View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9189_low_4 (Length: 709)
Name: NF9189_low_4
Description: NF9189
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9189_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 575; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 575; E-Value: 0
Query Start/End: Original strand, 17 - 697
Target Start/End: Complemental strand, 5738502 - 5737822
Alignment:
| Q |
17 |
cacttaacccgcaaggaggaaaaagagtacaagagggccaaaacgtggacacctcaccaccaaccaaactcgatnnnnnnncctcctaaaatctacgata |
116 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
5738502 |
cacttaacccgcaaggaggaaaaagagtacaagagggtcaaaacgtggacacctcaccaccaaccaaactcgataaaaaaacctcctaaaatctacgata |
5738403 |
T |
|
| Q |
117 |
aggttgtgacataacggttttttatgttgccgaaattacctcacaactatccatgcagagcgtcgatgtcgttagagggagatcagatggtttaagagnn |
216 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| || || ||||||||||||||||||||||||||| |
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| T |
5738402 |
aggttgtgacataacggttttttatattgccgaaattacctcacaactatgcatgcagagcgtcaatatctttagagggagatcagatggtttaagagtt |
5738303 |
T |
|
| Q |
217 |
nnnnnnnnnnnnngtgctttgaaaattgaattatccgatcttagtccaactaacgtccctaactattgaccgagtgaaatctaaatcacaattatggagt |
316 |
Q |
| |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
5738302 |
tttttaaaaaaaagtgttttgaaaattgaattatccgatcttagtccaactaacgtccctaactattgattgagtgaaatctaaatcacaattatggagt |
5738203 |
T |
|
| Q |
317 |
gatgtaaataacaagtatttacctcgtgggctcaatattaagttgaatgtgtctaagcatgaccggaataacaatatccggtgagcttaactgcggcaaa |
416 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
5738202 |
gatgtaaataacaagtatttacctcgtgggctcaatattaagttgaatgtgtctaagcaagaccggaataacaatatccggtgagcttaactgcggcaaa |
5738103 |
T |
|
| Q |
417 |
tgaccatctgtcgtcatgacctcaacaatggactgaccacccaagtgttggtgaagatactccgaaaccatcaccggaaccgccatatctttctcagctt |
516 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5738102 |
tgaccatctgtcgtcatgacctcaacaatggactgaccacccaagtgttggtgaagatactccgaaaccatcaccggaaccgccatatctttctcagctt |
5738003 |
T |
|
| Q |
517 |
gtataatatgacaaggcacagtaacaaggttcaaaatctgtctcatgtcactttgaaaaattgtccgtgacactattagagctatgtctggcctcatgtt |
616 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5738002 |
gtataatatgacaaggcacagtaacaaggttcaaaatctgtctcatgtcactttgaaaaattgtccgtgacactattagagctatgtctggcctcatgtt |
5737903 |
T |
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| Q |
617 |
gaacaatgttcgactaaactcctgtactgccactgaatccatgtccccacccacggccagtggagcaaatccataacacca |
697 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5737902 |
gaacaatgttcgactaaactcctgtactgccactgaatccatgtccccacccacggccagtggagcaaatccataacacca |
5737822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 77; Significance: 2e-35; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 361 - 697
Target Start/End: Original strand, 39711311 - 39711647
Alignment:
| Q |
361 |
gaatgtgtctaagcatgaccggaataacaatatccggtgagcttaactgcggcaaatgaccatctgtcgtcatgacctcaacaatggactgaccacccaa |
460 |
Q |
| |
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|||||||| | || || ||||||||||||| ||||| || ||||| || ||||||||||| ||||||| ||| ||||| || ||||||| | ||| | |
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| T |
39711311 |
gaatgtgtttgagtatcaccggaataacaacgtccggcgaacttaattgtggcaaatgaccctctgtcgacataacctccacgatggactcgctaccaac |
39711410 |
T |
|
| Q |
461 |
gtgttggtgaagatactccgaaaccatcaccggaaccgccatatctttctcagcttgtataatatgacaaggcacagtaacaaggttcaaaatctgtctc |
560 |
Q |
| |
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|||||||| |||||||||| |||| |||||||| || | ||| ||| | ||||||||| || || || ||||| || | | || || |||||| |
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| T |
39711411 |
atgttggtggagatactccgcgaccacgaccggaactgctagatccttcatactttgtataatgtggcatgggacagtgaccatgcataatatttgtctc |
39711510 |
T |
|
| Q |
561 |
atgtcactttgaaaaattgtccgtgacactattagagctatgtctggcctcatgttgaacaatgttcgactaaactcctgtactgccactgaatccatgt |
660 |
Q |
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|||||||||| ||||||||| || |||| |||| ||||||||||| |||||||||||||||||||| || || || |||||||| ||||| ||||||| |
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| T |
39711511 |
atgtcacttttaaaaattgtttgtaacacgcttagggctatgtctggtctcatgttgaacaatgttcggctgaattcttgtactgctactgactccatgt |
39711610 |
T |
|
| Q |
661 |
ccccacccacggccagtggagcaaatccataacacca |
697 |
Q |
| |
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|||| || || |||| ||||||||||||| ||||||| |
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| T |
39711611 |
cccctccaactgccattggagcaaatccagaacacca |
39711647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 48
Target Start/End: Complemental strand, 29299299 - 29299268
Alignment:
| Q |
17 |
cacttaacccgcaaggaggaaaaagagtacaa |
48 |
Q |
| |
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|||||||||||||||||||||||||||||||| |
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| T |
29299299 |
cacttaacccgcaaggaggaaaaagagtacaa |
29299268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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