View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9189_low_6 (Length: 406)
Name: NF9189_low_6
Description: NF9189
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9189_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 228; Significance: 1e-125; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 161 - 388
Target Start/End: Original strand, 36170857 - 36171084
Alignment:
| Q |
161 |
ttgtggaggaaacagacgaagggttagatagttttgctgttgtcaagtgttctttggatccacaacaagattttagagattcaatgattgagatgatcaa |
260 |
Q |
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| T |
36170857 |
ttgtggaggaaacagacgaagggttagatagttttgctgttgtcaagtgttctttggatccacaacaagattttagagattcaatgattgagatgatcaa |
36170956 |
T |
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| Q |
261 |
agagaaacatatcagtcagccagaagaaatggaagagttattagcgtgttatttgagtttgaattccaatgaattccatgatatcattatcaaagcgttt |
360 |
Q |
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| T |
36170957 |
agagaaacatatcagtcagccagaagaaatggaagagttattagcgtgttatttgagtttgaattccaatgaattccatgatatcattatcaaagcgttt |
36171056 |
T |
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| Q |
361 |
cgacaggtatggttatgcatgagccaat |
388 |
Q |
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| T |
36171057 |
cgacaggtatggttatgcatgagccaat |
36171084 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 12 - 90
Target Start/End: Original strand, 36170708 - 36170786
Alignment:
| Q |
12 |
gagcagagagctgcagaggaggaaaccaaagcagagttccaaggtaagagtacattctccaaagatggttactaaggtt |
90 |
Q |
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| T |
36170708 |
gagcagagagctgcagaggaggaaaccaaagcagagttccaaggtaagagtacattctccaaagatggctactaaggtt |
36170786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 59; Significance: 7e-25; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 184 - 374
Target Start/End: Original strand, 5294798 - 5294988
Alignment:
| Q |
184 |
ttagatagttttgctgttgtcaagtgttctttggatccacaacaagattttagagattcaatgattgagatgatcaaagagaaacatatcagtcagccag |
283 |
Q |
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| T |
5294798 |
ttagatagttttgctgtgattaaatgttcatcaaatccaaagcaggattttagagattcaatgattgagatgattgaagagaaacagattagtaaggcag |
5294897 |
T |
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| Q |
284 |
aagaaatggaagagttattagcgtgttatttgagtttgaattccaatgaattccatgatatcattatcaaagcgtttcgacaggtatggtt |
374 |
Q |
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| T |
5294898 |
aagaaatggaagagttgttggcatgttatttgactttgaatgctgatgagtatcatgatctcataatcaaagtatttaggcaggtatggtt |
5294988 |
T |
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