View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9190_low_11 (Length: 209)
Name: NF9190_low_11
Description: NF9190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9190_low_11 |
 | |
|
| [»] chr3 (2 HSPs) |
| |
|
| [»] chr4 (2 HSPs) |
| |
|
| [»] scaffold0306 (1 HSPs) |
| |
|
| [»] scaffold0152 (1 HSPs) |
| |
|
| [»] chr1 (1 HSPs) |
| |
|
| [»] scaffold0168 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 24633985 - 24633777
Alignment:
| Q |
1 |
tgcaatcaatgtatacgtctttttgcatattctgtcattcctctgatatattgaatatgattcttctttctatctttcttttcttcacttgttatatact |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24633985 |
tgcaatcaatgtatacgtctttttgcatattctgtcattcctctgatatattgaatatgattcttctttctatctttcttttcttcacttgttatatact |
24633886 |
T |
|
| Q |
101 |
atgagtcctatgaagtacggatactcctcgaattaggcgtgtcactatgtgacacggacaccacactggcaatcataattgcaccgaattatgtgatttt |
200 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
24633885 |
atgagtcctatgaagcacggatactcctcgaattaggtgtgtcactatgtgacacggacaccacactgacaatcataattgcaccgaattatgtgatttt |
24633786 |
T |
|
| Q |
201 |
ctcaaatta |
209 |
Q |
| |
|
||||||||| |
|
|
| T |
24633785 |
ctcaaatta |
24633777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 24646609 - 24646551
Alignment:
| Q |
1 |
tgcaatcaatgtata--cgtctttttgcatattctgtcattcctctgatatattgaata |
57 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
24646609 |
tgcaatcaatgtatatacgtctttttgcatattctgtcattcttctgatatattgaata |
24646551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 209
Target Start/End: Original strand, 18576051 - 18576085
Alignment:
| Q |
175 |
ataattgcaccgaattatgtgattttctcaaatta |
209 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||| |
|
|
| T |
18576051 |
ataattacaccgaattatgtgattttctcaaatta |
18576085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 143
Target Start/End: Original strand, 2625958 - 2625994
Alignment:
| Q |
107 |
cctatgaagtacggatactcctcgaattaggcgtgtc |
143 |
Q |
| |
|
||||||||| |||||||||||| |||||||||||||| |
|
|
| T |
2625958 |
cctatgaagcacggatactccttgaattaggcgtgtc |
2625994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0306 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0306
Description:
Target: scaffold0306; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 176 - 209
Target Start/End: Complemental strand, 13444 - 13411
Alignment:
| Q |
176 |
taattgcaccgaattatgtgattttctcaaatta |
209 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| |
|
|
| T |
13444 |
taattgcactgaattatgtgattttctcaaatta |
13411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0152 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0152
Description:
Target: scaffold0152; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 176 - 209
Target Start/End: Original strand, 21883 - 21916
Alignment:
| Q |
176 |
taattgcaccgaattatgtgattttctcaaatta |
209 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| |
|
|
| T |
21883 |
taattgcactgaattatgtgattttctcaaatta |
21916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 176 - 209
Target Start/End: Original strand, 10572604 - 10572637
Alignment:
| Q |
176 |
taattgcaccgaattatgtgattttctcaaatta |
209 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| |
|
|
| T |
10572604 |
taattacaccgaattatgtgattttctcaaatta |
10572637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0168 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0168
Description:
Target: scaffold0168; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 143
Target Start/End: Complemental strand, 21279 - 21243
Alignment:
| Q |
107 |
cctatgaagtacggatactcctcgaattaggcgtgtc |
143 |
Q |
| |
|
||||||||| |||||||||||||| |||||||||||| |
|
|
| T |
21279 |
cctatgaagcacggatactcctcggattaggcgtgtc |
21243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University