View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9189_low_9 (Length: 395)
Name: NF9189_low_9
Description: NF9189
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9189_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 40 - 378
Target Start/End: Complemental strand, 5837479 - 5837141
Alignment:
| Q |
40 |
cacaagaaagacatcataggacaaatttaacaagcatatactataatattattttttacatgacattttaagatataaataaaccattattagtagtttt |
139 |
Q |
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| T |
5837479 |
cacaagaaagacatcataggacaaatttaacaagcatatactataatattatttttaacatgacattttaagatataaataaaccattattagtagtttt |
5837380 |
T |
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| Q |
140 |
gtttcttctactcatgattgttaagcacattaaaaatttacaatctcaatcctctgaccccaaaacttgtccctaccacaaagcatagccacccacaaga |
239 |
Q |
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| T |
5837379 |
gtttcttctactcatgattgttaagcacattaaaaatttacaatctcaatcctctgaccccaaaacttgtccctaccacaaagcatagccacccacaaga |
5837280 |
T |
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| Q |
240 |
tagataatgtcacaactttcccacaccactagctttctgccacgtgtcatacacagattctctttatactcccaacaccaccaaaaacagcaagaacaat |
339 |
Q |
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| T |
5837279 |
tagataatgtcacaactttcccacaccactagttttctgccacgtgtcatacacagattctctttatactcccaacaccaccaaaaacagcaagaacaat |
5837180 |
T |
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| Q |
340 |
cactgcaaatacaaacttcacctatttgaacttccttaa |
378 |
Q |
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| T |
5837179 |
cactgcaaatacaaacttcacctatttgaacttccttaa |
5837141 |
T |
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