View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9190_high_3 (Length: 425)

Name: NF9190_high_3
Description: NF9190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9190_high_3
NF9190_high_3
[»] chr3 (30 HSPs)
chr3 (5-411)||(24839959-24840365)
chr3 (46-411)||(19943446-19943810)
chr3 (129-386)||(20005109-20005351)
chr3 (19-374)||(19857834-19858191)
chr3 (19-408)||(19853242-19853631)
chr3 (212-411)||(26651760-26651959)
chr3 (5-147)||(19956075-19956217)
chr3 (19-138)||(19848990-19849109)
chr3 (19-138)||(20036602-20036721)
chr3 (192-385)||(19818310-19818503)
chr3 (20-148)||(20016201-20016329)
chr3 (193-364)||(19812054-19812225)
chr3 (205-360)||(19955853-19956008)
chr3 (47-131)||(19812287-19812371)
chr3 (59-147)||(19838384-19838472)
chr3 (49-148)||(20046113-20046212)
chr3 (61-138)||(19989522-19989599)
chr3 (205-360)||(19838162-19838317)
chr3 (53-130)||(30914651-30914728)
chr3 (269-364)||(19989296-19989391)
chr3 (192-374)||(19950888-19951070)
chr3 (50-138)||(19951124-19951212)
chr3 (269-385)||(26646763-26646879)
chr3 (52-138)||(26647004-26647090)
chr3 (50-138)||(19818557-19818645)
chr3 (51-135)||(26653155-26653239)
chr3 (281-364)||(19848761-19848844)
chr3 (205-363)||(20045898-20046056)
chr3 (272-354)||(20016451-20016533)
chr3 (19-72)||(19971677-19971730)
[»] chr8 (4 HSPs)
chr8 (49-139)||(22689684-22689774)
chr8 (45-138)||(22652113-22652206)
chr8 (49-118)||(22685709-22685778)
chr8 (199-364)||(22652267-22652432)
[»] chr6 (1 HSPs)
chr6 (199-411)||(34408266-34408479)
[»] chr5 (4 HSPs)
chr5 (48-138)||(9815037-9815127)
chr5 (59-138)||(26354966-26355045)
chr5 (269-411)||(9814764-9814906)
chr5 (270-411)||(38435381-38435522)
[»] chr4 (3 HSPs)
chr4 (49-138)||(6397767-6397856)
chr4 (59-138)||(6398261-6398340)
chr4 (265-315)||(6397983-6398033)
[»] chr1 (2 HSPs)
chr1 (49-138)||(1717214-1717303)
chr1 (211-364)||(1716988-1717141)
[»] chr7 (5 HSPs)
chr7 (54-104)||(12581426-12581476)
chr7 (51-104)||(12497243-12497296)
chr7 (51-104)||(12521108-12521161)
chr7 (49-82)||(12580110-12580143)
chr7 (49-81)||(12519821-12519853)


Alignment Details
Target: chr3 (Bit Score: 387; Significance: 0; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 5 - 411
Target Start/End: Original strand, 24839959 - 24840365
Alignment:
Q  5 agatggacatcaacaggaaacaaagaacatttcactagagagtatttatgagggaaaacaaaaattgacaaccaagtagcaagaaatgcttcatgctcaa 104  Q
    ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24839959 agatgaacagcaacaggaaacaaagaacatttcactagagagtatttatgagggaaaacaaaaattgacaaccaagtagcaagaaatgcttcatgctcaa 24840058  T
Q  105 cttcactacctttatcgatgaaaatatccatccacactgatgtggaaggtgccatacctttcgaagtcctctcttggctttcaatgttgatgagcttctg 204  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  24840059 cttcactacctttatcgatgaaaatatccatccacactgatgtagaaggtgccatacctttcgaaatcctctcttggctttcaatgttgatgagcttctg 24840158  T
Q  205 ttccacctctctcatctcttgatcttcaagctgggcgaaaacaggaagaccaaagagagagtagccccccaaaacaatgacatcctccaaagtgattgtt 304  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24840159 ttccacctctctcatctcttgatcttcaaggtgggcgaaaacaggaagaccaaagagagagtagccccccaaaacaatgacatcctccaaagtgattgtt 24840258  T
Q  305 gcttcaccaaatagaaacacgaaggtgtttgtttcacaacaccatttctcaacaaccccacaaaccaagtcttggtttttaattatgcagctcttagtac 404  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24840259 gcttcaccaaatagaaacacgaaggtgtttgtttcacaacaccatttctcaacaaccccacaaaccaagtcttggtttttaattatgcagctcttagtac 24840358  T
Q  405 tcattat 411  Q
    |||||||    
T  24840359 tcattat 24840365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 46 - 411
Target Start/End: Complemental strand, 19943810 - 19943446
Alignment:
Q  46 gtatttatgagggaaaacaaaaattgacaaccaagtagcaagaaatgcttcatgctcaacttcactacctttatcgatgaaaatatccatccacactgat 145  Q
    |||| ||||||| ||||||||  ||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||    
T  19943810 gtatctatgaggaaaaacaaa--ttgacaaccaagtagcaagaaatgcttcatgttcaatttcactacctttatcgatgaaaatatccatccacactgat 19943713  T
Q  146 gtggaaggtgccatacctttcgaagtcctctcttggctttcaatgttgatgagcttctgttccacctctctcatctcttgatcttcaagctgggcgaaaa 245  Q
    |||||||| ||||||||||| ||| || ||||||||||||||||| ||||||||||||||||||||| ||| ||||| ||||||||||| |||| |||||    
T  19943712 gtggaaggggccataccttttgaaatcatctcttggctttcaatgctgatgagcttctgttccacctttctaatctcctgatcttcaagttgggtgaaaa 19943613  T
Q  246 -caggaagaccaaagagagagtagccccccaaaacaatgacatcctccaaagtgattgttgcttcaccaaatagaaacacgaaggtgtttgtttcacaac 344  Q
     ||||| |||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  19943612 acaggatgaccaaagagagagtatccccccaaaacaatgacatcttccaaagtgattgttgcttcaccaaatagaaacacaaaggtgtttgtttcacaac 19943513  T
Q  345 accatttctcaacaaccccacaaaccaagtcttggtttttaattatgcagctcttagtactcattat 411  Q
    ||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| ||||||||||    
T  19943512 accatttctcaacaatcccacaaaccaagtcttgatttttaattatgcagctcttaatactcattat 19943446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 129 - 386
Target Start/End: Original strand, 20005109 - 20005351
Alignment:
Q  129 tatccatccacactgatgtggaaggtgccatacctttcgaagtcctctcttggctttcaatgttgatgagcttctgttccacctctctcatctcttgatc 228  Q
    |||||| |||||| ||||||||| | ||||||||||| ||| |||||||||||||||||||||||| |||||||||||| |||||||||||||| |||||    
T  20005109 tatccacccacaccgatgtggaaagcgccataccttttgaaatcctctcttggctttcaatgttgacgagcttctgttcgacctctctcatctcctgatc 20005208  T
Q  229 ttcaagctgggcgaaaacaggaagaccaaagagagagtagccccccaaaacaatgacatcctccaaagtgattgttgcttcaccaaatagaaacacgaag 328  Q
    |||||| |||| ||||||||||               || |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||    
T  20005209 ttcaagttgggtgaaaacagga---------------taaccccccaaaacaatgacatcttccaaagtgattgttgcttcaccaaatagaaacacaaag 20005293  T
Q  329 gtgtttgtttcacaacaccatttctcaacaaccccacaaaccaagtcttggtttttaa 386  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||    
T  20005294 gtgtttgtttcacaacaccatttctcaacaatcccacaaaccaagtcttgatttttaa 20005351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 19 - 374
Target Start/End: Complemental strand, 19858191 - 19857834
Alignment:
Q  19 aggaaacaaagaacatttcactagagagtatttatgagggaaaacaaaaattgacaaccaagtagcaagaaatgcttcatgctcaacttcactaccttta 118  Q
    |||||||||||| | ||||||   | ||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  19858191 aggaaacaaagatcttttcacattaaagtatctattaggaaaaacaaaaattgacaaccaagtagcaagaaatgcttcatgctcaatttcactaccttta 19858092  T
Q  119 tcgatgaaaatatccatccacactgatgtggaaggtg-ccatacctttcgaagtcctctcttggctttcaatgttgatgagcttctgttccacctctctc 217  Q
    ||||||||||||||||||||||||| |||||||||||   |||| |||   | ||||||| |   |||||||||||||||||||||||||||| |||  |    
T  19858091 tcgatgaaaatatccatccacactgttgtggaaggtgaaaatacttttgataatcctctcctttgtttcaatgttgatgagcttctgttccacatcttgc 19857992  T
Q  218 atctcttgatcttcaagctgggcgaaaacaggaagaccaaagagagagtagccccccaaaacaatgacatcctccaaagtgattgttgcttcaccaaata 317  Q
    || || |||||||| ||  |   ||||||||||  ||||||||||||||| ||||||||||| |  |||||||| | ||| |||||||||||||||||      
T  19857991 atttcctgatcttcgagtggtttgaaaacaggatcaccaaagagagagtaaccccccaaaaccacaacatcctctatagtaattgttgcttcaccaaagg 19857892  T
Q  318 gaaacacgaaggtgtt-tgtttcacaacaccatttctcaacaaccccacaaaccaagt 374  Q
    |||||||||| || ||  || ||| |||||||||| |||||||||||| |||||||||    
T  19857891 gaaacacgaatgtattgggtctcagaacaccatttgtcaacaaccccataaaccaagt 19857834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 19 - 408
Target Start/End: Complemental strand, 19853631 - 19853242
Alignment:
Q  19 aggaaacaaagaacatttcactagagagtatttatgagggaaaacaaaaattgacaaccaagtagcaagaaatgcttcatgctcaacttcactaccttta 118  Q
    |||||||||||| | |||||| | | ||||| ||||||| ||||||||||| ||||||||||||||||||||||||||||| |||| |||||||||||||    
T  19853631 aggaaacaaagatcttttcacaataaagtatctatgaggaaaaacaaaaatagacaaccaagtagcaagaaatgcttcatgttcaatttcactaccttta 19853532  T
Q  119 tcgatgaaaatatccatccacactgatgtggaaggtgccatacctttcgaagtcctctcttggctttcaatgttgatgagcttctgttccacctctctca 218  Q
     | | ||||| |  ||||||||| ||||||||||||| ||||  |||   |  |||||| |    ||||||||||||||||||||| |||| |||| |||    
T  19853531 ccaaagaaaaaagtcatccacacagatgtggaaggtggcatagttttgataaccctctccttttcttcaatgttgatgagcttctgctccaactctttca 19853432  T
Q  219 -tctcttgatcttcaagctgggcgaaaacaggaagaccaaagagagagtagccccccaaaacaatgacatcctccaaagtgattgttgcttcaccaaata 317  Q
     |||| |||||||||||      ||||| ||||  ||||| || || ||| ||||||||||| || |||||||||||||| ||||||||||||||||||     
T  19853431 ttctc-tgatcttcaagtgatttgaaaataggatcaccaatgatagggtaaccccccaaaaccataacatcctccaaagttattgttgcttcaccaaatg 19853333  T
Q  318 gaaacacgaaggtgtttgtttcacaacaccatttctcaacaaccccacaaaccaagtcttggtttttaattatgcagctcttagtactcat 408  Q
    | ||||| || || || || ||| |||||||||| |||||||||||||| | ||||| ||| | |||  ||||||||||||||||||||||    
T  19853332 ggaacacaaatgtattggtctcagaacaccatttgtcaacaaccccacataacaagttttgatctttctttatgcagctcttagtactcat 19853242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 212 - 411
Target Start/End: Complemental strand, 26651959 - 26651760
Alignment:
Q  212 tctctcatctcttgatcttcaagctgggcgaaaacaggaagaccaaagagagagtagccccccaaaacaatgacatcctccaaagtgattgttgcttcac 311  Q
    |||||||||||  |||| ||||| ||||  |||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  26651959 tctctcatctccggatcatcaagttgggtaaaaacaggataaccaaagagagagtagccccccaaaacaatgacatcctccaaagtgattgttgcctcac 26651860  T
Q  312 caaatagaaacacgaaggtgtttgtttcacaacaccatttctcaacaaccccacaaaccaagtcttggtttttaattatgcagctcttagtactcattat 411  Q
    ||||  |||| || |||   ||||| |||| |||||||||||||  || |||| ||||||||||||| ||||| |||| || ||||||||||||||||||    
T  26651859 caaaaggaaaaacaaagcaatttgtctcactacaccatttctcagaaatcccataaaccaagtcttgatttttcattacgcggctcttagtactcattat 26651760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 5 - 147
Target Start/End: Complemental strand, 19956217 - 19956075
Alignment:
Q  5 agatggacatcaacaggaaacaaagaacatttcactagagagtatttatgagggaaaacaaaaattgacaaccaagtagcaagaaatgcttcatgctcaa 104  Q
    ||||| ||| ||| |||||||||| ||| ||||||   ||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||    
T  19956217 agatgaacaacaataggaaacaaataacttttcacggaagaatatttatgagggaaaacaaaaattgacaaccaagtagcaagaaaagcttcatgttcaa 19956118  T
Q  105 cttcactacctttatcgatgaaaatatccatccacactgatgt 147  Q
     ||||||||||||||| ||||||||||||||||| | ||||||    
T  19956117 tttcactacctttatcaatgaaaatatccatccatagtgatgt 19956075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 19 - 138
Target Start/End: Complemental strand, 19849109 - 19848990
Alignment:
Q  19 aggaaacaaagaacatttcactagagagtatttatgagggaaaacaaaaattgacaaccaagtagcaagaaatgcttcatgctcaacttcactaccttta 118  Q
    |||||||||||||| |||||| | | ||| ||||||||| |||||||||| |||||||||||||||||||||||||||||| |||| |||||||||||||    
T  19849109 aggaaacaaagaacttttcaccaaatagtttttatgaggaaaaacaaaaagtgacaaccaagtagcaagaaatgcttcatgttcaatttcactaccttta 19849010  T
Q  119 tcgatgaaaatatccatcca 138  Q
    || |||||||||||||||||    
T  19849009 tcaatgaaaatatccatcca 19848990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 19 - 138
Target Start/End: Original strand, 20036602 - 20036721
Alignment:
Q  19 aggaaacaaagaacatttcactagagagtatttatgagggaaaacaaaaattgacaaccaagtagcaagaaatgcttcatgctcaacttcactaccttta 118  Q
    |||||||||||||| |||||| | | ||| ||||||||| |||||||||| |||||||||||||||||||||||||||||| |||| |||||||||||||    
T  20036602 aggaaacaaagaacttttcaccaaatagtttttatgaggaaaaacaaaaagtgacaaccaagtagcaagaaatgcttcatgttcaatttcactaccttta 20036701  T
Q  119 tcgatgaaaatatccatcca 138  Q
    || |||||||||||||||||    
T  20036702 tcaatgaaaatatccatcca 20036721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 192 - 385
Target Start/End: Complemental strand, 19818503 - 19818310
Alignment:
Q  192 tgatgagcttctgttccacctctctcatctcttgatcttcaagctgggcgaaaacaggaagaccaaagagagagtagccccccaaaacaatgacatcctc 291  Q
    |||||||||||| ||| ||||||||||| |||||||||| ||  | |  ||||||||||  ||||| || ||  || ||||||||||| |||||||||||    
T  19818503 tgatgagcttcttttcaacctctctcatttcttgatctttaactttgatgaaaacaggatcaccaatgataggataaccccccaaaactatgacatcctc 19818404  T
Q  292 caaagtgattgttgcttcaccaaatagaaacacgaaggtgtttgtttcacaacaccatttctcaacaaccccacaaaccaagtcttggttttta 385  Q
    ||||||||| ||||| ||||||||| |||| || |||||||| || ||||||||||||||||||||||||||| | | ||||| ||| ||||||    
T  19818403 caaagtgatagttgcctcaccaaatggaaaaacaaaggtgttagtctcacaacaccatttctcaacaaccccaaatagcaagttttgattttta 19818310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 20 - 148
Target Start/End: Original strand, 20016201 - 20016329
Alignment:
Q  20 ggaaacaaagaacatttcactagagagtatttatgagggaaaacaaaaattgacaaccaagtagcaagaaatgcttcatgctcaacttcactacctttat 119  Q
    ||||||||| ||| ||||||   |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| ||||||||||||||    
T  20016201 ggaaacaaacaacttttcacggaagagtatttatgagggaaaacaaaaattgacagccaagtagcaagaaatgcttcatgttcaatttcactacctttat 20016300  T
Q  120 cgatgaaaatatccatccacactgatgtg 148  Q
    |   ||| ||||||||||||| |||||||    
T  20016301 cagcgaacatatccatccacattgatgtg 20016329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 193 - 364
Target Start/End: Complemental strand, 19812225 - 19812054
Alignment:
Q  193 gatgagcttctgttccacctctctcatctcttgatcttcaagctgggcgaaaacaggaagaccaaagagagagtagccccccaaaacaatgacatcctcc 292  Q
    ||||||||||| ||||||||||||||| ||||| |||| ||  | ||  |||| ||||  ||||| || || ||| ||||||||||| || | |||||||    
T  19812225 gatgagcttcttttccacctctctcatttcttggtcttgaactttggtaaaaataggatcaccaatgatagggtaaccccccaaaaccataatatcctcc 19812126  T
Q  293 aaagtgattgttgcttcaccaaatagaaacacgaaggtgtttgtttcacaacaccatttctcaacaacccca 364  Q
    |||||||| ||||||||||||||| |||| || |||||||| || |||||||||||||||||||||||||||    
T  19812125 aaagtgatagttgcttcaccaaatggaaaaacaaaggtgttagtctcacaacaccatttctcaacaacccca 19812054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 205 - 360
Target Start/End: Complemental strand, 19956008 - 19955853
Alignment:
Q  205 ttccacctctctcatctcttgatcttcaagctgggcgaaaacaggaagaccaaagagagagtagccccccaaaacaatgacatcctccaaagtgattgtt 304  Q
    ||||||||||||||| ||||| ||||  |  | || |||||||| |  ||||| || || ||| ||||||||||| |||||||| |||||||||||||||    
T  19956008 ttccacctctctcatttcttggtctttgacttcggtgaaaacagaatcaccaatgacagggtaaccccccaaaaccatgacatcttccaaagtgattgtt 19955909  T
Q  305 gcttcaccaaatagaaacacgaaggtgtttgtttcacaacaccatttctcaacaac 360  Q
    || ||||||||| ||||||| || || ||||| |||||||||||||||||||||||    
T  19955908 gcctcaccaaatggaaacacaaatgtatttgtctcacaacaccatttctcaacaac 19955853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 47 - 131
Target Start/End: Complemental strand, 19812371 - 19812287
Alignment:
Q  47 tatttatgagggaaaacaaaaattgacaaccaagtagcaagaaatgcttcatgctcaacttcactacctttatcgatgaaaatat 131  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| | | ||||||||    
T  19812371 tatttatgaggaaaaacaaaaattgacaaccaagtagcaagaaatgcttcatgttcaatttcactacctttaccaacgaaaatat 19812287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 59 - 147
Target Start/End: Complemental strand, 19838472 - 19838384
Alignment:
Q  59 aaaacaaaaattgacaaccaagtagcaagaaatgcttcatgctcaacttcactacctttatcgatgaaaatatccatccacactgatgt 147  Q
    |||||||||||||||||||||||||| ||||| |||||||| |||| ||| ||||||||||||||||||||||||||||| | ||||||    
T  19838472 aaaacaaaaattgacaaccaagtagctagaaaagcttcatgttcaatttcgctacctttatcgatgaaaatatccatccatagtgatgt 19838384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 49 - 148
Target Start/End: Complemental strand, 20046212 - 20046113
Alignment:
Q  49 tttatgagggaaaacaaaaattgacaaccaagtagcaagaaatgcttcatgctcaacttcactacctttatcgatgaaaatatccatccacactgatgtg 148  Q
    ||||||||| ||||||||||||||||||||||||| ||| || ||||| || |||| ||||||||||||||||||||| ||||||||||| | |||||||    
T  20046212 tttatgaggaaaaacaaaaattgacaaccaagtagtaaggaaggcttcgtgttcaatttcactacctttatcgatgaacatatccatccataatgatgtg 20046113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 61 - 138
Target Start/End: Complemental strand, 19989599 - 19989522
Alignment:
Q  61 aacaaaaattgacaaccaagtagcaagaaatgcttcatgctcaacttcactacctttatcgatgaaaatatccatcca 138  Q
    ||||||||||||||||||||||||||||||||||||||| |||| |||| |||||||||| ||||||| |||||||||    
T  19989599 aacaaaaattgacaaccaagtagcaagaaatgcttcatgttcaagttcattacctttatcaatgaaaacatccatcca 19989522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 205 - 360
Target Start/End: Complemental strand, 19838317 - 19838162
Alignment:
Q  205 ttccacctctctcatctcttgatcttcaagctgggcgaaaacaggaagaccaaagagagagtagccccccaaaacaatgacatcctccaaagtgattgtt 304  Q
    ||||||||||||||| ||||| ||||  |  | || |||||||| |  ||||| || || ||| ||||||||||| |||||||| |||||||||||||||    
T  19838317 ttccacctctctcatttcttggtctttgacttcggtgaaaacagaatcaccaatgacagggtaaccccccaaaaccatgacatcttccaaagtgattgtt 19838218  T
Q  305 gcttcaccaaatagaaacacgaaggtgtttgtttcacaacaccatttctcaacaac 360  Q
    || ||||||||| ||||||| || || || || ||||| |||||||||||||||||    
T  19838217 gcctcaccaaatggaaacacaaatgtattggtctcacagcaccatttctcaacaac 19838162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 53 - 130
Target Start/End: Complemental strand, 30914728 - 30914651
Alignment:
Q  53 tgagggaaaacaaaaattgacaaccaagtagcaagaaatgcttcatgctcaacttcactacctttatcgatgaaaata 130  Q
    ||||||||||||||||||||||||||||||| ||| ||||||||||| |||| ||||||| ||||||| |||||||||    
T  30914728 tgagggaaaacaaaaattgacaaccaagtagtaaggaatgcttcatgttcaatttcactaactttatcaatgaaaata 30914651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 269 - 364
Target Start/End: Complemental strand, 19989391 - 19989296
Alignment:
Q  269 ccccccaaaacaatgacatcctccaaagtgattgttgcttcaccaaatagaaacacgaaggtgtttgtttcacaacaccatttctcaacaacccca 364  Q
    ||||| ||||| || ||||| ||||||||||| ||||| ||||||||| |||| || || |||||||| |||||||||||||||||||||||||||    
T  19989391 ccccctaaaaccataacatcttccaaagtgatagttgcctcaccaaatggaaaaacaaatgtgtttgtctcacaacaccatttctcaacaacccca 19989296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 192 - 374
Target Start/End: Complemental strand, 19951070 - 19950888
Alignment:
Q  192 tgatgagcttctgttccacctctctcatctcttgatcttcaagctgggcgaaaacaggaagaccaaagagagagtagccccccaaaacaatgacatcctc 291  Q
    |||||||||| | ||| |||||| |||| |||||||||| |||      ||||||||||  |||||  | || ||| ||||||||||| || ||||||||    
T  19951070 tgatgagcttttcttcaacctctttcatttcttgatcttgaagtgtaatgaaaacaggatcaccaagaacagggtaaccccccaaaaccataacatcctc 19950971  T
Q  292 caaagtgattgttgcttcaccaaatagaaacacgaaggtgtttgtttcacaacaccatttctcaacaaccccacaaaccaagt 374  Q
    ||||||||| ||||| ||||||||| ||||||| || || || || |||  |||||||||||||||||||||| ||| |||||    
T  19950970 caaagtgatagttgcctcaccaaatggaaacacaaatgtattggtctcagtacaccatttctcaacaaccccaaaaagcaagt 19950888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 50 - 138
Target Start/End: Complemental strand, 19951212 - 19951124
Alignment:
Q  50 ttatgagggaaaacaaaaattgacaaccaagtagcaagaaatgcttcatgctcaacttcactacctttatcgatgaaaatatccatcca 138  Q
    |||| ||| |||||||||| ||||||||||||| |||| || |||||||| |||| |||||||||||||||  ||||||||||||||||    
T  19951212 ttattaggaaaaacaaaaagtgacaaccaagtaacaaggaaggcttcatgttcaatttcactacctttatcagtgaaaatatccatcca 19951124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 269 - 385
Target Start/End: Complemental strand, 26646879 - 26646763
Alignment:
Q  269 ccccccaaaacaatgacatcctccaaagtgattgttgcttcaccaaatagaaacacgaaggtgtttgtttcacaacaccatttctcaacaaccccacaaa 368  Q
    ||||||||||| |||| |||||||||||| || ||||||||||||||   || ||| ||||| ||||| |||||||||||||||||||| |||||| | |    
T  26646879 ccccccaaaaccatgatatcctccaaagtaatagttgcttcaccaaaggcaatcacaaaggtatttgtctcacaacaccatttctcaactaccccatata 26646780  T
Q  369 ccaagtcttggttttta 385  Q
     |||||| || ||||||    
T  26646779 gcaagtcatgattttta 26646763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 52 - 138
Target Start/End: Complemental strand, 26647090 - 26647004
Alignment:
Q  52 atgagggaaaacaaaaattgacaaccaagtagcaagaaatgcttcatgctcaacttcactacctttatcgatgaaaatatccatcca 138  Q
    |||||| |||||| ||| |||||||||||||| ||| ||||||||||| |||| ||||||||||||||| |||||| |||| |||||    
T  26647090 atgaggaaaaacataaactgacaaccaagtagaaaggaatgcttcatgttcaatttcactacctttatccatgaaactatcgatcca 26647004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 50 - 138
Target Start/End: Complemental strand, 19818645 - 19818557
Alignment:
Q  50 ttatgagggaaaacaaaaattgacaaccaagtagcaagaaatgcttcatgctcaacttcactacctttatcgatgaaaatatccatcca 138  Q
    |||||||| |||||||||||||| ||||||||||||||||| |||||||| |||| |||  |||||||| | || ||||| ||||||||    
T  19818645 ttatgaggaaaaacaaaaattgataaccaagtagcaagaaaagcttcatgttcaatttcggtacctttaccaataaaaatttccatcca 19818557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 51 - 135
Target Start/End: Complemental strand, 26653239 - 26653155
Alignment:
Q  51 tatgagggaaaacaaaaattgacaaccaagtagcaagaaatgcttcatgctcaacttcactacctttatcgatgaaaatatccat 135  Q
    ||||||| ||||||||||||||||||||||  ||||| ||||| ||||| |||| |||||||||||  || ||||||||||||||    
T  26653239 tatgaggaaaaacaaaaattgacaaccaagctgcaaggaatgcatcatgttcaatttcactaccttagtcaatgaaaatatccat 26653155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 281 - 364
Target Start/End: Complemental strand, 19848844 - 19848761
Alignment:
Q  281 atgacatcctccaaagtgattgttgcttcaccaaatagaaacacgaaggtgtttgtttcacaacaccatttctcaacaacccca 364  Q
    |||| ||||||||||||||||||||||||||||||   |||||| ||||| ||||| | |  ||||||||||||||| ||||||    
T  19848844 atgatatcctccaaagtgattgttgcttcaccaaaggaaaacacaaaggtatttgtattaggacaccatttctcaactacccca 19848761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 205 - 363
Target Start/End: Complemental strand, 20046056 - 20045898
Alignment:
Q  205 ttccacctctctcatctcttgatcttcaagctgggcgaaaacaggaagaccaaagagagagtagccccccaaaacaatgacatcctccaaagtgattgtt 304  Q
    ||||||||||||||| ||||| |||| ||  | || ||||||| ||   |||| || || ||| || ||||||||||||| ||||||||| || ||||||    
T  20046056 ttccacctctctcatttcttggtctttaactttggtgaaaacatgatcgccaatgatagggtaacctcccaaaacaatgatatcctccaaggttattgtt 20045957  T
Q  305 gcttcaccaaatagaaacacgaaggtgtttgtttcacaacaccatttctcaacaacccc 363  Q
    |  ||||||||  |||| |  || || ||||| ||||||||||||||||| ||||||||    
T  20045956 gtctcaccaaagggaaaaataaatgtatttgtatcacaacaccatttctccacaacccc 20045898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 272 - 354
Target Start/End: Original strand, 20016451 - 20016533
Alignment:
Q  272 cccaaaacaatgacatcctccaaagtgattgttgcttcaccaaatagaaacacgaaggtgtttgtttcacaacaccatttctc 354  Q
    |||||||| || | |||||||||||||||||| |||||| ||||| ||||||| || || ||||| | | |||||||||||||    
T  20016451 cccaaaaccataatatcctccaaagtgattgtagcttcagcaaatggaaacacaaatgtatttgtcttagaacaccatttctc 20016533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 72
Target Start/End: Complemental strand, 19971730 - 19971677
Alignment:
Q  19 aggaaacaaagaacatttcactagagagtatttatgagggaaaacaaaaattga 72  Q
    |||||||||||||| |||||||| | ||||| ||||||  ||||||||||||||    
T  19971730 aggaaacaaagaacttttcactataaagtatctatgagaaaaaacaaaaattga 19971677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 67; Significance: 1e-29; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 49 - 139
Target Start/End: Original strand, 22689684 - 22689774
Alignment:
Q  49 tttatgagggaaaacaaaaattgacaaccaagtagcaagaaatgcttcatgctcaacttcactacctttatcgatgaaaatatccatccac 139  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |||| |||| ||||||||||||| ||||||||||    
T  22689684 tttatgaggaaaaacaaaaattgacaaccaagtagcaagaaatgcttcatgttcaaattcattaccattatcgatgaaaacatccatccac 22689774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 45 - 138
Target Start/End: Original strand, 22652113 - 22652206
Alignment:
Q  45 agtatttatgagggaaaacaaaaattgacaaccaagtagcaagaaatgcttcatgctcaacttcactacctttatcgatgaaaatatccatcca 138  Q
    ||||| ||||||  ||||||||||||||||||||||||||||| || |||||||| |||| |||||||||||||||||||||||||||||||||    
T  22652113 agtatctatgagcaaaaacaaaaattgacaaccaagtagcaaggaacgcttcatgttcaatttcactacctttatcgatgaaaatatccatcca 22652206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 49 - 118
Target Start/End: Original strand, 22685709 - 22685778
Alignment:
Q  49 tttatgagggaaaacaaaaattgacaaccaagtagcaagaaatgcttcatgctcaacttcactaccttta 118  Q
    ||||||||| |||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||    
T  22685709 tttatgaggaaaaacaaaaagtgacaaccaagcagcaagaaatgcttcatgctcaatttcactaccttta 22685778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 199 - 364
Target Start/End: Original strand, 22652267 - 22652432
Alignment:
Q  199 cttctgttccacctctctcatctcttgatcttcaagctgggcgaaaacaggaagaccaaagagagagtagccccccaaaacaatgacatcctccaaagtg 298  Q
    ||||| ||||||||||||||||| || |||||||||   |  ||||||||||  |||||  | || ||| ||| | ||||  || ||||| || || |||    
T  22652267 cttcttttccacctctctcatcttttcatcttcaagtgagatgaaaacaggatcaccaagaacagggtaaccctctaaaatcataacatcttctaaggtg 22652366  T
Q  299 attgttgcttcaccaaatagaaacacgaaggtgtttgtttcacaacaccatttctcaacaacccca 364  Q
    || ||||| ||||||||| ||||||| || | |||||| ||||| |||||||||||||||||||||    
T  22652367 atagttgcctcaccaaatggaaacacaaatgagtttgtctcacagcaccatttctcaacaacccca 22652432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 59; Significance: 7e-25; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 199 - 411
Target Start/End: Original strand, 34408266 - 34408479
Alignment:
Q  199 cttctgttccacctctctcatctcttgatcttcaagctgggc-gaaaacaggaagaccaaagagagagtagccccccaaaacaatgacatcctccaaagt 297  Q
    ||||||||||||||||| ||| |||||||||||||| || || ||||||||||   | |||| ||||||| ||| ||||||| || ||||| ||||||||    
T  34408266 cttctgttccacctctcccatttcttgatcttcaag-tgtgctgaaaacaggatctcgaaagtgagagtatccctccaaaaccatcacatcatccaaagt 34408364  T
Q  298 gattgttgcttcacc-aaatagaaacacgaaggtgtttgtttcacaacaccatttctcaacaaccccacaaaccaagtcttggtttttaattatgcagct 396  Q
    ||||||| | ||||| ||| | |||||| ||||| ||||| ||||||||| ||| ||| |||| || | || | |||||||| |||||  ||||||| ||    
T  34408365 gattgttccatcacctaaagaaaaacacaaaggtatttgtctcacaacactattactcgacaatcctataatcgaagtcttgatttttctttatgcaact 34408464  T
Q  397 cttagtactcattat 411  Q
    || ||||||||||||    
T  34408465 ctaagtactcattat 34408479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 4e-20; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 48 - 138
Target Start/End: Complemental strand, 9815127 - 9815037
Alignment:
Q  48 atttatgagggaaaacaaaaattgacaaccaagtagcaagaaatgcttcatgctcaacttcactacctttatcgatgaaaatatccatcca 138  Q
    |||||||||  |||||||| ||||||||||| |||||||  || ||||||||||||| |||||||||||| |||||||||| |||||||||    
T  9815127 atttatgagttaaaacaaagattgacaaccacgtagcaatgaacgcttcatgctcaatttcactacctttgtcgatgaaaaaatccatcca 9815037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 59 - 138
Target Start/End: Original strand, 26354966 - 26355045
Alignment:
Q  59 aaaacaaaaattgacaaccaagtagcaagaaatgcttcatgctcaacttcactacctttatcgatgaaaatatccatcca 138  Q
    |||||||||||||| ||||||| | |||  ||||||||||| |||||||||||||||||||| ||||||| |||||||||    
T  26354966 aaaacaaaaattgataaccaagcaacaatgaatgcttcatgttcaacttcactacctttatccatgaaaacatccatcca 26355045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 269 - 411
Target Start/End: Complemental strand, 9814906 - 9814764
Alignment:
Q  269 ccccccaaaacaatgacatcctccaaagtgattgttgcttcaccaaatagaaacacgaaggtgtttgtttcacaacaccatttctcaacaaccccacaaa 368  Q
    ||||||||||| || |||||||||||| | || || || ||||||||  ||||||| || || || || | ||||||||||||||||||||||||| | |    
T  9814906 ccccccaaaaccataacatcctccaaactaatcgtcgcctcaccaaacggaaacacaaatgtattcgtcttacaacaccatttctcaacaaccccatata 9814807  T
Q  369 ccaagtcttggtttttaattatgcagctcttagtactcattat 411  Q
     ||||| ||| | ||| ||||||| || ||| |||||||||||    
T  9814806 gcaagttttgatctttcattatgcggcacttggtactcattat 9814764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 270 - 411
Target Start/End: Original strand, 38435381 - 38435522
Alignment:
Q  270 cccccaaaacaatgacatcctccaaagtgattgttgcttcaccaaatagaaacacgaaggtgtttgtttcacaacaccatttctcaacaaccccacaaac 369  Q
    |||||||||| |||| ||| || ||||||||||||||| |||||| | ||||||| || || || || | ||||||||||||||||||||||| | | |     
T  38435381 cccccaaaaccatgatatcttcaaaagtgattgttgctacaccaagtggaaacacaaatgtattggtcttacaacaccatttctcaacaaccctaaataa 38435480  T
Q  370 caagtcttggtttttaattatgcagctcttagtactcattat 411  Q
    |||||  || ||||||  |||| |||  ||||||||||||||    
T  38435481 caagttatgatttttatgtatgtagcatttagtactcattat 38435522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 49 - 138
Target Start/End: Original strand, 6397767 - 6397856
Alignment:
Q  49 tttatgagggaaaacaaaaattgacaaccaagtagcaagaaatgcttcatgctcaacttcactacctttatcgatgaaaatatccatcca 138  Q
    |||| |||| ||| || ||||||||||||| |||||||| || |||||||| |||| ||||||||||||||||||||| |||||||||||    
T  6397767 tttaggaggaaaagcacaaattgacaaccaggtagcaaggaaggcttcatgttcaatttcactacctttatcgatgaacatatccatcca 6397856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 59 - 138
Target Start/End: Complemental strand, 6398340 - 6398261
Alignment:
Q  59 aaaacaaaaattgacaaccaagtagcaagaaatgcttcatgctcaacttcactacctttatcgatgaaaatatccatcca 138  Q
    |||||||||||| |||||||| ||||||| || |||||||| |||| |||||||||||||| ||| || |||||||||||    
T  6398340 aaaacaaaaattaacaaccaattagcaaggaaggcttcatgttcaatttcactacctttatagataaacatatccatcca 6398261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 265 - 315
Target Start/End: Original strand, 6397983 - 6398033
Alignment:
Q  265 gtagccccccaaaacaatgacatcctccaaagtgattgttgcttcaccaaa 315  Q
    |||| ||||||| ||||||| |||||||||||| |||||||| ||||||||    
T  6397983 gtagacccccaagacaatgatatcctccaaagttattgttgcctcaccaaa 6398033  T

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Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 49 - 138
Target Start/End: Complemental strand, 1717303 - 1717214
Alignment:
Q  49 tttatgagggaaaacaaaaattgacaaccaagtagcaagaaatgcttcatgctcaacttcactacctttatcgatgaaaatatccatcca 138  Q
    ||||||||| |||||| |||  ||||||||||||||||||||||||||||| |||| ||||||||||||||| |  |||| |||||||||    
T  1717303 tttatgaggaaaaacataaaccgacaaccaagtagcaagaaatgcttcatgttcaatttcactacctttatcaacaaaaacatccatcca 1717214  T

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Target: chr1; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 211 - 364
Target Start/End: Complemental strand, 1717141 - 1716988
Alignment:
Q  211 ctctctcatctcttgatcttcaagctgggcgaaaacaggaagaccaaagagagagtagccccccaaaacaatgacatcctccaaagtgattgttgcttca 310  Q
    |||| |||| ||||| |||||||||    |||||||||||  ||||| || || |||  |||| ||||| || | |||||||||||||||||| ||||||    
T  1717141 ctctttcatttcttggtcttcaagcgaaacgaaaacaggatcaccaatgacagggtaatcccctaaaaccataatatcctccaaagtgattgtggcttca 1717042  T
Q  311 ccaaatagaaacacgaaggtgtttgtttcacaacaccatttctcaacaacccca 364  Q
    |||||  ||||||| || || ||||| |||||||||||||| ||||||| ||||    
T  1717041 ccaaaaggaaacacaaatgtatttgtctcacaacaccatttttcaacaatccca 1716988  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 54 - 104
Target Start/End: Complemental strand, 12581476 - 12581426
Alignment:
Q  54 gagggaaaacaaaaattgacaaccaagtagcaagaaatgcttcatgctcaa 104  Q
    |||| ||||||||||||||||||||||||||||| || |||||||| ||||    
T  12581476 gaggaaaaacaaaaattgacaaccaagtagcaaggaaggcttcatgttcaa 12581426  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 51 - 104
Target Start/End: Complemental strand, 12497296 - 12497243
Alignment:
Q  51 tatgagggaaaacaaaaattgacaaccaagtagcaagaaatgcttcatgctcaa 104  Q
    ||||||| |||||||||||||||||||| |||||||| || |||||||| ||||    
T  12497296 tatgaggaaaaacaaaaattgacaaccaggtagcaaggaaggcttcatgttcaa 12497243  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 51 - 104
Target Start/End: Complemental strand, 12521161 - 12521108
Alignment:
Q  51 tatgagggaaaacaaaaattgacaaccaagtagcaagaaatgcttcatgctcaa 104  Q
    ||||||| |||||||||||||||||||| |||||||| || |||||||| ||||    
T  12521161 tatgaggaaaaacaaaaattgacaaccaggtagcaaggaaggcttcatgttcaa 12521108  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 82
Target Start/End: Original strand, 12580110 - 12580143
Alignment:
Q  49 tttatgagggaaaacaaaaattgacaaccaagta 82  Q
    ||||||||| ||||||||||||||||||||||||    
T  12580110 tttatgaggaaaaacaaaaattgacaaccaagta 12580143  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 49 - 81
Target Start/End: Original strand, 12519821 - 12519853
Alignment:
Q  49 tttatgagggaaaacaaaaattgacaaccaagt 81  Q
    ||||||||| |||||||||||||||||||||||    
T  12519821 tttatgaggaaaaacaaaaattgacaaccaagt 12519853  T

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