: Original strand, 639 - 812
Target Start/End: Complemental strand, 42938047 - 42937874
Alignment:
| Q |
639 |
taagtttgttataaatattgtcacaaatggttgttaaattatcattattctaaaataaaaatgtaacaatcagaataaatcaaaaagtacttctaaacat |
738 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42938047 |
taagtttgttataaatattgtcacaaatggttgttaaattatcattattctaaaataaaaatgtaacaatcagaataaatcaaaaagtacttctaaacat |
42937948 |
T |
|
| Q |
739 |
atgagtgcttgaatattccattagtagaaatcatatggaagatatttaactttggactttatctaacaccaaac |
812 |
Q |
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| T |
42937947 |
atgagtgcttgaatattccattagtagaaatcatatggaagatatttaactttggactttatctaacaccaaac |
42937874 |
T |
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