View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9189_low_5 (Length: 416)

Name: NF9189_low_5
Description: NF9189
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9189_low_5
NF9189_low_5
[»] chr7 (29 HSPs)
chr7 (102-222)||(26565323-26565443)
chr7 (102-219)||(22687042-22687159)
chr7 (103-218)||(4574968-4575083)
chr7 (102-219)||(39182393-39182510)
chr7 (136-204)||(1977800-1977868)
chr7 (102-211)||(11325223-11325332)
chr7 (140-204)||(17741896-17741960)
chr7 (136-207)||(14055506-14055577)
chr7 (136-207)||(14365534-14365605)
chr7 (102-196)||(5058788-5058882)
chr7 (136-222)||(8343611-8343697)
chr7 (102-218)||(17811586-17811702)
chr7 (136-207)||(8329788-8329859)
chr7 (156-207)||(8329873-8329924)
chr7 (136-219)||(21846256-21846339)
chr7 (143-185)||(7307203-7307245)
chr7 (141-179)||(17809006-17809044)
chr7 (136-194)||(27221676-27221734)
chr7 (135-207)||(7730167-7730239)
chr7 (136-196)||(8304346-8304406)
chr7 (156-207)||(8346360-8346411)
chr7 (155-218)||(21157521-21157584)
chr7 (142-204)||(48621470-48621532)
chr7 (141-194)||(9685108-9685161)
chr7 (102-183)||(10285678-10285759)
chr7 (163-196)||(23618265-23618298)
chr7 (159-219)||(4247593-4247653)
chr7 (142-218)||(5715523-5715599)
chr7 (148-196)||(26340194-26340242)
[»] chr3 (30 HSPs)
chr3 (102-219)||(3449085-3449202)
chr3 (102-219)||(17064544-17064661)
chr3 (136-219)||(27676673-27676756)
chr3 (102-207)||(41671428-41671533)
chr3 (102-219)||(25870097-25870214)
chr3 (102-218)||(28746014-28746130)
chr3 (148-211)||(28136007-28136070)
chr3 (142-218)||(8592214-8592290)
chr3 (136-212)||(9152794-9152870)
chr3 (136-196)||(20766710-20766770)
chr3 (145-219)||(6136387-6136461)
chr3 (100-192)||(13006089-13006180)
chr3 (135-218)||(8560265-8560348)
chr3 (148-219)||(13286181-13286252)
chr3 (136-219)||(22137514-22137597)
chr3 (102-204)||(15515033-15515135)
chr3 (102-219)||(10872490-10872607)
chr3 (155-212)||(17796809-17796866)
chr3 (155-212)||(19105249-19105306)
chr3 (144-196)||(3041483-3041535)
chr3 (144-196)||(22971069-22971121)
chr3 (136-219)||(21963668-21963751)
chr3 (136-219)||(21986104-21986187)
chr3 (135-218)||(24620005-24620088)
chr3 (137-207)||(8155939-8156009)
chr3 (136-218)||(27090680-27090762)
chr3 (136-190)||(30727668-30727722)
chr3 (159-196)||(18014251-18014288)
chr3 (143-188)||(52519839-52519884)
chr3 (135-191)||(19348818-19348874)
[»] chr5 (15 HSPs)
chr5 (148-222)||(24648243-24648317)
chr5 (102-218)||(43005634-43005750)
chr5 (136-195)||(27339996-27340055)
chr5 (136-218)||(18843953-18844035)
chr5 (155-218)||(17624839-17624902)
chr5 (136-219)||(19377840-19377923)
chr5 (164-218)||(23172265-23172319)
chr5 (136-222)||(43235102-43235188)
chr5 (144-196)||(15051914-15051966)
chr5 (136-196)||(22645536-22645596)
chr5 (164-212)||(38158101-38158149)
chr5 (143-182)||(15446408-15446447)
chr5 (144-194)||(41427681-41427731)
chr5 (135-176)||(29270303-29270344)
chr5 (102-166)||(19979858-19979922)
[»] chr6 (22 HSPs)
chr6 (141-218)||(20432407-20432484)
chr6 (102-219)||(30912181-30912298)
chr6 (136-218)||(11327371-11327453)
chr6 (136-206)||(23506092-23506162)
chr6 (115-207)||(2912049-2912141)
chr6 (106-199)||(23898067-23898160)
chr6 (136-218)||(19748571-19748653)
chr6 (142-218)||(15527925-15528001)
chr6 (136-218)||(7223753-7223835)
chr6 (163-212)||(20981363-20981412)
chr6 (123-204)||(31407561-31407642)
chr6 (136-207)||(7621783-7621855)
chr6 (141-217)||(17543544-17543620)
chr6 (159-218)||(7918182-7918241)
chr6 (159-218)||(27890624-27890683)
chr6 (143-182)||(31108351-31108390)
chr6 (106-207)||(33592930-33593030)
chr6 (135-199)||(3573708-3573772)
chr6 (156-212)||(4841658-4841714)
chr6 (123-207)||(20399871-20399954)
chr6 (102-218)||(22498215-22498331)
chr6 (136-196)||(27614465-27614525)
[»] chr1 (22 HSPs)
chr1 (102-219)||(41032548-41032665)
chr1 (102-199)||(12513528-12513625)
chr1 (104-219)||(32881557-32881672)
chr1 (104-207)||(47786107-47786209)
chr1 (136-218)||(39845064-39845146)
chr1 (135-207)||(16434758-16434830)
chr1 (136-196)||(25146577-25146637)
chr1 (155-219)||(21242855-21242919)
chr1 (136-218)||(19009757-19009839)
chr1 (136-222)||(30619176-30619261)
chr1 (133-191)||(42179877-42179935)
chr1 (159-212)||(17055751-17055804)
chr1 (136-219)||(21846083-21846166)
chr1 (142-191)||(9321550-9321599)
chr1 (136-192)||(9954842-9954898)
chr1 (136-196)||(13100450-13100510)
chr1 (159-218)||(23528894-23528953)
chr1 (136-218)||(14074292-14074374)
chr1 (159-196)||(16125287-16125324)
chr1 (135-207)||(9128646-9128718)
chr1 (144-196)||(17197346-17197398)
chr1 (140-196)||(27502168-27502224)
[»] chr4 (22 HSPs)
chr4 (136-220)||(37240475-37240559)
chr4 (136-207)||(6346764-6346835)
chr4 (141-219)||(8010950-8011028)
chr4 (145-212)||(10394854-10394921)
chr4 (102-218)||(7452744-7452859)
chr4 (143-219)||(10143137-10143213)
chr4 (139-218)||(8743577-8743656)
chr4 (136-218)||(5361774-5361856)
chr4 (136-198)||(7045202-7045264)
chr4 (102-196)||(9770372-9770466)
chr4 (102-207)||(18459406-18459511)
chr4 (136-212)||(5943068-5943144)
chr4 (136-212)||(4157271-4157350)
chr4 (136-212)||(4157558-4157637)
chr4 (102-207)||(8889466-8889570)
chr4 (105-180)||(46664152-46664227)
chr4 (159-219)||(55476225-55476285)
chr4 (142-196)||(5375925-5375979)
chr4 (176-218)||(5884129-5884171)
chr4 (136-218)||(13023796-13023878)
chr4 (162-219)||(7045000-7045057)
chr4 (141-194)||(13551486-13551539)
[»] chr2 (20 HSPs)
chr2 (102-222)||(8428456-8428576)
chr2 (102-218)||(19245827-19245943)
chr2 (148-219)||(13502494-13502565)
chr2 (136-218)||(20063961-20064043)
chr2 (145-219)||(27407028-27407103)
chr2 (147-207)||(15627993-15628053)
chr2 (144-218)||(974576-974651)
chr2 (135-218)||(1405021-1405104)
chr2 (145-219)||(16767022-16767097)
chr2 (135-218)||(31237784-31237867)
chr2 (141-219)||(19262130-19262208)
chr2 (136-196)||(34167548-34167609)
chr2 (136-196)||(15588664-15588724)
chr2 (144-196)||(20034039-20034091)
chr2 (144-196)||(27523913-27523965)
chr2 (159-222)||(25538977-25539040)
chr2 (159-222)||(36430082-36430145)
chr2 (139-219)||(35565766-35565849)
chr2 (144-196)||(7302042-7302094)
chr2 (136-192)||(19492132-19492188)
[»] scaffold0603 (1 HSPs)
scaffold0603 (145-207)||(8777-8839)
[»] scaffold0042 (1 HSPs)
scaffold0042 (106-219)||(93483-93597)
[»] scaffold0534 (1 HSPs)
scaffold0534 (118-207)||(919-1008)
[»] chr8 (20 HSPs)
chr8 (118-207)||(17566347-17566436)
chr8 (102-219)||(17647234-17647351)
chr8 (136-207)||(6811068-6811139)
chr8 (102-207)||(29384087-29384192)
chr8 (136-219)||(24056379-24056462)
chr8 (136-222)||(15231855-15231941)
chr8 (104-188)||(11973942-11974026)
chr8 (136-195)||(2040380-2040439)
chr8 (136-219)||(22910012-22910095)
chr8 (102-192)||(11879864-11879954)
chr8 (102-192)||(11897280-11897370)
chr8 (136-218)||(24414096-24414178)
chr8 (136-218)||(45403267-45403349)
chr8 (136-218)||(26574926-26575008)
chr8 (162-219)||(15294906-15294963)
chr8 (162-219)||(15475275-15475332)
chr8 (154-196)||(7489175-7489217)
chr8 (157-219)||(15761188-15761250)
chr8 (159-196)||(27836131-27836168)
chr8 (136-196)||(19704266-19704326)
[»] scaffold0048 (1 HSPs)
scaffold0048 (102-218)||(61089-61205)
[»] scaffold0028 (1 HSPs)
scaffold0028 (102-219)||(145825-145942)
[»] scaffold0150 (1 HSPs)
scaffold0150 (148-219)||(33175-33246)
[»] scaffold0417 (1 HSPs)
scaffold0417 (141-206)||(7269-7334)
[»] scaffold0510 (1 HSPs)
scaffold0510 (139-199)||(16-76)
[»] scaffold0186 (1 HSPs)
scaffold0186 (136-218)||(8679-8761)
[»] scaffold0016 (1 HSPs)
scaffold0016 (136-218)||(56234-56316)
[»] scaffold2084 (1 HSPs)
scaffold2084 (135-196)||(88-149)
[»] scaffold0007 (1 HSPs)
scaffold0007 (143-184)||(220433-220474)
[»] scaffold0182 (1 HSPs)
scaffold0182 (144-212)||(24630-24698)
[»] scaffold0079 (1 HSPs)
scaffold0079 (144-196)||(14743-14795)


Alignment Details
Target: chr7 (Bit Score: 69; Significance: 8e-31; HSPs: 29)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 102 - 222
Target Start/End: Original strand, 26565323 - 26565443
Alignment:
Q  102 aaggttgtcaaagttgggatattgctttagattaaaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatt 201  Q
    |||||||||||| ||||||| || ||| || ||||||| ||| | ||||| |||||||||||||||||||||||||||||||| |||||||||||||| |    
T  26565323 aaggttgtcaaaattgggatctttcttcaggttaaaagggaagaacaaaaacgaaaatcgtaaaatcgtaatcaaaatcgaaggattttactcaactact 26565422  T
Q  202 tttgtaaaatccatataaaaa 222  Q
    |||||| |||| |||||||||    
T  26565423 tttgtagaatcaatataaaaa 26565443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 102 - 219
Target Start/End: Original strand, 22687042 - 22687159
Alignment:
Q  102 aaggttgtcaaagttgggatattgctttagattaaaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatt 201  Q
    |||||||| ||| | ||||| |||||| ||||  |||||||| ||||||||||| ||||||||||||  || |||||| ||||||||||||||||||| |    
T  22687042 aaggttgttaaaatcgggattttgcttcagatcgaaagagaagagcaaaatcgagaatcgtaaaatcacaaccaaaattgaagaattttactcaactact 22687141  T
Q  202 tttgtaaaatccatataa 219  Q
    |||||| |||| ||||||    
T  22687142 tttgtagaatcgatataa 22687159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 103 - 218
Target Start/End: Complemental strand, 4575083 - 4574968
Alignment:
Q  103 aggttgtcaaagttgggatattgctttagattaaaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactattt 202  Q
    ||||||||||| ||| ||| || ||| || || |||| |||||| |||||| ||||||||||||||| |||||||||| ||||||| |||||||||| ||    
T  4575083 aggttgtcaaaattgagatttttcttcaggttgaaagggaatagtaaaatcaaaaatcgtaaaatcgcaatcaaaatcaaagaattctactcaactactt 4574984  T
Q  203 ttgtaaaatccatata 218  Q
    ||||| |||| |||||    
T  4574983 ttgtagaatcgatata 4574968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 102 - 219
Target Start/End: Complemental strand, 39182510 - 39182393
Alignment:
Q  102 aaggttgtcaaagttgggatattgctttagattaaaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatt 201  Q
    |||||||||||| | | ||| |||||| || |  |||||||| || |||||||| ||||||||||||| || ||||||||||| |||||||||||||| |    
T  39182510 aaggttgtcaaaatcgtgattttgcttcagttccaaagagaagagaaaaatcgacaatcgtaaaatcgcaaccaaaatcgaaggattttactcaactact 39182411  T
Q  202 tttgtaaaatccatataa 219  Q
    |||||| |||| ||||||    
T  39182410 tttgtagaatcgatataa 39182393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 136 - 204
Target Start/End: Complemental strand, 1977868 - 1977800
Alignment:
Q  136 aaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactattttt 204  Q
    |||||||| || |||||||| ||||||||||||| |||||||||||||| ||||||||||| |||||||    
T  1977868 aaagagaagagaaaaatcgacaatcgtaaaatcgcaatcaaaatcgaaggattttactcaattattttt 1977800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 102 - 211
Target Start/End: Complemental strand, 11325332 - 11325223
Alignment:
Q  102 aaggttgtcaaagttgggatattgctttagattaaaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatt 201  Q
    |||||||||||| ||||||| |||||| |  | ||||||||| ||||||||||| ||||||||||||| || |||| |  |||  ||||||||||||| |    
T  11325332 aaggttgtcaaaattgggatcttgcttcacgtcaaaagagaagagcaaaatcgacaatcgtaaaatcgcaaccaaatttcaagggttttactcaactact 11325233  T
Q  202 tttgtaaaat 211  Q
    | ||||||||    
T  11325232 tctgtaaaat 11325223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 140 - 204
Target Start/End: Complemental strand, 17741960 - 17741896
Alignment:
Q  140 agaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactattttt 204  Q
    |||||||||||||||||||||||||||| | ||||||||| |||| |||||||| ||||| ||||    
T  17741960 agaatagcaaaatcgaaaatcgtaaaattgcaatcaaaattgaaggattttacttaactactttt 17741896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 136 - 207
Target Start/End: Complemental strand, 14055577 - 14055506
Alignment:
Q  136 aaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgta 207  Q
    |||||||  ||||||||||| ||| ||||||||| || ||||||||||| |||||||||||||| |||||||    
T  14055577 aaagagatgagcaaaatcgacaatggtaaaatcgcaaccaaaatcgaaggattttactcaactacttttgta 14055506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 136 - 207
Target Start/End: Complemental strand, 14365605 - 14365534
Alignment:
Q  136 aaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgta 207  Q
    |||||||  ||||||||||| ||| ||||||||| || ||||||||||| |||||||||||||| |||||||    
T  14365605 aaagagatgagcaaaatcgacaatggtaaaatcgcaaccaaaatcgaaggattttactcaactacttttgta 14365534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 102 - 196
Target Start/End: Complemental strand, 5058882 - 5058788
Alignment:
Q  102 aaggttgtcaaagttgggatattgctttagattaaaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaa 196  Q
    |||||||||||| | ||||  || ||| |||| ||||| |||||||||||||| || ||||||||| | |||||||||||||| |||||| ||||    
T  5058882 aaggttgtcaaaatcgggactttacttcagatcaaaagggaatagcaaaatcggaattcgtaaaattgcaatcaaaatcgaaggattttaatcaa 5058788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 136 - 222
Target Start/End: Original strand, 8343611 - 8343697
Alignment:
Q  136 aaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatataaaaa 222  Q
    |||||||| | |||||| || ||||||||||  | |||||||||||||| |||||||||||||| ||||||| |||  |||||||||    
T  8343611 aaagagaagaacaaaattgacaatcgtaaaaatgcaatcaaaatcgaagtattttactcaactacttttgtagaattgatataaaaa 8343697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 102 - 218
Target Start/End: Complemental strand, 17811702 - 17811586
Alignment:
Q  102 aaggttgtcaaagttgggatattgctttagattaaaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatt 201  Q
    |||||||||||| | ||||  || ||| || | ||||| ||||||||||||||  | ||||||||||| |||||||||||||  |||||||||||  | |    
T  17811702 aaggttgtcaaaatcgggactttacttcaggtcaaaagggaatagcaaaatcgggattcgtaaaatcgcaatcaaaatcgaaagattttactcaaggact 17811603  T
Q  202 tttgtaaaatccatata 218  Q
    |||||| |||| |||||    
T  17811602 tttgtagaatcgatata 17811586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 136 - 207
Target Start/End: Original strand, 8329788 - 8329859
Alignment:
Q  136 aaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgta 207  Q
    |||||||||| |||||| || |||| |||||| | ||||||||| |||| |||||||||||||| |||||||    
T  8329788 aaagagaataacaaaattgacaatcataaaattgcaatcaaaattgaaggattttactcaactacttttgta 8329859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 156 - 207
Target Start/End: Original strand, 8329873 - 8329924
Alignment:
Q  156 aaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgta 207  Q
    |||||||||||||| |||||||||| ||| |||||||||||||| |||||||    
T  8329873 aaatcgtaaaatcgcaatcaaaatcaaaggattttactcaactacttttgta 8329924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 136 - 219
Target Start/End: Original strand, 21846256 - 21846339
Alignment:
Q  136 aaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatataa 219  Q
    |||||| | ||||||||| |||||| |||||||| || ||||||||||| |||||| ||||||| |||| || |||| ||||||    
T  21846256 aaagaggagagcaaaatcaaaaatcctaaaatcgcaaccaaaatcgaaggattttaatcaactacttttatagaatcgatataa 21846339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 143 - 185
Target Start/End: Complemental strand, 7307245 - 7307203
Alignment:
Q  143 atagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaaga 185  Q
    |||||||||||| |||||||||||||| |||||||||||||||    
T  7307245 atagcaaaatcgcaaatcgtaaaatcgcaatcaaaatcgaaga 7307203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 141 - 179
Target Start/End: Original strand, 17809006 - 17809044
Alignment:
Q  141 gaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaat 179  Q
    ||||||||||||||||||||||||||||| |||||||||    
T  17809006 gaatagcaaaatcgaaaatcgtaaaatcgcaatcaaaat 17809044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 136 - 194
Target Start/End: Complemental strand, 27221734 - 27221676
Alignment:
Q  136 aaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactc 194  Q
    |||||| ||||||||||||  | ||||||||||| |||||||||||||| |||||||||    
T  27221734 aaagagtatagcaaaatcgggattcgtaaaatcgcaatcaaaatcgaaggattttactc 27221676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 135 - 207
Target Start/End: Original strand, 7730167 - 7730239
Alignment:
Q  135 aaaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgta 207  Q
    ||||||||| |||||||||   ||||||||||||| || ||||||||||   ||||||||||||| |||||||    
T  7730167 aaaagagaagagcaaaatcatcaatcgtaaaatcgcaaccaaaatcgaatggttttactcaactacttttgta 7730239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 196
Target Start/End: Complemental strand, 8304406 - 8304346
Alignment:
Q  136 aaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaa 196  Q
    ||||||| |||||||||||  | ||||||||||  |||||||||||||| |||||||||||    
T  8304406 aaagagagtagcaaaatcgcgactcgtaaaatcacaatcaaaatcgaaggattttactcaa 8304346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 156 - 207
Target Start/End: Original strand, 8346360 - 8346411
Alignment:
Q  156 aaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgta 207  Q
    ||||||||| |||| |||||||||| ||| |||||||||||||| |||||||    
T  8346360 aaatcgtaatatcgcaatcaaaatcaaaggattttactcaactacttttgta 8346411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 155 - 218
Target Start/End: Original strand, 21157521 - 21157584
Alignment:
Q  155 aaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatata 218  Q
    ||||||||||||||  ||||||||| |||| |||||| ||||||| ||||||| |||| |||||    
T  21157521 aaaatcgtaaaatctcaatcaaaattgaaggattttattcaactacttttgtagaatctatata 21157584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 142 - 204
Target Start/End: Original strand, 48621470 - 48621532
Alignment:
Q  142 aatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactattttt 204  Q
    |||| ||||||||||||||||||||||| |||  |||| |||  |||||||||||||| ||||    
T  48621470 aataacaaaatcgaaaatcgtaaaatcgcaattgaaattgaaagattttactcaactactttt 48621532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 194
Target Start/End: Original strand, 9685108 - 9685161
Alignment:
Q  141 gaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactc 194  Q
    ||||||||||||| | | ||||||||||| ||| |||||||||| |||||||||    
T  9685108 gaatagcaaaatcaagactcgtaaaatcgcaattaaaatcgaaggattttactc 9685161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 183
Target Start/End: Original strand, 10285678 - 10285759
Alignment:
Q  102 aaggttgtcaaagttgggatattgctttagattaaaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaa 183  Q
    |||||||||||| | ||||| || ||| || |  |||||||| || |||||| | ||||||||||||| |||||||||||||    
T  10285678 aaggttgtcaaaatcgggattttacttcaggtcgaaagagaagagaaaaatcaacaatcgtaaaatcgcaatcaaaatcgaa 10285759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 196
Target Start/End: Original strand, 23618265 - 23618298
Alignment:
Q  163 aaaatcgtaatcaaaatcgaagaattttactcaa 196  Q
    ||||||| ||||||||||||||||||||||||||    
T  23618265 aaaatcgcaatcaaaatcgaagaattttactcaa 23618298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 159 - 219
Target Start/End: Complemental strand, 4247653 - 4247593
Alignment:
Q  159 tcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatataa 219  Q
    ||||||||||| ||||||| || ||| |||||||||||  ||||||||| |||| ||||||    
T  4247653 tcgtaaaatcgcaatcaaattcaaaggattttactcaaggatttttgtagaatcgatataa 4247593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 142 - 218
Target Start/End: Complemental strand, 5715599 - 5715523
Alignment:
Q  142 aatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatata 218  Q
    ||||| |||||||  | ||||||||||| |||||||||||| | |||||||||||  | ||||||| |||| |||||    
T  5715599 aatagaaaaatcgggactcgtaaaatcgcaatcaaaatcgagggattttactcaaggacttttgtagaatcgatata 5715523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 148 - 196
Target Start/End: Original strand, 26340194 - 26340242
Alignment:
Q  148 aaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaa 196  Q
    ||||| ||||| ||||  |||| ||||||||||||||||||||||||||    
T  26340194 aaaatagaaaaacgtattatcgcaatcaaaatcgaagaattttactcaa 26340242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 62; Significance: 1e-26; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 102 - 219
Target Start/End: Original strand, 3449085 - 3449202
Alignment:
Q  102 aaggttgtcaaagttgggatattgctttagattaaaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatt 201  Q
    |||||||||||| ||||||| ||||||||| || |||||||| ||||||||||| ||||||||||||| || ||||||||||  |||||| ||||||| |    
T  3449085 aaggttgtcaaaattgggattttgctttaggttgaaagagaagagcaaaatcgacaatcgtaaaatcgcaaccaaaatcgaatgattttattcaactact 3449184  T
Q  202 tttgtaaaatccatataa 219  Q
    |||||| |||| ||||||    
T  3449185 tttgtagaatcgatataa 3449202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 102 - 219
Target Start/End: Complemental strand, 17064661 - 17064544
Alignment:
Q  102 aaggttgtcaaagttgggatattgctttagattaaaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatt 201  Q
    |||||||||||| ||||||| |||||| || |  ||||| || | ||||||||| ||||||||||||| |||||||||||||| |||||||||||||| |    
T  17064661 aaggttgtcaaaattgggattttgcttcaggtcgaaagaaaagatcaaaatcgacaatcgtaaaatcgcaatcaaaatcgaaggattttactcaactact 17064562  T
Q  202 tttgtaaaatccatataa 219  Q
    |||||| |||| ||||||    
T  17064561 tttgtagaatcaatataa 17064544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 136 - 219
Target Start/End: Complemental strand, 27676756 - 27676673
Alignment:
Q  136 aaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatataa 219  Q
    |||| ||| |||||||||||||||| |||||||| |||||||||||||  |||||||||||||| |||||||||||| ||||||    
T  27676756 aaagggaagagcaaaatcgaaaatcttaaaatcgcaatcaaaatcgaaagattttactcaactacttttgtaaaatcgatataa 27676673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 102 - 207
Target Start/End: Complemental strand, 41671533 - 41671428
Alignment:
Q  102 aaggttgtcaaagttgggatattgctttagattaaaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatt 201  Q
    |||||||||||| | ||||| |||||| || |  |||||||| ||||||||||| ||| ||||||||| || ||||||||||| |||||||||||||| |    
T  41671533 aaggttgtcaaaatcgggattttgcttcaggtcgaaagagaagagcaaaatcgataattgtaaaatcgcaaccaaaatcgaaggattttactcaactact 41671434  T
Q  202 tttgta 207  Q
    ||||||    
T  41671433 tttgta 41671428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 102 - 219
Target Start/End: Original strand, 25870097 - 25870214
Alignment:
Q  102 aaggttgtcaaagttgggatattgctttagattaaaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatt 201  Q
    |||||||||||| | | ||| ||||||||| |  |||||||| || |||||||| ||||||||||||| || ||||||| ||| ||||||||||||||      
T  25870097 aaggttgtcaaaatcgagattttgctttaggtcgaaagagaagagtaaaatcgacaatcgtaaaatcgcaaccaaaatcaaaggattttactcaactaag 25870196  T
Q  202 tttgtaaaatccatataa 219  Q
    |||||| |||| ||||||    
T  25870197 tttgtagaatcgatataa 25870214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 102 - 218
Target Start/End: Complemental strand, 28746130 - 28746014
Alignment:
Q  102 aaggttgtcaaagttgggatattgctttagattaaaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatt 201  Q
    |||||||||||| ||||||  || ||| || |  ||||| |||||||||||||  | ||||||||||| ||||||||||||||||||||||||||  | |    
T  28746130 aaggttgtcaaaattgggactttacttcaggtcgaaagaaaatagcaaaatcgggactcgtaaaatcgcaatcaaaatcgaagaattttactcaagaact 28746031  T
Q  202 tttgtaaaatccatata 218  Q
    |||||| |||| |||||    
T  28746030 tttgtagaatcgatata 28746014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 148 - 211
Target Start/End: Complemental strand, 28136070 - 28136007
Alignment:
Q  148 aaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaat 211  Q
    |||||||| |||||||||||||  ||||||||||||| |||||||||||||| |||||||||||    
T  28136070 aaaatcgagaatcgtaaaatcgctatcaaaatcgaaggattttactcaactacttttgtaaaat 28136007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 142 - 218
Target Start/End: Original strand, 8592214 - 8592290
Alignment:
Q  142 aatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatata 218  Q
    |||||||||||||| | ||||||||||| |||||||||||||| |||||||||||  | ||||||| |||| |||||    
T  8592214 aatagcaaaatcgagactcgtaaaatcgcaatcaaaatcgaaggattttactcaaggacttttgtagaatcgatata 8592290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 136 - 212
Target Start/End: Original strand, 9152794 - 9152870
Alignment:
Q  136 aaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatc 212  Q
    |||||||| || |||||| | |||||||||||||||| ||||||||||  |||| ||||||||||||||||| ||||    
T  9152794 aaagagaagagtaaaatcaacaatcgtaaaatcgtaaccaaaatcgaaagatttgactcaactatttttgtagaatc 9152870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 136 - 196
Target Start/End: Original strand, 20766710 - 20766770
Alignment:
Q  136 aaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaa 196  Q
    ||||||| |||||||||||| | ||||||||||| ||||||||||||| ||||||||||||    
T  20766710 aaagagagtagcaaaatcgagactcgtaaaatcgcaatcaaaatcgaaaaattttactcaa 20766770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 145 - 219
Target Start/End: Original strand, 6136387 - 6136461
Alignment:
Q  145 agcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatataa 219  Q
    ||||||||| ||||||||||||||| |||||||||| ||  |||||||||||||| |||| || |||| ||||||    
T  6136387 agcaaaatcaaaaatcgtaaaatcgcaatcaaaatcaaaagattttactcaactacttttatagaatcgatataa 6136461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 100 - 192
Target Start/End: Complemental strand, 13006180 - 13006089
Alignment:
Q  100 cgaaggttgtcaaagttgggatattgctttagattaaaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttac 192  Q
    ||||| |||||||| | ||||| ||||||||| |  |||| |||||||||||| |||||||||||||||| ||||||||| |||  |||||||    
T  13006180 cgaagattgtcaaaatcgggat-ttgctttaggtcgaaagggaatagcaaaattgaaaatcgtaaaatcgcaatcaaaattgaatgattttac 13006089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 135 - 218
Target Start/End: Original strand, 8560265 - 8560348
Alignment:
Q  135 aaaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatata 218  Q
    ||||| || |||||||||||| | |||| |||||| |||||||||||||| |||||||||||   |||||||| |||| |||||    
T  8560265 aaaagggagtagcaaaatcgagactcgtgaaatcgcaatcaaaatcgaaggattttactcaaggttttttgtagaatcaatata 8560348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 148 - 219
Target Start/End: Complemental strand, 13286252 - 13286181
Alignment:
Q  148 aaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatataa 219  Q
    |||||| ||| ||||||||||| |||||||||| ||  |||||||||||||| ||||||| |||| ||||||    
T  13286252 aaaatcaaaactcgtaaaatcgcaatcaaaatcaaaagattttactcaactacttttgtagaatcgatataa 13286181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 136 - 219
Target Start/End: Complemental strand, 22137597 - 22137514
Alignment:
Q  136 aaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatataa 219  Q
    |||||||| |||||||||   ||| ||||||||  || ||||||| |||||||||||||||||| ||||||| |||| ||||||    
T  22137597 aaagagaagagcaaaatcagcaatagtaaaatcacaaccaaaatcaaagaattttactcaactacttttgtagaatcgatataa 22137514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 102 - 204
Target Start/End: Original strand, 15515033 - 15515135
Alignment:
Q  102 aaggttgtcaaagttgggatattgctttagattaaaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatt 201  Q
    |||||||| ||| | ||||| |||||| || || |||||||  | ||||||||| ||| |||||||| |||  |||||||||| |||||||||||||| |    
T  15515033 aaggttgttaaaatcgggattttgcttcaggttgaaagagatgaccaaaatcgacaattgtaaaatcttaactaaaatcgaagtattttactcaactact 15515132  T
Q  202 ttt 204  Q
    |||    
T  15515133 ttt 15515135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 102 - 219
Target Start/End: Original strand, 10872490 - 10872607
Alignment:
Q  102 aaggttgtcaaagttgggatattgctttagattaaaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatt 201  Q
    |||||||||||| |  |||| || ||| || | ||||| ||| || |||||| |||||| |||||||| ||||||||| |||| |||||||| ||||| |    
T  10872490 aaggttgtcaaaatcaggattttacttcaggtcaaaagggaagagaaaaatcaaaaatcataaaatcgcaatcaaaattgaaggattttactaaactact 10872589  T
Q  202 tttgtaaaatccatataa 219  Q
    |||| | |||| ||||||    
T  10872590 tttgaagaatcgatataa 10872607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 155 - 212
Target Start/End: Complemental strand, 17796866 - 17796809
Alignment:
Q  155 aaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatc 212  Q
    ||||||||||||| | ||| |||||||||| |||||||||||||| ||||||| ||||    
T  17796866 aaaatcgtaaaattgcaattaaaatcgaagcattttactcaactacttttgtagaatc 17796809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 155 - 212
Target Start/End: Complemental strand, 19105306 - 19105249
Alignment:
Q  155 aaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatc 212  Q
    ||||||||||||| | ||| |||||||||| |||||||||||||| ||||||| ||||    
T  19105306 aaaatcgtaaaattgcaattaaaatcgaagcattttactcaactacttttgtagaatc 19105249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 144 - 196
Target Start/End: Complemental strand, 3041535 - 3041483
Alignment:
Q  144 tagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaa 196  Q
    |||||||||||  | ||||||||||| |||||||||||||| |||||||||||    
T  3041535 tagcaaaatcgggactcgtaaaatcgcaatcaaaatcgaaggattttactcaa 3041483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 144 - 196
Target Start/End: Complemental strand, 22971121 - 22971069
Alignment:
Q  144 tagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaa 196  Q
    |||||||||||  | ||||||||||| |||||||||||||| |||||||||||    
T  22971121 tagcaaaatcgggactcgtaaaatcgcaatcaaaatcgaaggattttactcaa 22971069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 136 - 219
Target Start/End: Complemental strand, 21963751 - 21963668
Alignment:
Q  136 aaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatataa 219  Q
    |||||||| ||||||||||| ||| ||||||||  || ||||||  ||||||||||||||| || |||| || |||| ||||||    
T  21963751 aaagagaagagcaaaatcgacaatagtaaaatcacaaccaaaattaaagaattttactcaattacttttatagaatcgatataa 21963668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 136 - 219
Target Start/End: Complemental strand, 21986187 - 21986104
Alignment:
Q  136 aaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatataa 219  Q
    |||||||| ||||||||||| ||| ||||||||  || ||||||  ||||||||||||||| || |||| || |||| ||||||    
T  21986187 aaagagaagagcaaaatcgacaatagtaaaatcacaaccaaaattaaagaattttactcaattacttttatagaatcgatataa 21986104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 135 - 218
Target Start/End: Original strand, 24620005 - 24620088
Alignment:
Q  135 aaaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatata 218  Q
    ||||| |||||||||||| |  | | ||||||||| |||||||||||||| |||||||||||  | ||||||| |||| |||||    
T  24620005 aaaagggaatagcaaaattgggacttgtaaaatcgcaatcaaaatcgaaggattttactcaaagacttttgtagaatcgatata 24620088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 137 - 207
Target Start/End: Original strand, 8155939 - 8156009
Alignment:
Q  137 aagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgta 207  Q
    ||||||| |||||||| || |||| |||||||| ||  || ||||||| |||||||||||||| |||||||    
T  8155939 aagagaagagcaaaatggacaatcataaaatcgcaactaagatcgaaggattttactcaactacttttgta 8156009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 136 - 218
Target Start/End: Complemental strand, 27090762 - 27090680
Alignment:
Q  136 aaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatata 218  Q
    |||| |||||| ||||| | ||||||||| |||| ||| |||||||||| |||||||||||  | ||||||| |||| |||||    
T  27090762 aaagggaatagaaaaattgcaaatcgtaagatcgcaataaaaatcgaaggattttactcaaggaattttgtataatcgatata 27090680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 136 - 190
Target Start/End: Original strand, 30727668 - 30727722
Alignment:
Q  136 aaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaatttt 190  Q
    |||| ||||||||||||||| | || |||||||| |||||||||||| |||||||    
T  30727668 aaagggaatagcaaaatcgagactcctaaaatcgcaatcaaaatcgatgaatttt 30727722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 196
Target Start/End: Complemental strand, 18014288 - 18014251
Alignment:
Q  159 tcgtaaaatcgtaatcaaaatcgaagaattttactcaa 196  Q
    ||||||||||| |||||||||||||| |||||||||||    
T  18014288 tcgtaaaatcgcaatcaaaatcgaaggattttactcaa 18014251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 188
Target Start/End: Complemental strand, 52519884 - 52519839
Alignment:
Q  143 atagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaatt 188  Q
    ||||||||||||||||| ||||||||| |||| |||| ||||||||    
T  52519884 atagcaaaatcgaaaattgtaaaatcgcaatcgaaatagaagaatt 52519839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 135 - 191
Target Start/End: Complemental strand, 19348874 - 19348818
Alignment:
Q  135 aaaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaatttta 191  Q
    ||||| || |||||||||||| | ||||||||||| ||||||||| |||| ||||||    
T  19348874 aaaagggagtagcaaaatcgagactcgtaaaatcgcaatcaaaatggaaggatttta 19348818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 148 - 222
Target Start/End: Complemental strand, 24648317 - 24648243
Alignment:
Q  148 aaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatataaaaa 222  Q
    ||||||||||||||||||||||||||||||||| ||| |||||||||||||| ||||||| |||| |||||||||    
T  24648317 aaaatcgaaaatcgtaaaatcgtaatcaaaatcaaaggattttactcaactacttttgtagaatcaatataaaaa 24648243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 102 - 218
Target Start/End: Original strand, 43005634 - 43005750
Alignment:
Q  102 aaggttgtcaaagttgggatattgctttagattaaaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatt 201  Q
    |||||||||||| | ||||| |||||||||||  ||||  ||||| ||| |||||||| ||||||||| ||||||||| |||  |||||||||||||  |    
T  43005634 aaggttgtcaaaatcgggattttgctttagatcgaaaggaaatagaaaattcgaaaattgtaaaatcgcaatcaaaattgaaagattttactcaacttct 43005733  T
Q  202 tttgtaaaatccatata 218  Q
    |||||| |||| |||||    
T  43005734 tttgtagaatcgatata 43005750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 136 - 195
Target Start/End: Original strand, 27339996 - 27340055
Alignment:
Q  136 aaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactca 195  Q
    |||| |||||||||||||||||||||| |||||| |||||||||||||| ||||||||||    
T  27339996 aaagggaatagcaaaatcgaaaatcgtgaaatcgcaatcaaaatcgaaggattttactca 27340055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 136 - 218
Target Start/End: Complemental strand, 18844035 - 18843953
Alignment:
Q  136 aaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatata 218  Q
    |||| ||||||||||||||  | ||||||||||| ||||||||||| || |||||||||||  | ||||||| ||||||||||    
T  18844035 aaagggaatagcaaaatcgggactcgtaaaatcgcaatcaaaatcggagtattttactcaaggacttttgtagaatccatata 18843953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 155 - 218
Target Start/End: Complemental strand, 17624902 - 17624839
Alignment:
Q  155 aaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatata 218  Q
    ||||||||||||||| |||||||||| ||  |||||||||||||| |||||| ||||| |||||    
T  17624902 aaaatcgtaaaatcgcaatcaaaatcaaaagattttactcaactacttttgttaaatcaatata 17624839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 136 - 219
Target Start/End: Complemental strand, 19377923 - 19377840
Alignment:
Q  136 aaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatataa 219  Q
    |||| ||||||||||||||| ||||||||| |   |||||||||||||| |||||||||||  | ||||||| |||| ||||||    
T  19377923 aaagggaatagcaaaatcgagaatcgtaaatttacaatcaaaatcgaaggattttactcaaggacttttgtagaatcgatataa 19377840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 164 - 218
Target Start/End: Original strand, 23172265 - 23172319
Alignment:
Q  164 aaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatata 218  Q
    |||||||||||||||||||||||||||||||||  | ||||||| |||| |||||    
T  23172265 aaatcgtaatcaaaatcgaagaattttactcaaagacttttgtagaatcgatata 23172319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 136 - 222
Target Start/End: Complemental strand, 43235188 - 43235102
Alignment:
Q  136 aaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatataaaaa 222  Q
    |||| |||||||||||||   | || |||||||| |||||||||||||| |||||||||||  | ||||||| |||| |||||||||    
T  43235188 aaagggaatagcaaaatcagtactcataaaatcgcaatcaaaatcgaaggattttactcaagaacttttgtagaatcgatataaaaa 43235102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 144 - 196
Target Start/End: Original strand, 15051914 - 15051966
Alignment:
Q  144 tagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaa 196  Q
    |||||||||||  | ||||||||||| |||||||||||||| |||||||||||    
T  15051914 tagcaaaatcgggactcgtaaaatcgcaatcaaaatcgaaggattttactcaa 15051966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 196
Target Start/End: Original strand, 22645536 - 22645596
Alignment:
Q  136 aaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaa 196  Q
    |||| |||||||||||| || | ||||||||| | |||||||||||||| |||||||||||    
T  22645536 aaagggaatagcaaaattgagactcgtaaaattgcaatcaaaatcgaaggattttactcaa 22645596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 212
Target Start/End: Original strand, 38158101 - 38158149
Alignment:
Q  164 aaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatc 212  Q
    |||||| || ||||||||||| |||||||||||||||||||||| ||||    
T  38158101 aaatcgcaaccaaaatcgaaggattttactcaactatttttgtagaatc 38158149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 143 - 182
Target Start/End: Complemental strand, 15446447 - 15446408
Alignment:
Q  143 atagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcga 182  Q
    ||||||||||||||| ||||||||||| ||||||||||||    
T  15446447 atagcaaaatcgaaactcgtaaaatcgcaatcaaaatcga 15446408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 144 - 194
Target Start/End: Complemental strand, 41427731 - 41427681
Alignment:
Q  144 tagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactc 194  Q
    |||||||||||  | ||||||||||| |||||||||||||| |||||||||    
T  41427731 tagcaaaatcgggactcgtaaaatcgcaatcaaaatcgaaggattttactc 41427681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 176
Target Start/End: Complemental strand, 29270344 - 29270303
Alignment:
Q  135 aaaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaa 176  Q
    ||||||||||| ||||||||||||| |||||||| |||||||    
T  29270344 aaaagagaatatcaaaatcgaaaatagtaaaatcataatcaa 29270303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 102 - 166
Target Start/End: Complemental strand, 19979922 - 19979858
Alignment:
Q  102 aaggttgtcaaagttgggatattgctttagattaaaagagaatagcaaaatcgaaaatcgtaaaa 166  Q
    ||||| |||||| | ||||| |||||| || | ||||||||| ||||||||||| ||||||||||    
T  19979922 aaggtggtcaaaatcgggattttgcttcaggtcaaaagagaagagcaaaatcgacaatcgtaaaa 19979858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 7e-22; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 141 - 218
Target Start/End: Original strand, 20432407 - 20432484
Alignment:
Q  141 gaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatata 218  Q
    ||||||||||||||||||||||||||||| ||||||||| ||||||||||||| ||||| ||||||| |||| |||||    
T  20432407 gaatagcaaaatcgaaaatcgtaaaatcgcaatcaaaattgaagaattttacttaactagttttgtagaatcgatata 20432484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 102 - 219
Target Start/End: Original strand, 30912181 - 30912298
Alignment:
Q  102 aaggttgtcaaagttgggatattgctttagattaaaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatt 201  Q
    |||||||||||| | || || |||||| || || |||||||||||||||||||| ||||||||||||  || |||||| |||| |||||| ||||||| |    
T  30912181 aaggttgtcaaaatcggaattttgcttcaggttgaaagagaatagcaaaatcgataatcgtaaaatctcaaccaaaattgaaggattttattcaactact 30912280  T
Q  202 tttgtaaaatccatataa 219  Q
    ||||||||||| ||||||    
T  30912281 tttgtaaaatcgatataa 30912298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 136 - 218
Target Start/End: Original strand, 11327371 - 11327453
Alignment:
Q  136 aaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatata 218  Q
    |||| ||||||||||||||| | ||||||||||| ||||||||||||||||||||||||||  | ||||||| |||| |||||    
T  11327371 aaagggaatagcaaaatcgagactcgtaaaatcgcaatcaaaatcgaagaattttactcaaggacttttgtagaatcgatata 11327453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 136 - 206
Target Start/End: Complemental strand, 23506162 - 23506092
Alignment:
Q  136 aaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgt 206  Q
    |||||||||||||||||||||||| ||||||||  ||| |||||||||| |||||| ||||||||||||||    
T  23506162 aaagagaatagcaaaatcgaaaattgtaaaatcacaattaaaatcgaaggattttagtcaactatttttgt 23506092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 115 - 207
Target Start/End: Original strand, 2912049 - 2912141
Alignment:
Q  115 ttgggatattgctttagattaaaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgta 207  Q
    ||||||| |||||| || || |||||||| ||| ||||||| |||||||||||| ||||| |||| |||| |||||||||||||| |||||||    
T  2912049 ttgggattttgcttcaggttgaaagagaagagcgaaatcgataatcgtaaaatcataatcgaaattgaaggattttactcaactacttttgta 2912141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 106 - 199
Target Start/End: Complemental strand, 23898160 - 23898067
Alignment:
Q  106 ttgtcaaagttgggatattgctttagattaaaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaacta 199  Q
    |||||||| | ||||| |||||| || |  || ||||| ||||||||||| ||||||||||||| || ||||||||||| ||||||||||||||    
T  23898160 ttgtcaaaatcgggattttgcttcaggtcgaatgagaagagcaaaatcgacaatcgtaaaatcgaaaccaaaatcgaaggattttactcaacta 23898067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 136 - 218
Target Start/End: Complemental strand, 19748653 - 19748571
Alignment:
Q  136 aaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatata 218  Q
    |||| ||||||||||||||  | ||||||||||| |||||||||||||| |||||||||||  | ||||||| |||| |||||    
T  19748653 aaagggaatagcaaaatcgggattcgtaaaatcgcaatcaaaatcgaaggattttactcaaggacttttgtagaatcgatata 19748571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 142 - 218
Target Start/End: Original strand, 15527925 - 15528001
Alignment:
Q  142 aatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatata 218  Q
    ||||||||||||| || ||| ||||||| |||||||||||||| |||||||||||  | ||||||| |||| |||||    
T  15527925 aatagcaaaatcggaactcggaaaatcgcaatcaaaatcgaaggattttactcaaggacttttgtagaatcgatata 15528001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 136 - 218
Target Start/End: Complemental strand, 7223835 - 7223753
Alignment:
Q  136 aaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatata 218  Q
    |||| ||||||||||||||  | ||||||||| | |||||||||||||| |||||||||||  | ||||||| |||| |||||    
T  7223835 aaagggaatagcaaaatcgggactcgtaaaattgcaatcaaaatcgaaggattttactcaaggacttttgtagaatcgatata 7223753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 163 - 212
Target Start/End: Complemental strand, 20981412 - 20981363
Alignment:
Q  163 aaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatc 212  Q
    |||||||||||||||||| |||||||||||||||||  ||||||| ||||    
T  20981412 aaaatcgtaatcaaaatcaaagaattttactcaactgcttttgtagaatc 20981363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 123 - 204
Target Start/End: Complemental strand, 31407642 - 31407561
Alignment:
Q  123 ttgctttagattaaaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactattttt 204  Q
    ||||||||| || |||| ||||| |||||||||||||  |||||||  |||||||||| ||  |||||||||||||| ||||    
T  31407642 ttgctttaggttgaaagggaataacaaaatcgaaaattataaaatcacaatcaaaatcaaaagattttactcaactactttt 31407561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 207
Target Start/End: Original strand, 7621783 - 7621855
Alignment:
Q  136 aaagagaatagcaaaatcgaaaa-tcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgta 207  Q
    |||| ||||| |||||||||||| || |||||  || |||||||| ||||||||||||||||||| |||||||    
T  7621783 aaagggaataacaaaatcgaaaaatcataaaactgttatcaaaattgaagaattttactcaactacttttgta 7621855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 141 - 217
Target Start/End: Original strand, 17543544 - 17543620
Alignment:
Q  141 gaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatat 217  Q
    ||||||||||||||  | || |||||||| |||||||||||||| |||||||||||  | ||||||| |||| ||||    
T  17543544 gaatagcaaaatcgggactcataaaatcgaaatcaaaatcgaaggattttactcaaggacttttgtagaatcgatat 17543620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 159 - 218
Target Start/End: Original strand, 7918182 - 7918241
Alignment:
Q  159 tcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatata 218  Q
    ||||||||| | ||||||||||||||||||||||||||  | ||||||| |||| |||||    
T  7918182 tcgtaaaattgcaatcaaaatcgaagaattttactcaaggacttttgtagaatcaatata 7918241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 159 - 218
Target Start/End: Complemental strand, 27890683 - 27890624
Alignment:
Q  159 tcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatata 218  Q
    ||||||||||||||||||||| |||| |||||||||||  | ||||||| |||| |||||    
T  27890683 tcgtaaaatcgtaatcaaaattgaaggattttactcaaggacttttgtagaatcgatata 27890624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 143 - 182
Target Start/End: Complemental strand, 31108390 - 31108351
Alignment:
Q  143 atagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcga 182  Q
    |||||||||||| |||||||||||||| ||||||||||||    
T  31108390 atagcaaaatcgtaaatcgtaaaatcgcaatcaaaatcga 31108351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 207
Target Start/End: Original strand, 33592930 - 33593030
Alignment:
Q  106 ttgtcaaagttgggatattgctttagattaaaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttg 205  Q
    |||||||| | ||||| |||||| | ||  |||| ||||| |||||| |||||||||||||| | |||| ||||||||  | |||||||||||| |||||    
T  33592930 ttgtcaaaatcgggattttgcttcatatcgaaagggaataacaaaattgaaaatcgtaaaattgcaatcgaaatcgaatga-tttactcaactacttttg 33593028  T
Q  206 ta 207  Q
    ||    
T  33593029 ta 33593030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 135 - 199
Target Start/End: Original strand, 3573708 - 3573772
Alignment:
Q  135 aaaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaacta 199  Q
    ||||| |||||||||||||   | ||||||||||| ||||||||||| || | ||||||||||||    
T  3573708 aaaagggaatagcaaaatcaggactcgtaaaatcgcaatcaaaatcgtaggaatttactcaacta 3573772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 156 - 212
Target Start/End: Original strand, 4841658 - 4841714
Alignment:
Q  156 aaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatc 212  Q
    |||||| ||||||  |||||||||| ||| |||||||||||||| ||||||| ||||    
T  4841658 aaatcgaaaaatcacaatcaaaatcaaaggattttactcaactacttttgtagaatc 4841714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 123 - 207
Target Start/End: Original strand, 20399871 - 20399954
Alignment:
Q  123 ttgctttagattaaaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgta 207  Q
    |||||| ||||| |||| || ||| |||| ||||||| ||||||||  ||| ||||| ||||||||||||||||||  |||||||    
T  20399871 ttgcttcagattgaaag-gattagaaaaaacgaaaattgtaaaatcacaataaaaattgaagaattttactcaacttgttttgta 20399954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 102 - 218
Target Start/End: Original strand, 22498215 - 22498331
Alignment:
Q  102 aaggttgtcaaagttgggatattgctttagattaaaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatt 201  Q
    |||||||||||| ||||||  || ||| || |  |||| |||||||||||| |  | ||||||||||| ||||||||| |||  |||||||||||  | |    
T  22498215 aaggttgtcaaaattgggactttacttcaggtcgaaagggaatagcaaaattgggactcgtaaaatcgcaatcaaaattgaacgattttactcaaagact 22498314  T
Q  202 tttgtaaaatccatata 218  Q
    |||||| |||| |||||    
T  22498315 tttgtagaatcgatata 22498331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 136 - 196
Target Start/End: Original strand, 27614465 - 27614525
Alignment:
Q  136 aaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaa 196  Q
    |||| |||||| |||||||  | ||||||||||  |||||||||||||| |||||||||||    
T  27614465 aaagggaatagtaaaatcgggactcgtaaaatcacaatcaaaatcgaaggattttactcaa 27614525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 7e-22; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 102 - 219
Target Start/End: Original strand, 41032548 - 41032665
Alignment:
Q  102 aaggttgtcaaagttgggatattgctttagattaaaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatt 201  Q
    |||||||||||| | ||||| || ||| || || |||||||| |||||||| || ||||||||||||| ||  ||||||||||||||||||||||||| |    
T  41032548 aaggttgtcaaaatagggattttacttcaggttgaaagagaagagcaaaattgataatcgtaaaatcgcaactaaaatcgaagaattttactcaactagt 41032647  T
Q  202 tttgtaaaatccatataa 219  Q
    |||||| |||| ||||||    
T  41032648 tttgtagaatcgatataa 41032665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 102 - 199
Target Start/End: Complemental strand, 12513625 - 12513528
Alignment:
Q  102 aaggttgtcaaagttgggatattgctttagattaaaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaacta 199  Q
    |||||||||||| ||||||| |||||| || | ||||||||| ||||||||||| ||| ||||||||| || ||||||| ||| ||||||||||||||    
T  12513625 aaggttgtcaaaattgggattttgcttcaggtcaaaagagaagagcaaaatcgacaattgtaaaatcgcaaccaaaatcaaaggattttactcaacta 12513528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 104 - 219
Target Start/End: Complemental strand, 32881672 - 32881557
Alignment:
Q  104 ggttgtcaaagttgggatattgctttagattaaaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttt 203  Q
    |||| ||||| | ||||| |||||| ||||| |||||||| ||||||||||| ||||||||||||| ||   ||||||||| ||||||||||||||  ||    
T  32881672 ggttttcaaaatcgggattttgcttcagattgaaagagaaaagcaaaatcgacaatcgtaaaatcgcaactgaaatcgaaggattttactcaactacgtt 32881573  T
Q  204 tgtaaaatccatataa 219  Q
    |||| |||| ||||||    
T  32881572 tgtagaatcgatataa 32881557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 104 - 207
Target Start/End: Complemental strand, 47786209 - 47786107
Alignment:
Q  104 ggttgtcaaagttgggatattgctttagattaaaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttt 203  Q
    |||||||||| | ||||| || |||||| || |||||||| ||||||||||| ||||||||||||  || ||||||||||| |||||||||||||| |||    
T  47786209 ggttgtcaaaatcgggatttt-ctttaggttgaaagagaagagcaaaatcgacaatcgtaaaatcacaaccaaaatcgaaggattttactcaactacttt 47786111  T
Q  204 tgta 207  Q
    ||||    
T  47786110 tgta 47786107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 136 - 218
Target Start/End: Original strand, 39845064 - 39845146
Alignment:
Q  136 aaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatata 218  Q
    |||||||||||||||||||||||| ||||||| | ||| ||||| |||  |||||||||||||||||||||||| || |||||    
T  39845064 aaagagaatagcaaaatcgaaaattgtaaaattgcaattaaaattgaatgattttactcaactatttttgtaaagtcgatata 39845146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 135 - 207
Target Start/End: Complemental strand, 16434830 - 16434758
Alignment:
Q  135 aaaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgta 207  Q
    ||||| ||||||||||||||||||||||||||| | |||||||||||||| ||||||||| || | |||||||    
T  16434830 aaaagggaatagcaaaatcgaaaatcgtaaaattgcaatcaaaatcgaaggattttactcgacaacttttgta 16434758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 136 - 196
Target Start/End: Original strand, 25146577 - 25146637
Alignment:
Q  136 aaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaa 196  Q
    |||| |||||||||||||| |||||||||||||| |||||||||||||| |||||||||||    
T  25146577 aaagggaatagcaaaatcggaaatcgtaaaatcgcaatcaaaatcgaaggattttactcaa 25146637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 155 - 219
Target Start/End: Original strand, 21242855 - 21242919
Alignment:
Q  155 aaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatataa 219  Q
    ||||||||||||||||||| | ||| ||||||||||||||||||| ||||||| |||| ||||||    
T  21242855 aaaatcgtaaaatcgtaattacaattgaagaattttactcaactaattttgtagaatcgatataa 21242919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 136 - 218
Target Start/End: Original strand, 19009757 - 19009839
Alignment:
Q  136 aaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatata 218  Q
    |||| ||||||||||||||  | ||||||||||| |||||||||| ||| |||||||||||  | |||||||||||| |||||    
T  19009757 aaagggaatagcaaaatcgggactcgtaaaatcgcaatcaaaatcaaaggattttactcaagaacttttgtaaaatcgatata 19009839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 136 - 222
Target Start/End: Complemental strand, 30619261 - 30619176
Alignment:
Q  136 aaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatataaaaa 222  Q
    |||||||| ||||||||||| ||||||||| ||| ||  |||||||||| |||||||||||||| ||||||| |||| |||| ||||    
T  30619261 aaagagaagagcaaaatcgacaatcgtaaa-tcgcaacaaaaatcgaaggattttactcaactacttttgtagaatcgatatgaaaa 30619176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 133 - 191
Target Start/End: Original strand, 42179877 - 42179935
Alignment:
Q  133 ttaaaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaatttta 191  Q
    ||||||| |||||||| |||||||| ||||||||||| |||||||||||||| ||||||    
T  42179877 ttaaaagggaatagcataatcgaaactcgtaaaatcgcaatcaaaatcgaaggatttta 42179935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 159 - 212
Target Start/End: Original strand, 17055751 - 17055804
Alignment:
Q  159 tcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatc 212  Q
    ||||||||||| |||||||||||||| |||||||||||||| ||||||| ||||    
T  17055751 tcgtaaaatcgcaatcaaaatcgaaggattttactcaactacttttgtagaatc 17055804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 136 - 219
Target Start/End: Original strand, 21846083 - 21846166
Alignment:
Q  136 aaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatataa 219  Q
    |||| ||||||||||||||  | || |||||||| |||||||||||||| |||||||||||  | ||||||| |||| ||||||    
T  21846083 aaagggaatagcaaaatcgggactcttaaaatcgcaatcaaaatcgaaggattttactcaaggacttttgtagaatcgatataa 21846166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 142 - 191
Target Start/End: Original strand, 9321550 - 9321599
Alignment:
Q  142 aatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaatttta 191  Q
    ||||||||||||| || ||||||||||| |||||||||||||| ||||||    
T  9321550 aatagcaaaatcggaactcgtaaaatcgcaatcaaaatcgaaggatttta 9321599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 192
Target Start/End: Original strand, 9954842 - 9954898
Alignment:
Q  136 aaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttac 192  Q
    |||| ||||||||||||||  | ||||||||||| |||||||||||||| |||||||    
T  9954842 aaagggaatagcaaaatcgggactcgtaaaatcgcaatcaaaatcgaaggattttac 9954898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 196
Target Start/End: Complemental strand, 13100510 - 13100450
Alignment:
Q  136 aaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaa 196  Q
    |||| |||| ||||||||| || ||||||||||| |||||||||| ||| |||||||||||    
T  13100510 aaagggaatggcaaaatcggaactcgtaaaatcgcaatcaaaatcaaaggattttactcaa 13100450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 159 - 218
Target Start/End: Complemental strand, 23528953 - 23528894
Alignment:
Q  159 tcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatata 218  Q
    ||||||||||| |||||||||||||| |||||||||||  | ||||||| |||| |||||    
T  23528953 tcgtaaaatcgcaatcaaaatcgaaggattttactcaaggacttttgtagaatcgatata 23528894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 136 - 218
Target Start/End: Original strand, 14074292 - 14074374
Alignment:
Q  136 aaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatata 218  Q
    |||| |||||||||||| | || || |||||||  |||||||||||||| |||||||||||  | ||||||| |||| |||||    
T  14074292 aaagggaatagcaaaattggaactcataaaatcacaatcaaaatcgaaggattttactcaaggacttttgtagaatcgatata 14074374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 196
Target Start/End: Original strand, 16125287 - 16125324
Alignment:
Q  159 tcgtaaaatcgtaatcaaaatcgaagaattttactcaa 196  Q
    ||||||||||| |||||||||||||| |||||||||||    
T  16125287 tcgtaaaatcgcaatcaaaatcgaaggattttactcaa 16125324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 135 - 207
Target Start/End: Original strand, 9128646 - 9128718
Alignment:
Q  135 aaaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgta 207  Q
    ||||| ||||||||||||||  | ||||||||||   ||||||||||||| |||||||| ||  |||||||||    
T  9128646 aaaagggaatagcaaaatcgggactcgtaaaatcacgatcaaaatcgaaggattttactaaaggatttttgta 9128718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 144 - 196
Target Start/End: Original strand, 17197346 - 17197398
Alignment:
Q  144 tagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaa 196  Q
    ||||||||||| || ||||||||||| ||  |||||||||| |||||||||||    
T  17197346 tagcaaaatcggaactcgtaaaatcgcaactaaaatcgaaggattttactcaa 17197398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 140 - 196
Target Start/End: Original strand, 27502168 - 27502224
Alignment:
Q  140 agaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaa 196  Q
    |||||||||||| ||| | || |||||| | |||||||||||||| |||||||||||    
T  27502168 agaatagcaaaaccgagactcataaaattgcaatcaaaatcgaaggattttactcaa 27502224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 3e-21; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 136 - 220
Target Start/End: Complemental strand, 37240559 - 37240475
Alignment:
Q  136 aaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatataaa 220  Q
    |||||||| ||| ||||||| ||||||||||||| |||||||||||||| |||||||||||||| ||||||| |||| |||||||    
T  37240559 aaagagaagagctaaatcgacaatcgtaaaatcgcaatcaaaatcgaaggattttactcaactacttttgtagaatcgatataaa 37240475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 136 - 207
Target Start/End: Original strand, 6346764 - 6346835
Alignment:
Q  136 aaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgta 207  Q
    |||| ||| ||||||||||||||||||||||||  |||||||||||||| |||||||||||||| |||||||    
T  6346764 aaagggaagagcaaaatcgaaaatcgtaaaatcacaatcaaaatcgaaggattttactcaactacttttgta 6346835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 141 - 219
Target Start/End: Original strand, 8010950 - 8011028
Alignment:
Q  141 gaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatataa 219  Q
    ||||||||||||||  | ||||||||||| |||||||||||||| ||||||||||||||||||| || |||| ||||||    
T  8010950 gaatagcaaaatcgggactcgtaaaatcgcaatcaaaatcgaaggattttactcaactatttttatagaatcgatataa 8011028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 145 - 212
Target Start/End: Complemental strand, 10394921 - 10394854
Alignment:
Q  145 agcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatc 212  Q
    ||||||||| ||||||||||||||| |||||||||||||| | |||||||||||| ||||||| ||||    
T  10394921 agcaaaatcaaaaatcgtaaaatcgcaatcaaaatcgaaggactttactcaactacttttgtagaatc 10394854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 102 - 218
Target Start/End: Complemental strand, 7452859 - 7452744
Alignment:
Q  102 aaggttgtcaaagttgggatattgctttagattaaaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatt 201  Q
    |||||||||||| || |||| |||||| || |  |||| ||| || ||| | |||||||||||||||| |||||||||||||| | |||||||||||| |    
T  7452859 aaggttgtcaaaattaggattttgcttcaggtcgaaagggaagagaaaagttgaaaatcgtaaaatcgcaatcaaaatcgaagga-tttactcaactact 7452761  T
Q  202 tttgtaaaatccatata 218  Q
    |||||| |||| |||||    
T  7452760 tttgtagaatcaatata 7452744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 143 - 219
Target Start/End: Complemental strand, 10143213 - 10143137
Alignment:
Q  143 atagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatataa 219  Q
    ||||||||||  | ||||||||||||| |||||||||||||| |||||| ||||||| ||||||| |||| ||||||    
T  10143213 atagcaaaattaacaatcgtaaaatcgcaatcaaaatcgaaggattttattcaactaattttgtagaatcgatataa 10143137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 139 - 218
Target Start/End: Original strand, 8743577 - 8743656
Alignment:
Q  139 gagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatata 218  Q
    |||| |||||||||| ||||| |||| ||||||||||||||||||  ||||||||||||||  |||||| |||| |||||    
T  8743577 gagactagcaaaatcaaaaatagtaacatcgtaatcaaaatcgaaagattttactcaactacatttgtataatcgatata 8743656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 136 - 218
Target Start/End: Original strand, 5361774 - 5361856
Alignment:
Q  136 aaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatata 218  Q
    |||||||| |||||||| || ||||||||||| | || |||||||||||  ||||||||||||| ||||||| |||| |||||    
T  5361774 aaagagaagagcaaaatagacaatcgtaaaattgcaaacaaaatcgaagggttttactcaactacttttgtagaatcgatata 5361856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 136 - 198
Target Start/End: Complemental strand, 7045264 - 7045202
Alignment:
Q  136 aaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaact 198  Q
    |||| ||| ||||||||| |||||| |||||||| |||||||||||||| |||||||||||||    
T  7045264 aaagggaagagcaaaatcaaaaatcataaaatcgcaatcaaaatcgaaggattttactcaact 7045202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 102 - 196
Target Start/End: Complemental strand, 9770466 - 9770372
Alignment:
Q  102 aaggttgtcaaagttgggatattgctttagattaaaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaa 196  Q
    |||||||||||| | ||||  || |||||| |  |||| ||||||||||||||  | ||||||||||| |||||||||||||| |||||||||||    
T  9770466 aaggttgtcaaaatcgggactttactttaggtcgaaagggaatagcaaaatcgggactcgtaaaatcgcaatcaaaatcgaaggattttactcaa 9770372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 102 - 207
Target Start/End: Original strand, 18459406 - 18459511
Alignment:
Q  102 aaggttgtcaaagttgggatattgctttagattaaaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatt 201  Q
    |||||||||||| | | ||| |||||| || || ||||  || ||||||||||| ||||||||||||| ||| |||||||||| |||| ||| ||||| |    
T  18459406 aaggttgtcaaaatcgagattttgcttcaggttgaaaggaaagagcaaaatcgacaatcgtaaaatcgcaattaaaatcgaaggatttgacttaactaat 18459505  T
Q  202 tttgta 207  Q
    ||||||    
T  18459506 tttgta 18459511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 136 - 212
Target Start/End: Original strand, 5943068 - 5943144
Alignment:
Q  136 aaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatc 212  Q
    |||| ||| ||||||||| ||||||||||||||| ||  ||||| |||| |||||||||||||| ||||||| ||||    
T  5943068 aaagggaagagcaaaatcaaaaatcgtaaaatcgcaagtaaaattgaaggattttactcaactacttttgtagaatc 5943144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 136 - 212
Target Start/End: Complemental strand, 4157350 - 4157271
Alignment:
Q  136 aaagagaatagcaaaatcgaaaatc---gtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatc 212  Q
    |||| ||| ||||||||||||||||   ||||||||| |||||| ||||||  |||||||||||||| ||||||| ||||    
T  4157350 aaagggaagagcaaaatcgaaaatcattgtaaaatcgcaatcaagatcgaaagattttactcaactacttttgtagaatc 4157271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 136 - 212
Target Start/End: Complemental strand, 4157637 - 4157558
Alignment:
Q  136 aaagagaatagcaaaatcgaaaatc---gtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatc 212  Q
    |||| ||| ||||||||||||||||   ||||||||| |||||| ||||||  |||||||||||||| ||||||| ||||    
T  4157637 aaagggaagagcaaaatcgaaaatcattgtaaaatcgcaatcaagatcgaaagattttactcaactacttttgtagaatc 4157558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 102 - 207
Target Start/End: Complemental strand, 8889570 - 8889466
Alignment:
Q  102 aaggttgtcaaagttgggatattgctttagattaaaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatt 201  Q
    |||||||||||| | ||||| |||||| || |  |||||||  |||||||| || ||| ||||||||| || ||||||||||| || ||||||||||| |    
T  8889570 aaggttgtcaaaatcgggattttgcttcaggtcgaaagagag-agcaaaattgacaattgtaaaatcgcaaccaaaatcgaaggatcttactcaactact 8889472  T
Q  202 tttgta 207  Q
    ||||||    
T  8889471 tttgta 8889466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 105 - 180
Target Start/End: Original strand, 46664152 - 46664227
Alignment:
Q  105 gttgtcaaagttgggatattgctttagatt-aaaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatc 180  Q
    ||||||||| ||||||| |||||| || |  |||||| |||||||||||||||||||| ||||||| ||||||||||    
T  46664152 gttgtcaaaattgggattttgcttcaggtcgaaaaga-aatagcaaaatcgaaaatcggaaaatcgcaatcaaaatc 46664227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 159 - 219
Target Start/End: Complemental strand, 55476285 - 55476225
Alignment:
Q  159 tcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatataa 219  Q
    ||||||||||| |||||||||||||| |||||||||||  | ||||||| |||| ||||||    
T  55476285 tcgtaaaatcgcaatcaaaatcgaaggattttactcaaggacttttgtagaatcgatataa 55476225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 142 - 196
Target Start/End: Complemental strand, 5375979 - 5375925
Alignment:
Q  142 aatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaa 196  Q
    ||||| |||||||  | ||||||||||| |||||||||||||| |||||||||||    
T  5375979 aatagtaaaatcgggactcgtaaaatcgcaatcaaaatcgaaggattttactcaa 5375925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 176 - 218
Target Start/End: Original strand, 5884129 - 5884171
Alignment:
Q  176 aaatcgaagaattttactcaactatttttgtaaaatccatata 218  Q
    ||||||||| |||||||||||||||||||||| |||| |||||    
T  5884129 aaatcgaaggattttactcaactatttttgtagaatcaatata 5884171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 136 - 218
Target Start/End: Complemental strand, 13023878 - 13023796
Alignment:
Q  136 aaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatata 218  Q
    ||||||||||||||||||| || ||||||||||  |||||| || |||  ||||||| |||  | |||||||||||| |||||    
T  13023878 aaagagaatagcaaaatcggaactcgtaaaatcacaatcaagatagaatgattttacccaaggaattttgtaaaatcgatata 13023796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 219
Target Start/End: Complemental strand, 7045057 - 7045000
Alignment:
Q  162 taaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatataa 219  Q
    |||||||| |||||||||||||  |||||||||||||| ||||| | |||| ||||||    
T  7045057 taaaatcgcaatcaaaatcgaatgattttactcaactacttttgaataatcgatataa 7045000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 194
Target Start/End: Original strand, 13551486 - 13551539
Alignment:
Q  141 gaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactc 194  Q
    ||||||||||||| | | ||||||||||| ||| |||||||||| |||||||||    
T  13551486 gaatagcaaaatcaagactcgtaaaatcgcaattaaaatcgaaggattttactc 13551539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 3e-21; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 102 - 222
Target Start/End: Complemental strand, 8428576 - 8428456
Alignment:
Q  102 aaggttgtcaaagttgggatattgctttagattaaaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatt 201  Q
    |||||||||||| | ||||| ||||||||| |  |||| |||||| |||||| |||||  |||||||| |||||||||||||| ||||| ||||||||||    
T  8428576 aaggttgtcaaaatcgggattttgctttaggtcgaaagggaatagaaaaatcaaaaattctaaaatcgcaatcaaaatcgaaggattttgctcaactatt 8428477  T
Q  202 tttgtaaaatccatataaaaa 222  Q
    |||||| |||| |||| ||||    
T  8428476 tttgtagaatcaatatcaaaa 8428456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 102 - 218
Target Start/End: Complemental strand, 19245943 - 19245827
Alignment:
Q  102 aaggttgtcaaagttgggatattgctttagattaaaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatt 201  Q
    |||||||||||| | ||||| |||||| |  || |||| ||||||||||||| ||||||||||||||| |||||||||| ||| |||||||| ||||| |    
T  19245943 aaggttgtcaaaatcgggattttgcttcaagttgaaagggaatagcaaaatcaaaaatcgtaaaatcgcaatcaaaatctaaggattttacttaactact 19245844  T
Q  202 tttgtaaaatccatata 218  Q
    |||||| |||| |||||    
T  19245843 tttgtagaatcgatata 19245827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 148 - 219
Target Start/End: Original strand, 13502494 - 13502565
Alignment:
Q  148 aaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatataa 219  Q
    |||||||||||||||||||||||||||||||| |||| || ||| ||||||||||||||| |||| ||||||    
T  13502494 aaaatcgaaaatcgtaaaatcgtaatcaaaattgaaggatattagtcaactatttttgtagaatctatataa 13502565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 136 - 218
Target Start/End: Complemental strand, 20064043 - 20063961
Alignment:
Q  136 aaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatata 218  Q
    |||| ||||||||||||||| | ||||||||||| ||||||||||||||||||||||||||  | ||||||| |||| |||||    
T  20064043 aaagggaatagcaaaatcgagactcgtaaaatcgcaatcaaaatcgaagaattttactcaaggacttttgtagaatcgatata 20063961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 145 - 219
Target Start/End: Complemental strand, 27407103 - 27407028
Alignment:
Q  145 agcaaaatcgaaaa-tcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatataa 219  Q
    |||||||||||||| |||||| |||| |||||||||| |||||||||||||||||| ||||| | |||| ||||||    
T  27407103 agcaaaatcgaaaaatcgtaatatcgcaatcaaaatccaagaattttactcaactacttttggataatcaatataa 27407028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 147 - 207
Target Start/End: Complemental strand, 15628053 - 15627993
Alignment:
Q  147 caaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgta 207  Q
    ||||||||||||| ||||||| | ||||||||||||||  ||||||||||||| |||||||    
T  15628053 caaaatcgaaaattgtaaaatggaaatcaaaatcgaaggtttttactcaactacttttgta 15627993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 144 - 218
Target Start/End: Complemental strand, 974651 - 974576
Alignment:
Q  144 tagcaaaatcgaaaa-tcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatata 218  Q
    ||||||||||| ||| ||||||||||| |||||||||||||| |||||||||||  | ||||||| |||| |||||    
T  974651 tagcaaaatcggaaactcgtaaaatcgcaatcaaaatcgaaggattttactcaaggacttttgtagaatcgatata 974576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 135 - 218
Target Start/End: Complemental strand, 1405104 - 1405021
Alignment:
Q  135 aaaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatata 218  Q
    ||||| ||||||||||||||  | || |||||||| |||||||||||||| |||||||||||  | ||||||| |||| |||||    
T  1405104 aaaagggaatagcaaaatcggtactcataaaatcgcaatcaaaatcgaaggattttactcaagaacttttgtagaatcgatata 1405021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 145 - 219
Target Start/End: Complemental strand, 16767097 - 16767022
Alignment:
Q  145 agcaaaatcgaaaa-tcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatataa 219  Q
    |||||||||||||| || |||||||| ||||||||| |||| |||||||||||||| |||| || |||| ||||||    
T  16767097 agcaaaatcgaaaaatcataaaatcgcaatcaaaattgaaggattttactcaactacttttatagaatcgatataa 16767022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 135 - 218
Target Start/End: Original strand, 31237784 - 31237867
Alignment:
Q  135 aaaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatata 218  Q
    ||||| |||||| |||||||  | ||||||||||| |||||| ||||||| |||||||||||  | |||||||||||| |||||    
T  31237784 aaaagggaatagtaaaatcgggactcgtaaaatcgcaatcaatatcgaaggattttactcaaggacttttgtaaaatcgatata 31237867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 141 - 219
Target Start/End: Original strand, 19262130 - 19262208
Alignment:
Q  141 gaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatataa 219  Q
    ||||||||||||||  | ||||||||||| |||||||||||||  |||||||||||  | ||||||| |||| ||||||    
T  19262130 gaatagcaaaatcgggactcgtaaaatcgcaatcaaaatcgaaagattttactcaaggacttttgtagaatcgatataa 19262208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 136 - 196
Target Start/End: Complemental strand, 34167609 - 34167548
Alignment:
Q  136 aaagagaatagcaaaatcgaaaatcgtaaaatcgtaatc-aaaatcgaagaattttactcaa 196  Q
    |||| ||||||||||||||||||||||||||||| |||| || ||||||  |||||||||||    
T  34167609 aaagggaatagcaaaatcgaaaatcgtaaaatcgcaatctaacatcgaatgattttactcaa 34167548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 196
Target Start/End: Original strand, 15588664 - 15588724
Alignment:
Q  136 aaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaa 196  Q
    |||||||| || |||||||| |||| |||||||| || ||||||||||| |||||||||||    
T  15588664 aaagagaaaagaaaaatcgacaatcataaaatcgcaaccaaaatcgaaggattttactcaa 15588724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 144 - 196
Target Start/End: Original strand, 20034039 - 20034091
Alignment:
Q  144 tagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaa 196  Q
    |||||||||||| | ||||||||||| ||||||||| |||| |||||||||||    
T  20034039 tagcaaaatcgagactcgtaaaatcgcaatcaaaattgaaggattttactcaa 20034091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 144 - 196
Target Start/End: Original strand, 27523913 - 27523965
Alignment:
Q  144 tagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaa 196  Q
    |||||||||||  | ||||||||||| |||||||||||||| |||||||||||    
T  27523913 tagcaaaatcgggactcgtaaaatcgcaatcaaaatcgaaggattttactcaa 27523965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 159 - 222
Target Start/End: Original strand, 25538977 - 25539040
Alignment:
Q  159 tcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatataaaaa 222  Q
    ||||||||||| |||||||||  ||| |||||||| ||||| ||||||| |||| |||||||||    
T  25538977 tcgtaaaatcgcaatcaaaattaaaggattttactgaactacttttgtagaatcgatataaaaa 25539040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 159 - 222
Target Start/End: Complemental strand, 36430145 - 36430082
Alignment:
Q  159 tcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatataaaaa 222  Q
    ||||||||||| |||||||||||||| || ||||||||  ||||||||| |||| ||| |||||    
T  36430145 tcgtaaaatcgcaatcaaaatcgaaggatattactcaataatttttgtagaatcgataaaaaaa 36430082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 219
Target Start/End: Original strand, 35565766 - 35565849
Alignment:
Q  139 gagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaatt---ttactcaactatttttgtaaaatccatataa 219  Q
    ||||| ||||||||||| ||| ||||||||| ||  |||||||||| |||   ||||||||||| ||||||| |||| ||||||    
T  35565766 gagaagagcaaaatcgataattgtaaaatcgcaactaaaatcgaaggattttattactcaactacttttgtagaatcgatataa 35565849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 144 - 196
Target Start/End: Complemental strand, 7302094 - 7302042
Alignment:
Q  144 tagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaa 196  Q
    |||||||||||  | ||||||||| | |||||||||||||| |||||||||||    
T  7302094 tagcaaaatcgggactcgtaaaattgcaatcaaaatcgaaggattttactcaa 7302042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 136 - 192
Target Start/End: Complemental strand, 19492188 - 19492132
Alignment:
Q  136 aaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttac 192  Q
    |||||||| | ||||||  |||||||||||| ||||||||||||||| | |||||||    
T  19492188 aaagagaacaacaaaattaaaaatcgtaaaaccgtaatcaaaatcgatggattttac 19492132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0603 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: scaffold0603
Description:

Target: scaffold0603; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 145 - 207
Target Start/End: Original strand, 8777 - 8839
Alignment:
Q  145 agcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgta 207  Q
    |||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||    
T  8777 agcaaaatcgaaaatcataaaatcgtaatcaaaatcgaaggattttactcaactacttttgta 8839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0042 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 106 - 219
Target Start/End: Original strand, 93483 - 93597
Alignment:
Q  106 ttgtcaaagttgggatattgctttagattaaaagagaatagcaaaatcga-aaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactattttt 204  Q
    |||||||| || || | |||||| || |||||||| || ||||||||||| |||| |||||||||||||||||||||||| |||||| ||||||| ||||    
T  93483 ttgtcaaaattagggttttgcttcaggttaaaagaaaagagcaaaatcgacaaattgtaaaatcgtaatcaaaatcgaaggattttattcaactactttt 93582  T
Q  205 gtaaaatccatataa 219  Q
    ||| |||| ||||||    
T  93583 gtagaatcgatataa 93597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0534 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0534
Description:

Target: scaffold0534; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 118 - 207
Target Start/End: Complemental strand, 1008 - 919
Alignment:
Q  118 ggatattgctttagattaaaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgta 207  Q
    |||| |||||| || | ||||| ||| |||||||| |||||||||||||| | ||||||||||||||||||||||||||||| |||||||    
T  1008 ggattttgcttcaggtcaaaagggaagagcaaaattgaaaatcgtaaaattgcaatcaaaatcgaagaattttactcaactacttttgta 919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 118 - 207
Target Start/End: Complemental strand, 17566436 - 17566347
Alignment:
Q  118 ggatattgctttagattaaaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgta 207  Q
    |||| |||||| || | ||||| ||| |||||||| |||||||||||||| | ||||||||||||||||||||||||||||| |||||||    
T  17566436 ggattttgcttcaggtcaaaagggaagagcaaaattgaaaatcgtaaaattgcaatcaaaatcgaagaattttactcaactacttttgta 17566347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 102 - 219
Target Start/End: Complemental strand, 17647351 - 17647234
Alignment:
Q  102 aaggttgtcaaagttgggatattgctttagattaaaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatt 201  Q
    |||||||| ||| | ||||| |||||| || |  |||||||  ||||||||||| |||| |||||||| |||||||||||||| |||||||||||||| |    
T  17647351 aaggttgttaaaatcgggattttgcttcaggtcgaaagagatgagcaaaatcgacaatcataaaatcgcaatcaaaatcgaaggattttactcaactagt 17647252  T
Q  202 tttgtaaaatccatataa 219  Q
    |||||| |||| ||||||    
T  17647251 tttgtagaatcgatataa 17647234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 136 - 207
Target Start/End: Complemental strand, 6811139 - 6811068
Alignment:
Q  136 aaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgta 207  Q
    |||||||| ||||||||||| ||||||||||||| || |||||||||||||||||| ||||||| |||||||    
T  6811139 aaagagaagagcaaaatcgacaatcgtaaaatcgcaaccaaaatcgaagaattttaatcaactacttttgta 6811068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 102 - 207
Target Start/End: Original strand, 29384087 - 29384192
Alignment:
Q  102 aaggttgtcaaagttgggatattgctttagattaaaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatt 201  Q
    |||||||||||| | ||||| |||||| || |  ||||| || || |||||||| ||||||||||||| || ||||||||||| |||||||||||||| |    
T  29384087 aaggttgtcaaaatcgggattttgcttcaggtcgaaagaaaagagaaaaatcgacaatcgtaaaatcgcaaccaaaatcgaaggattttactcaactact 29384186  T
Q  202 tttgta 207  Q
    ||||||    
T  29384187 tttgta 29384192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 136 - 219
Target Start/End: Original strand, 24056379 - 24056462
Alignment:
Q  136 aaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatataa 219  Q
    |||| ||| |||||||| ||| ||| |||||| |||||||||||||||| |||||||||||||| ||||||| |||| ||||||    
T  24056379 aaagggaagagcaaaattgaatatcataaaatggtaatcaaaatcgaaggattttactcaactagttttgtagaatcaatataa 24056462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 136 - 222
Target Start/End: Complemental strand, 15231941 - 15231855
Alignment:
Q  136 aaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatataaaaa 222  Q
    |||||||| ||||||||||| ||||||||||||| ||  ||||||| |  |||||||||||||| ||||||| |||| |||||||||    
T  15231941 aaagagaagagcaaaatcgacaatcgtaaaatcgcaactaaaatcgtacgattttactcaactacttttgtagaatcgatataaaaa 15231855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 104 - 188
Target Start/End: Original strand, 11973942 - 11974026
Alignment:
Q  104 ggttgtcaaagttgggatattgctttagattaaaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaatt 188  Q
    |||||||||| |  |||| |||| | ||||| ||||||||||||||||||||||||| |||||||| |||| |||| ||||||||    
T  11973942 ggttgtcaaaatcaggattttgcatcagattgaaagagaatagcaaaatcgaaaatcataaaatcgcaatcgaaattgaagaatt 11974026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 136 - 195
Target Start/End: Complemental strand, 2040439 - 2040380
Alignment:
Q  136 aaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactca 195  Q
    ||||||| ||||||||||| || ||||||||||| |||||||||||||| ||||||||||    
T  2040439 aaagagagtagcaaaatcggaactcgtaaaatcgcaatcaaaatcgaaggattttactca 2040380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 136 - 219
Target Start/End: Original strand, 22910012 - 22910095
Alignment:
Q  136 aaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatataa 219  Q
    |||||||| || |||||||| ||||||||||||| || | |||| |||| |||||| ||||||||||||||| |||| ||||||    
T  22910012 aaagagaagagaaaaatcgacaatcgtaaaatcgcaaccgaaattgaaggattttattcaactatttttgtagaatcgatataa 22910095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 102 - 192
Target Start/End: Complemental strand, 11879954 - 11879864
Alignment:
Q  102 aaggttgtcaaagttgggatattgctttagattaaaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttac 192  Q
    |||||||||||| | ||||| || ||| || | ||||| |||||| ||||||| || ||||||||||| |||||||||||||| |||||||    
T  11879954 aaggttgtcaaaatcgggattttacttcaggtcaaaagggaatagtaaaatcggaactcgtaaaatcgcaatcaaaatcgaaggattttac 11879864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 102 - 192
Target Start/End: Complemental strand, 11897370 - 11897280
Alignment:
Q  102 aaggttgtcaaagttgggatattgctttagattaaaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttac 192  Q
    |||||||||||| | ||||| || ||| || | ||||| |||||| ||||||| || ||||||||||| |||||||||||||| |||||||    
T  11897370 aaggttgtcaaaatcgggattttacttcaggtcaaaagggaatagtaaaatcggaactcgtaaaatcgcaatcaaaatcgaaggattttac 11897280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 136 - 218
Target Start/End: Original strand, 24414096 - 24414178
Alignment:
Q  136 aaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatata 218  Q
    |||| ||||||||||||  | | ||||||||||| |||||||||||||| |||||||||||  ||||||||| |||| |||||    
T  24414096 aaagggaatagcaaaatttagactcgtaaaatcgcaatcaaaatcgaaggattttactcaagaatttttgtagaatcgatata 24414178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 136 - 218
Target Start/End: Complemental strand, 45403349 - 45403267
Alignment:
Q  136 aaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatata 218  Q
    |||| ||||||||||||||| | ||||||||||| |||||||||||||| |||||||| ||  | ||||||| |||| |||||    
T  45403349 aaagggaatagcaaaatcgagactcgtaaaatcgcaatcaaaatcgaaggattttacttaaagacttttgtagaatcgatata 45403267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 136 - 218
Target Start/End: Original strand, 26574926 - 26575008
Alignment:
Q  136 aaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatata 218  Q
    ||||| ||||| ||||| ||| |||||||||||| ||||||||| |||| |||||||  |||||||| |||| ||| ||||||    
T  26574926 aaagacaatagaaaaattgaatatcgtaaaatcgcaatcaaaattgaaggattttacctaactatttatgtagaattcatata 26575008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 162 - 219
Target Start/End: Complemental strand, 15294963 - 15294906
Alignment:
Q  162 taaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatataa 219  Q
    |||||||| |||||||||||||| |||||||||||  | ||||||| |||||||||||    
T  15294963 taaaatcgcaatcaaaatcgaaggattttactcaagaacttttgtagaatccatataa 15294906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 162 - 219
Target Start/End: Complemental strand, 15475332 - 15475275
Alignment:
Q  162 taaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatataa 219  Q
    |||||||| |||||||||||||| |||||||||||  | ||||||| |||||||||||    
T  15475332 taaaatcgcaatcaaaatcgaaggattttactcaagaacttttgtagaatccatataa 15475275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 154 - 196
Target Start/End: Original strand, 7489175 - 7489217
Alignment:
Q  154 gaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaa 196  Q
    |||||| ||||||||| |||||||||||| |||||||||||||    
T  7489175 gaaaattgtaaaatcgcaatcaaaatcgatgaattttactcaa 7489217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 157 - 219
Target Start/End: Original strand, 15761188 - 15761250
Alignment:
Q  157 aatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatataa 219  Q
    ||||||||||||| |||  ||||||||| ||||||||||| || ||||||| |||| ||||||    
T  15761188 aatcgtaaaatcgcaatataaatcgaaggattttactcaattacttttgtagaatcgatataa 15761250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 196
Target Start/End: Original strand, 27836131 - 27836168
Alignment:
Q  159 tcgtaaaatcgtaatcaaaatcgaagaattttactcaa 196  Q
    ||||||||||| |||||||||||||| |||||||||||    
T  27836131 tcgtaaaatcgcaatcaaaatcgaaggattttactcaa 27836168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 136 - 196
Target Start/End: Original strand, 19704266 - 19704326
Alignment:
Q  136 aaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaa 196  Q
    |||| ||||||||||||||  | ||||||||||| |||||||||| ||| | |||||||||    
T  19704266 aaagggaatagcaaaatcgggactcgtaaaatcgcaatcaaaatcaaaggaatttactcaa 19704326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 102 - 218
Target Start/End: Original strand, 61089 - 61205
Alignment:
Q  102 aaggttgtcaaagttgggatattgctttagattaaaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatt 201  Q
    ||||||| |||| | ||||| |||||| || | ||||||||| || |||||  ||||||||||||||  ||||||||||||||||||||||| ||||| |    
T  61089 aaggttgccaaaatcgggattttgcttcaggtcaaaagagaaaagtaaaatttaaaatcgtaaaatcacaatcaaaatcgaagaattttacttaactact 61188  T
Q  202 tttgtaaaatccatata 218  Q
    |||||| |||| |||||    
T  61189 tttgtagaatcgatata 61205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 102 - 219
Target Start/End: Complemental strand, 145942 - 145825
Alignment:
Q  102 aaggttgtcaaagttgggatattgctttagattaaaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatt 201  Q
    |||||||||||| ||| ||| |||||| || |  ||||| |||||  ||||||||||||||||||| | |||||||||||||| ||||||||||  || |    
T  145942 aaggttgtcaaaattgagattttgcttcaggtcgaaagaaaatagttaaatcgaaaatcgtaaaatagcaatcaaaatcgaaggattttactcacttact 145843  T
Q  202 tttgtaaaatccatataa 219  Q
    |||||| |||| ||||||    
T  145842 tttgtagaatcgatataa 145825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0150 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: scaffold0150
Description:

Target: scaffold0150; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 148 - 219
Target Start/End: Complemental strand, 33246 - 33175
Alignment:
Q  148 aaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatataa 219  Q
    |||||||||||| ||||||||| |||||||||||||||||||||||||  || ||||||| |||| ||||||    
T  33246 aaaatcgaaaattgtaaaatcgcaatcaaaatcgaagaattttactcacttacttttgtagaatcgatataa 33175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0417 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0417
Description:

Target: scaffold0417; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 141 - 206
Target Start/End: Original strand, 7269 - 7334
Alignment:
Q  141 gaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgt 206  Q
    ||||||||||||||| | | |||||||||||||||||||||||| ||||||||||| || ||||||    
T  7269 gaatagcaaaatcgagacttgtaaaatcgtaatcaaaatcgaaggattttactcaagtacttttgt 7334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0510 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0510
Description:

Target: scaffold0510; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 139 - 199
Target Start/End: Original strand, 16 - 76
Alignment:
Q  139 gagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaacta 199  Q
    ||||| ||||||||||| ||||||||||||| || ||||||||||| ||||||||||||||    
T  16 gagaagagcaaaatcgacaatcgtaaaatcgaaaccaaaatcgaaggattttactcaacta 76  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0186 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 136 - 218
Target Start/End: Complemental strand, 8761 - 8679
Alignment:
Q  136 aaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatata 218  Q
    |||| ||||| |||||||| || ||||||||||| ||||||||| |||| ||||||||||| |||||| ||| |||| |||||    
T  8761 aaagggaataacaaaatcggaactcgtaaaatcgcaatcaaaattgaaggattttactcaagtattttcgtagaatcgatata 8679  T

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Target: scaffold0016 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 136 - 218
Target Start/End: Original strand, 56234 - 56316
Alignment:
Q  136 aaagagaatagcaaaatcgaaa-atcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatata 218  Q
    |||| ||||||||||||||| | ||| |||||||| |||||||||||||| |||||||||||  | ||||||| |||| |||||    
T  56234 aaagggaatagcaaaatcgagacatc-taaaatcgcaatcaaaatcgaaggattttactcaaggacttttgtagaatcgatata 56316  T

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Target: scaffold2084 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold2084
Description:

Target: scaffold2084; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 196
Target Start/End: Complemental strand, 149 - 88
Alignment:
Q  135 aaaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaa 196  Q
    ||||| || |||||||||||  | ||||||||| ||||| |||||||||| |||||||||||    
T  149 aaaagggagtagcaaaatcgggactcgtaaaattgtaattaaaatcgaaggattttactcaa 88  T

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Target: scaffold0007 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 184
Target Start/End: Original strand, 220433 - 220474
Alignment:
Q  143 atagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaag 184  Q
    ||||||||||||||||||||||||| | |||| |||||||||    
T  220433 atagcaaaatcgaaaatcgtaaaattgcaatcgaaatcgaag 220474  T

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Target: scaffold0182 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 144 - 212
Target Start/End: Complemental strand, 24698 - 24630
Alignment:
Q  144 tagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatc 212  Q
    |||||||||||  | ||||||||| |||||||||||| ||  ||||||||||| | |||||||| ||||    
T  24698 tagcaaaatcgggactcgtaaaattgtaatcaaaatcaaaagattttactcaaatttttttgtagaatc 24630  T

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Target: scaffold0079 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0079
Description:

Target: scaffold0079; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 144 - 196
Target Start/End: Original strand, 14743 - 14795
Alignment:
Q  144 tagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaa 196  Q
    |||||||||||  | ||||||||||| |||||||||||||| |||||| ||||    
T  14743 tagcaaaatcgggactcgtaaaatcgcaatcaaaatcgaaggattttattcaa 14795  T

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