View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9189_low_7 (Length: 406)

Name: NF9189_low_7
Description: NF9189
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9189_low_7
NF9189_low_7
[»] chr4 (23 HSPs)
chr4 (17-406)||(48898195-48898599)
chr4 (178-313)||(45366583-45366718)
chr4 (150-308)||(48862827-48862985)
chr4 (180-292)||(48170953-48171065)
chr4 (180-313)||(33134190-33134323)
chr4 (178-274)||(48148047-48148143)
chr4 (183-328)||(49044599-49044741)
chr4 (180-308)||(45372424-45372549)
chr4 (181-317)||(48870119-48870252)
chr4 (181-317)||(48885805-48885938)
chr4 (178-313)||(7904613-7904745)
chr4 (178-269)||(7907950-7908038)
chr4 (183-292)||(48735682-48735791)
chr4 (180-261)||(7822602-7822680)
chr4 (178-290)||(7771008-7771117)
chr4 (178-313)||(7774194-7774326)
chr4 (179-313)||(7238086-7238217)
chr4 (214-274)||(48156825-48156885)
chr4 (180-261)||(7800270-7800348)
chr4 (180-261)||(7813113-7813191)
chr4 (180-313)||(33133618-33133751)
chr4 (211-255)||(49048994-49049038)
chr4 (226-302)||(50668635-50668711)
[»] chr8 (6 HSPs)
chr8 (180-308)||(4032283-4032408)
chr8 (180-274)||(15348482-15348573)
chr8 (190-310)||(12199891-12200008)
chr8 (190-310)||(12444319-12444436)
chr8 (186-313)||(12194882-12195006)
chr8 (186-313)||(12439310-12439434)
[»] chr6 (2 HSPs)
chr6 (183-256)||(21980014-21980084)
chr6 (183-328)||(21015342-21015484)
[»] chr5 (3 HSPs)
chr5 (178-303)||(29687642-29687764)
chr5 (178-263)||(178650-178735)
chr5 (190-274)||(42562705-42562789)
[»] chr1 (1 HSPs)
chr1 (180-263)||(24340045-24340125)
[»] chr3 (1 HSPs)
chr3 (213-313)||(11006359-11006459)
[»] scaffold0508 (1 HSPs)
scaffold0508 (178-263)||(11893-11975)


Alignment Details
Target: chr4 (Bit Score: 331; Significance: 0; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 17 - 406
Target Start/End: Complemental strand, 48898599 - 48898195
Alignment:
Q  17 agcctctacatgaacatttgagttgaagatcagaataaggcaaaaaagtatggtttgcataagcagaatcatcgataaatgatgattctaaatcaataga 116  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  48898599 agcctctacatgaacatttgagttcaagatcagaataaggcaaaaaagtatgatttgcataagcagaatcatcgataaatgatgattctaaatcaataga 48898500  T
Q  117 tctaatttcaggaacggaatttgaattgatcgcaattctatgtgcttgtgttgcggcatgcagttgaaaatgtgaatttgcaaagtgggcatcatgagag 216  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48898499 tctaatttcaggaactgaatttgaattgatcgcaattctatgtgcttgtgttgcggcatgcagttgaaaatgtgaatttgcaaagtgggcatcatgagag 48898400  T
Q  217 ataagtgagaaccaagacttacaaacacacttgaaacgtgtaagagagttcacaggtagactcagcagaatttgaatgaccaattcatgaggaagatgcg 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48898399 ataagtgagaaccaagacttacaaacacacttgaaacgtgtaagagacttcacaggtagactcagcagaatttgaatgaccaattcatgaggaagatgcg 48898300  T
Q  317 gtggattcttcttcctcttctttaagc---------------gacggttgtttctcctcatttcggtcagcttgatttagggtttggtttagttgataga 401  Q
    |||||||||||||||| ||||||||||               ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  48898299 gtggattcttcttccttttctttaagcgcctttgtcttgtgtgacggttgtttctcctcatttcggtcagcttgatttagggtttggcttagttgataga 48898200  T
Q  402 attat 406  Q
    |||||    
T  48898199 attat 48898195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 178 - 313
Target Start/End: Original strand, 45366583 - 45366718
Alignment:
Q  178 agttgaaaatgtgaatttgcaaagtgggcatcatgagagataagtgagaaccaagacttacaaacacacttgaaacgtgtaagagagttcacaggtagac 277  Q
    |||||||||||||||||||||||||| | |||| |||||||||| || |||||| |||||||||| |||||||||||| ||||||| ||||| ||||  |    
T  45366583 agttgaaaatgtgaatttgcaaagtgtgaatcacgagagataagagaaaaccaatacttacaaacgcacttgaaacgtataagagacttcactggtaacc 45366682  T
Q  278 tcagcagaatttgaatgaccaattcatgaggaagat 313  Q
    | || || ||||| || | |||||||||||||||||    
T  45366683 ttagtaggatttggatcatcaattcatgaggaagat 45366718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 150 - 308
Target Start/End: Complemental strand, 48862985 - 48862827
Alignment:
Q  150 aattctatgtgcttgtgttgcggcatgcagttgaaaatgtgaatttgcaaagtgggcatcatgagagataagtgagaaccaagacttacaaacacacttg 249  Q
    ||||||||| |  ||||||||||||   |||||||||||||||||||||||||| | ||||||||||||||| || ||||||||||| ||||| || |||    
T  48862985 aattctatgggtgtgtgttgcggcagtaagttgaaaatgtgaatttgcaaagtgaggatcatgagagataagagaaaaccaagacttgcaaacgcatttg 48862886  T
Q  250 aaacgtgtaagagagttcacaggtagactcagcagaatttgaatgaccaattcatgagg 308  Q
    |||||  ||||||| ||||| ||||  || ||||| ||| | |||| ||||||||||||    
T  48862885 aaacgaataagagacttcaccggtaaccttagcaggattaggatgatcaattcatgagg 48862827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 180 - 292
Target Start/End: Original strand, 48170953 - 48171065
Alignment:
Q  180 ttgaaaatgtgaatttgcaaagtgggcatcatgagagataagtgagaaccaagacttacaaacacacttgaaacgtgtaagagagttcacaggtagactc 279  Q
    ||||||||| |||||||||||||| | ||||||||||||||| |  |||||||||||||||||||| |||||||||  |||||| ||||| | ||  |||    
T  48170953 ttgaaaatgcgaatttgcaaagtgaggatcatgagagataagagcaaaccaagacttacaaacacatttgaaacgtagaagagacttcaccgataacctc 48171052  T
Q  280 agcagaatttgaa 292  Q
    |||||||||||||    
T  48171053 agcagaatttgaa 48171065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 180 - 313
Target Start/End: Original strand, 33134190 - 33134323
Alignment:
Q  180 ttgaaaatgtgaatttgcaaagtgggcatcatgagagataagtgagaaccaagacttacaaacacacttgaaacgtgtaagagagttcacaggtagactc 279  Q
    |||||||||||||||||||||||| | ||||| ||||||||| || || |||| ||||||||| || ||||||||  ||||||| ||||| ||||  |||    
T  33134190 ttgaaaatgtgaatttgcaaagtgaggatcattagagataagagaaaatcaaggcttacaaacgcatttgaaacgaataagagacttcaccggtaatctc 33134289  T
Q  280 agcagaatttgaatgaccaattcatgaggaagat 313  Q
    | ||||||  | |||| |||||||||||| ||||    
T  33134290 aacagaataaggatgatcaattcatgaggcagat 33134323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 178 - 274
Target Start/End: Original strand, 48148047 - 48148143
Alignment:
Q  178 agttgaaaatgtgaatttgcaaagtgggcatcatgagagataagtgagaaccaagacttacaaacacacttgaaacgtgtaagagagttcacaggta 274  Q
    |||| ||||||||||||||| ||||| | ||||||||||||||| || |||||||||||||| ||||| ||||||||  ||||||| ||||| ||||    
T  48148047 agttcaaaatgtgaatttgcgaagtgaggatcatgagagataagagaaaaccaagacttacagacacatttgaaacgaataagagacttcactggta 48148143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 183 - 328
Target Start/End: Original strand, 49044599 - 49044741
Alignment:
Q  183 aaaatgtgaatttgcaaagtgggcatcatgagagataagtgagaaccaagacttacaaacacacttgaaacgtgtaagagagttcacaggtagactcagc 282  Q
    |||||||||||||||||||||||  |   |||||||||| || |||||  |||||||||||||||||||||||  ||||||  |||| || |  ||||||    
T  49044599 aaaatgtgaatttgcaaagtgggttt---gagagataagagaaaaccataacttacaaacacacttgaaacgtaaaagagacatcactggcaacctcagc 49044695  T
Q  283 agaatttgaatgaccaattcatgaggaagatgcggtggattcttct 328  Q
    |||||  | |||| ||| |||||||| |||| ||||||||||||||    
T  49044696 agaataaggatgatcaagtcatgaggcagatacggtggattcttct 49044741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 180 - 308
Target Start/End: Original strand, 45372424 - 45372549
Alignment:
Q  180 ttgaaaatgtgaatttgcaaagtgggcatcatgagagataagtgagaaccaagacttacaaacacacttgaaacgtgtaagagagttcacaggtagactc 279  Q
    ||||||||||||||||||||| || | ||||   |||||||  || |||||||||||||||||||| ||||||||| ||||||| ||||| || |  ||     
T  45372424 ttgaaaatgtgaatttgcaaaatgaggatca---gagataatagaaaaccaagacttacaaacacatttgaaacgtataagagacttcaccggcaacctt 45372520  T
Q  280 agcagaatttgaatgaccaattcatgagg 308  Q
    || ||||||||||| | ||||||||||||    
T  45372521 agtagaatttgaatcatcaattcatgagg 45372549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 181 - 317
Target Start/End: Complemental strand, 48870252 - 48870119
Alignment:
Q  181 tgaaaatgtgaatttgcaaagtgggcatcatgagagataagtgagaaccaagacttacaaacacacttgaaacgtgtaagagagttcacaggtagactca 280  Q
    ||||||||||||||||||||  ||| |||    ||||||||  | ||||||||||||||||| || ||||||||  ||||||| ||||| ||||| ||||    
T  48870252 tgaaaatgtgaatttgcaaaaaggggatcg---gagataagaaaaaaccaagacttacaaacgcatttgaaacgaataagagaattcaccggtagcctca 48870156  T
Q  281 gcagaatttgaatgaccaattcatgaggaagatgcgg 317  Q
    ||||||||||||  | |||||||||| | ||||||||    
T  48870155 gcagaatttgaactatcaattcatgatgcagatgcgg 48870119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 181 - 317
Target Start/End: Complemental strand, 48885938 - 48885805
Alignment:
Q  181 tgaaaatgtgaatttgcaaagtgggcatcatgagagataagtgagaaccaagacttacaaacacacttgaaacgtgtaagagagttcacaggtagactca 280  Q
    ||||||||||||||||||||  ||| |||    ||||||||  | ||||||||||||||||| || ||||||||  ||||||| ||||| ||||| ||||    
T  48885938 tgaaaatgtgaatttgcaaaaaggggatcg---gagataagaaaaaaccaagacttacaaacgcatttgaaacgaataagagaattcaccggtagcctca 48885842  T
Q  281 gcagaatttgaatgaccaattcatgaggaagatgcgg 317  Q
    ||||||||||||  | |||||||||| | ||||||||    
T  48885841 gcagaatttgaactatcaattcatgatgcagatgcgg 48885805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 178 - 313
Target Start/End: Complemental strand, 7904745 - 7904613
Alignment:
Q  178 agttgaaaatgtgaatttgcaaagtgggcatcatgagagataagtgagaaccaagacttacaaacacacttgaaacgtgtaagagagttcacaggtagac 277  Q
    |||||||||||||||||||||||||| | ||||   |||||||| || |||||  ||||||||||||| ||||||||| ||||||| |||||||| |  |    
T  7904745 agttgaaaatgtgaatttgcaaagtgaggatca---gagataagagaaaaccataacttacaaacacatttgaaacgtataagagacttcacaggcaacc 7904649  T
Q  278 tcagcagaatttgaatgaccaattcatgaggaagat 313  Q
     || ||  |||||||| | ||||||| |||||||||    
T  7904648 acatcaagatttgaataatcaattcacgaggaagat 7904613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 178 - 269
Target Start/End: Complemental strand, 7908038 - 7907950
Alignment:
Q  178 agttgaaaatgtgaatttgcaaagtgggcatcatgagagataagtgagaaccaagacttacaaacacacttgaaacgtgtaagagagttcac 269  Q
    ||||||||||||||||||||||| |||| | ||   |||||||| || ||||| ||||||| |||| ||||||||||||||||||| |||||    
T  7908038 agttgaaaatgtgaatttgcaaaatggggagca---gagataagagaaaaccatgacttacgaacagacttgaaacgtgtaagagacttcac 7907950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 183 - 292
Target Start/End: Original strand, 48735682 - 48735791
Alignment:
Q  183 aaaatgtgaatttgcaaagtgggcatcatgagagataagtgagaaccaagacttacaaacacacttgaaacgtgtaagagagttcacaggtagactcagc 282  Q
    |||||||||||||||||| |  | ||||   |||||||| || |||||||||||||||||||| ||||||||  ||||||| ||||| ||||  |||||     
T  48735682 aaaatgtgaatttgcaaaatcagtatcacaggagataagagaaaaccaagacttacaaacacatttgaaacgaataagagacttcaccggtaacctcaga 48735781  T
Q  283 agaatttgaa 292  Q
    ||||||||||    
T  48735782 agaatttgaa 48735791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 180 - 261
Target Start/End: Complemental strand, 7822680 - 7822602
Alignment:
Q  180 ttgaaaatgtgaatttgcaaagtgggcatcatgagagataagtgagaaccaagacttacaaacacacttgaaacgtgtaaga 261  Q
    |||||| ||||||||||||||||||| ||||   |||||||| || ||||| || ||||||||||||||||||||| |||||    
T  7822680 ttgaaattgtgaatttgcaaagtggggatca---gagataagagaaaaccatgatttacaaacacacttgaaacgtataaga 7822602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 178 - 290
Target Start/End: Complemental strand, 7771117 - 7771008
Alignment:
Q  178 agttgaaaatgtgaatttgcaaagtgggcatcatgagagataagtgagaaccaagacttacaaacacacttgaaacgtgtaagagagttcacaggtagac 277  Q
    |||||||||||||||||| ||||||| | ||||   |||||||| || ||||||||||||||||| || ||||||| | ||||||| ||||| || |  |    
T  7771117 agttgaaaatgtgaattttcaaagtgaggatca---gagataagagaaaaccaagacttacaaacgcatttgaaacatataagagacttcaccggcaacc 7771021  T
Q  278 tcagcagaatttg 290  Q
    ||| |||||||||    
T  7771020 tcatcagaatttg 7771008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 178 - 313
Target Start/End: Original strand, 7774194 - 7774326
Alignment:
Q  178 agttgaaaatgtgaatttgcaaagtgggcatcatgagagataagtgagaaccaagacttacaaacacacttgaaacgtgtaagagagttcacaggtagac 277  Q
    ||||||||||||||||||||||| |||| |||   ||||||||| || |||||   |||||||||||| |||||| |  ||||||| ||||| || || |    
T  7774194 agttgaaaatgtgaatttgcaaaatggggatc---agagataagagaaaaccatagcttacaaacacatttgaaatgaataagagacttcaccggcagcc 7774290  T
Q  278 tcagcagaatttgaatgaccaattcatgaggaagat 313  Q
     || ||  |||||||| | |||||||||||||||||    
T  7774291 gcatcaagatttgaataatcaattcatgaggaagat 7774326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 179 - 313
Target Start/End: Original strand, 7238086 - 7238217
Alignment:
Q  179 gttgaaaatgtgaatttgcaaagtgggcatcatgagagataagtgagaaccaagacttacaaacacacttgaaacgtgtaagagagttcacaggtagact 278  Q
    |||| |||||||||||||||||||| |  |||   |||||||| || |||||||||||||||||||| |||||||   ||||||| ||||| || |  ||    
T  7238086 gttggaaatgtgaatttgcaaagtgagggtca---gagataagagaaaaccaagacttacaaacacatttgaaacagataagagacttcactggcaacct 7238182  T
Q  279 cagcagaatttgaatgaccaattcatgaggaagat 313  Q
    || ||||||||| ||||  | ||||||||| ||||    
T  7238183 catcagaatttggatgattagttcatgaggcagat 7238217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 274
Target Start/End: Original strand, 48156825 - 48156885
Alignment:
Q  214 gagataagtgagaaccaagacttacaaacacacttgaaacgtgtaagagagttcacaggta 274  Q
    |||||||| || ||||||||||||||||| ||||||||||||  |||||| ||||| ||||    
T  48156825 gagataagagaaaaccaagacttacaaacgcacttgaaacgtagaagagacttcaccggta 48156885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 180 - 261
Target Start/End: Complemental strand, 7800348 - 7800270
Alignment:
Q  180 ttgaaaatgtgaatttgcaaagtgggcatcatgagagataagtgagaaccaagacttacaaacacacttgaaacgtgtaaga 261  Q
    |||||| ||||||||||||||| ||| ||||   |||| ||| || ||||| || ||||||||||||||||||||| |||||    
T  7800348 ttgaaattgtgaatttgcaaagcggggatca---gagacaagagaaaaccatgatttacaaacacacttgaaacgtataaga 7800270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 180 - 261
Target Start/End: Complemental strand, 7813191 - 7813113
Alignment:
Q  180 ttgaaaatgtgaatttgcaaagtgggcatcatgagagataagtgagaaccaagacttacaaacacacttgaaacgtgtaaga 261  Q
    |||||| ||||| |||||||||||||  |||   |||||||| || ||||| || ||||||||||||||||||||| |||||    
T  7813191 ttgaaattgtgactttgcaaagtggggttca---gagataagagaaaaccatgatttacaaacacacttgaaacgtataaga 7813113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 313
Target Start/End: Complemental strand, 33133751 - 33133618
Alignment:
Q  180 ttgaaaatgtgaatttgcaaagtgggcatcatgagagataagtgagaaccaagacttacaaacacacttgaaacgtgtaagagagttcacaggtagactc 279  Q
    ||||||||| ||||||||||||||   ||||| ||||||||| || ||||||  ||||||||   | ||||||||  ||||||| ||||  ||||  ||     
T  33133751 ttgaaaatgcgaatttgcaaagtgaagatcattagagataagagaaaaccaaagcttacaaatgaatttgaaacgaataagagacttcattggtaacctt 33133652  T
Q  280 agcagaatttgaatgaccaattcatgaggaagat 313  Q
    ||||||||  | |||| |||||||||||| ||||    
T  33133651 agcagaataaggatgatcaattcatgaggcagat 33133618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 211 - 255
Target Start/End: Original strand, 49048994 - 49049038
Alignment:
Q  211 tgagagataagtgagaaccaagacttacaaacacacttgaaacgt 255  Q
    ||||||||||| || |||||  |||||||||||||||||||||||    
T  49048994 tgagagataagagaaaaccataacttacaaacacacttgaaacgt 49049038  T

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Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 226 - 302
Target Start/End: Complemental strand, 50668711 - 50668635
Alignment:
Q  226 aaccaagacttacaaacacacttgaaacgtgtaagagagttcacaggtagactcagcagaatttgaatgaccaattc 302  Q
    |||||||| |||||||| |||||||||||| ||||| | ||||| || |  |||| || ||||||||||| ||||||    
T  50668711 aaccaagatttacaaacgcacttgaaacgtataagatatttcacgggcaacctcaccaaaatttgaatgatcaattc 50668635  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 180 - 308
Target Start/End: Original strand, 4032283 - 4032408
Alignment:
Q  180 ttgaaaatgtgaatttgcaaagtgggcatcatgagagataagtgagaaccaagacttacaaacacacttgaaacgtgtaagagagttcacaggtagactc 279  Q
    ||||||||| |||||||||||||| | ||||   || ||||| |  |||||||| ||||||||||||||||||||| ||||||| ||||  ||||| |||    
T  4032283 ttgaaaatgcgaatttgcaaagtgaggatca---gatataagagttaaccaagatttacaaacacacttgaaacgtataagagacttcattggtagtctc 4032379  T
Q  280 agcagaatttgaatgaccaattcatgagg 308  Q
    || |  ||||| |||| ||||||||||||    
T  4032380 agtaagatttggatgatcaattcatgagg 4032408  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 180 - 274
Target Start/End: Complemental strand, 15348573 - 15348482
Alignment:
Q  180 ttgaaaatgtgaatttgcaaagtgggcatcatgagagataagtgagaaccaagacttacaaacacacttgaaacgtgtaagagagttcacaggta 274  Q
    |||||||||||||||||| ||||  | |||   ||||||||| || ||||||||||||||||| || ||||||||| ||||||| ||||| ||||    
T  15348573 ttgaaaatgtgaatttgcgaagtaaggatc---agagataagagaaaaccaagacttacaaacgcatttgaaacgtataagagacttcaccggta 15348482  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 190 - 310
Target Start/End: Complemental strand, 12200008 - 12199891
Alignment:
Q  190 gaatttgcaaagtgggcatcatgagagataagtgagaaccaagacttacaaacacacttgaaacgtgtaagagagttcacaggtagactcagcagaattt 289  Q
    |||||||||||||| | ||||   |||||||| || ||||| |||||||||||||| ||||||| |  |||||| ||||| || |  |||||||| ||||    
T  12200008 gaatttgcaaagtgaggatca---gagataagagaaaaccatgacttacaaacacatttgaaacataaaagagacttcaccggcaacctcagcaggattt 12199912  T
Q  290 gaatgaccaattcatgaggaa 310  Q
    ||||||  ||||||| |||||    
T  12199911 gaatgattaattcataaggaa 12199891  T

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Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 190 - 310
Target Start/End: Complemental strand, 12444436 - 12444319
Alignment:
Q  190 gaatttgcaaagtgggcatcatgagagataagtgagaaccaagacttacaaacacacttgaaacgtgtaagagagttcacaggtagactcagcagaattt 289  Q
    |||||||||||||| | ||||   |||||||| || ||||| |||||||||||||| ||||||| |  |||||| ||||| || |  |||||||| ||||    
T  12444436 gaatttgcaaagtgaggatca---gagataagagaaaaccatgacttacaaacacatttgaaacataaaagagacttcaccggcaacctcagcaggattt 12444340  T
Q  290 gaatgaccaattcatgaggaa 310  Q
    ||||||  ||||||| |||||    
T  12444339 gaatgattaattcataaggaa 12444319  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 313
Target Start/End: Complemental strand, 12195006 - 12194882
Alignment:
Q  186 atgtgaatttgcaaagtgggcatcatgagagataagtgagaaccaagacttacaaacacacttgaaacgtgtaagagagttcacaggtagactcagcaga 285  Q
    |||||||||||||||||| | |||   ||||||||| || ||||| ||||||||||  || ||||||| |  |||||| ||||| || |  ||||||||     
T  12195006 atgtgaatttgcaaagtgtggatc---agagataagagataaccatgacttacaaatgcatttgaaacataaaagagacttcaccggcaacctcagcagg 12194910  T
Q  286 atttgaatgaccaattcatgaggaagat 313  Q
    ||||||||||  ||||||  ||||||||    
T  12194909 atttgaatgattaattcagaaggaagat 12194882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 313
Target Start/End: Complemental strand, 12439434 - 12439310
Alignment:
Q  186 atgtgaatttgcaaagtgggcatcatgagagataagtgagaaccaagacttacaaacacacttgaaacgtgtaagagagttcacaggtagactcagcaga 285  Q
    |||||||||||||||||| | |||   ||||||||| || ||||| ||||||||||  || ||||||| |  |||||| ||||| || |  ||||||||     
T  12439434 atgtgaatttgcaaagtgtggatc---agagataagagataaccatgacttacaaatgcatttgaaacataaaagagacttcaccggcaacctcagcagg 12439338  T
Q  286 atttgaatgaccaattcatgaggaagat 313  Q
    ||||||||||  ||||||  ||||||||    
T  12439337 atttgaatgattaattcagaaggaagat 12439310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 183 - 256
Target Start/End: Original strand, 21980014 - 21980084
Alignment:
Q  183 aaaatgtgaatttgcaaagtgggcatcatgagagataagtgagaaccaagacttacaaacacacttgaaacgtg 256  Q
    |||||||||||| ||||||| || ||   ||||||| || || |||||||||||||||||||||||||||||||    
T  21980014 aaaatgtgaattcgcaaagttgggat---gagagatgagagaaaaccaagacttacaaacacacttgaaacgtg 21980084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 183 - 328
Target Start/End: Complemental strand, 21015484 - 21015342
Alignment:
Q  183 aaaatgtgaatttgcaaagtgggcatcatgagagataagtgagaaccaagacttacaaacacacttgaaacgtgtaagagagttcacaggtagactcagc 282  Q
    |||||||||| ||||||||||||  |   |||||||||| || ||| |  |||||||||||||||||||||||  ||||||  | || ||||  |||| |    
T  21015484 aaaatgtgaaattgcaaagtgggttt---gagagataagagaaaacaataacttacaaacacacttgaaacgtagaagagacatgaccggtaacctcaac 21015388  T
Q  283 agaatttgaatgaccaattcatgaggaagatgcggtggattcttct 328  Q
    | |||| | |||| |||||| ||||| |||| | ||||||||||||    
T  21015387 aaaattaggatgatcaattcttgaggcagatactgtggattcttct 21015342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 178 - 303
Target Start/End: Complemental strand, 29687764 - 29687642
Alignment:
Q  178 agttgaaaatgtgaatttgcaaagtgggcatcatgagagataagtgagaaccaagacttacaaacacacttgaaacgtgtaagagagttcacaggtagac 277  Q
    ||||||||||| |||||||||||||| |  |   |||| || || || |||||||||||||||||||||||||| ||| ||||||| ||||| ||||       
T  29687764 agttgaaaatgagaatttgcaaagtgaggtt---gagatatgagagaaaaccaagacttacaaacacacttgaagcgtataagagacttcactggtaact 29687668  T
Q  278 tcagcagaatttgaatgaccaattca 303  Q
    | || || |||||||||| |||||||    
T  29687667 ttagaaggatttgaatgatcaattca 29687642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 178 - 263
Target Start/End: Complemental strand, 178735 - 178650
Alignment:
Q  178 agttgaaaatgtgaatttgcaaagtgggcatcatgagagataagtgagaaccaagacttacaaacacacttgaaacgtgtaagaga 263  Q
    ||||||||||| |||  |||||| |||| |||||  ||||| || || |||||||||||||||||||| ||||||||  |||||||    
T  178735 agttgaaaatgggaaagtgcaaaatgggtatcattggagatgagagataaccaagacttacaaacacatttgaaacgaataagaga 178650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 190 - 274
Target Start/End: Original strand, 42562705 - 42562789
Alignment:
Q  190 gaatttgcaaagtgggcatcatgagagataagtgagaaccaagacttacaaacacacttgaaacgtgtaagagagttcacaggta 274  Q
    ||||||||||| | || || ||||||||| || || ||||||||||||||||| || ||||||||  ||||||| ||||| ||||    
T  42562705 gaatttgcaaactcggtattatgagagattagagaaaaccaagacttacaaacgcatttgaaacgaataagagaattcaccggta 42562789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 180 - 263
Target Start/End: Complemental strand, 24340125 - 24340045
Alignment:
Q  180 ttgaaaatgtgaatttgcaaagtgggcatcatgagagataagtgagaaccaagacttacaaacacacttgaaacgtgtaagaga 263  Q
    |||||| |||||||||||||||||   || || |||||||||||| ||||| |||||||||||| | ||||||||  |||||||    
T  24340125 ttgaaagtgtgaatttgcaaagtg---attatcagagataagtgaaaaccatgacttacaaacagatttgaaacgaataagaga 24340045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 213 - 313
Target Start/End: Original strand, 11006359 - 11006459
Alignment:
Q  213 agagataagtgagaaccaagacttacaaacacacttgaaacgtgtaagagagttcacaggtagactcagcagaatttgaatgaccaattcatgaggaaga 312  Q
    ||||||||| |  ||||| |||||||||||||||||||||||| |||| || ||||| || |  |||| ||  ||||| |||| |||||||||||| |||    
T  11006359 agagataagagttaaccatgacttacaaacacacttgaaacgtataagtgacttcaccggcaacctcaacaagatttgtatgatcaattcatgaggcaga 11006458  T
Q  313 t 313  Q
    |    
T  11006459 t 11006459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0508 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 178 - 263
Target Start/End: Complemental strand, 11975 - 11893
Alignment:
Q  178 agttgaaaatgtgaatttgcaaagtgggcatcatgagagataagtgagaaccaagacttacaaacacacttgaaacgtgtaagaga 263  Q
    ||||||||||||||||||||||||||   || || ||||||||| || ||||| |||||||||||  | ||||||||  |||||||    
T  11975 agttgaaaatgtgaatttgcaaagtg---attatcagagataagagaaaaccatgacttacaaacggatttgaaacggataagaga 11893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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