View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9190_low_2 (Length: 728)

Name: NF9190_low_2
Description: NF9190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9190_low_2
NF9190_low_2
[»] chr2 (2 HSPs)
chr2 (92-599)||(41572399-41572907)
chr2 (591-710)||(41572939-41573058)
[»] chr8 (4 HSPs)
chr8 (92-596)||(27753590-27754102)
chr8 (630-690)||(27753402-27753459)
chr8 (343-401)||(10909508-10909566)
chr8 (599-634)||(27753512-27753547)
[»] chr3 (2 HSPs)
chr3 (93-486)||(21941917-21942311)
chr3 (645-705)||(21942577-21942637)
[»] chr4 (4 HSPs)
chr4 (488-590)||(26728609-26728711)
chr4 (343-401)||(13725863-13725921)
chr4 (653-691)||(26728411-26728449)
chr4 (346-404)||(26728806-26728864)
[»] scaffold0018 (1 HSPs)
scaffold0018 (225-270)||(138683-138728)


Alignment Details
Target: chr2 (Bit Score: 473; Significance: 0; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 92 - 599
Target Start/End: Original strand, 41572399 - 41572907
Alignment:
Q  92 taatgaggctgccatatgcaaaactgcacaaaaccagcacaggtcaccgcaatatacacaggataccccagcctcaaacttgtttactgctaaaaccgct 191  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  41572399 taataaggctgccatatgcaaaactgcacaaaaccagcacaggtcaccgcaatatacacagcataccccagcctcaaacttgtttactgctaaaaccgct 41572498  T
Q  192 gaacacctcctcattaccgtaagaggcacgcttttggattccaactccactcgtagaacaaacacgccggcaccttcaaacggcaaagaatacatctcct 291  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||     
T  41572499 gaacacctcctcattaccgtaagaggcacgcttttggattccaactccactcgtagaacaaacacgccggcaccttcaaacggctaagaatacatctcca 41572598  T
Q  292 cgatataaccttcacagcctccaccgtaccctccacc-gacaaaccacatttttgaaaattcgatcatttctcaccctcaataaattccacactacggcg 390  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  41572599 cgatataaccttcacagcctccaccgtaccctccacctgacaaaccacatttttgaaaattcgatcatttctcaccctcaataaattccacactacggca 41572698  T
Q  391 tgccaaatcaaacggaatcccttacggatcttgttactccctgctgccacattccattccttccacagcagaaacatgttaaccggaagctccatagcca 490  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  41572699 tgccaaatcaaacggaatcccttacggatcttgttactccctgctgccacattccattcctcccacagcagaaacatgttaaccggaagctccatagcca 41572798  T
Q  491 cctcaacacgtcattccaaacctccatagcaaacacacattgaatgaacaagtgactcgccgactccggattcccctcacacaaaacacaattcaccgaa 590  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41572799 cctcaacacgccattccaaacctccatagcaaacacacattgaatgaacaagtgactcgccgactccggattcccctcacacaaaacacaattcaccgaa 41572898  T
Q  591 tcgtccgga 599  Q
    |||||||||    
T  41572899 tcgtccgga 41572907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 591 - 710
Target Start/End: Original strand, 41572939 - 41573058
Alignment:
Q  591 tcgtccggatcctgtcatgaaacaacttccaagaaaaggcaaccgagaccgtggtttccgctagcatcaacacctccaacttcttatacatagatttcac 690  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41572939 tcgtcgggatcctgtcatgaaacaacttccaagaaaaggcaaccgagaccgtggtttccgctagcatcaacacctccaacttcttatacatagatttcac 41573038  T
Q  691 catgaaaacccctttaccct 710  Q
    ||||||||||||||||||||    
T  41573039 catgaaaacccctttaccct 41573058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 311; Significance: 1e-175; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 92 - 596
Target Start/End: Complemental strand, 27754102 - 27753590
Alignment:
Q  92 taatgaggctgccatatgcaaaactgcacaaaaccagcacaggtcaccgcaatatacacaggataccccagcctcaaacttgtttactgctaaaaccgct 191  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |||||||||||||||||||||| |||||||||||||||    
T  27754102 taatgaggctgccatatgcaaaactgcacaaaaccagcacgggtcaccgcaatataaacagcataccccagcctcaaacttgtt-actgctaaaaccgct 27754004  T
Q  192 gaacacctcctcattaccgtaagaggcacgcttttggattccaactccactcgtagaacaaacacgccggcaccttcaaacggcaaagaatacatctcct 291  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||  |||||||     
T  27754003 gaacacctcctcattaccgtaagaggcacgcttttggattccaacttcactcgtagaacaaacacgccggcaccttcaaacggctaagaaaccatctcca 27753904  T
Q  292 cgatataaccttcacagcctccaccgtaccctcca-ccgacaaaccacatttttgaaaattcgatcatttctcaccctcaataaattccacactacggcg 390  Q
    ||| |||||||||||||||||||||||| |||||| |||| ||||| |||||||||||||||| ||||||||||||||| ||||||||||||||||||||    
T  27753903 cgacataaccttcacagcctccaccgtatcctccacccgataaaccgcatttttgaaaattcggtcatttctcaccctccataaattccacactacggcg 27753804  T
Q  391 tgccaaatcaaacggaatcccttacggatcttgttactccctgctgccacattccattccttccacagcagaaacatgttaaccggaagctccatag--- 487  Q
    ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||| ||||||||||||||  || | |||||||||||  |       
T  27753803 tgccaaatcaaccggaatcccttacggatcttattactccctgctgccacattccaatcctcccacagcagaaacaaattgatcggaagctccaaggtca 27753704  T
Q  488 ------ccacctcaacacgtcattccaaacctccatagcaaacacacattgaatgaacaagtgactcgccgactccggattcccctcacacaaaacacaa 581  Q
           ||||||| |||  |||||||  ||||| |||||||    ||||||||||| |||||||| ||||||||||||||||||||||||| |||||||    
T  27753703 tctctaacacctcagcaccccattccacccctccttagcaaaggagcattgaatgaa-aagtgacttgccgactccggattcccctcacacagaacacaa 27753605  T
Q  582 ttcaccgaatcgtcc 596  Q
    |||||||||||||||    
T  27753604 ttcaccgaatcgtcc 27753590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 630 - 690
Target Start/End: Complemental strand, 27753459 - 27753402
Alignment:
Q  630 caaccgagaccgtggtttccgctagcatcaacacctccaacttcttatacatagatttcac 690  Q
    ||||||||||||||||||||||||||| ||||   ||||||||||||||||||||||||||    
T  27753459 caaccgagaccgtggtttccgctagcaacaac---tccaacttcttatacatagatttcac 27753402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 343 - 401
Target Start/End: Original strand, 10909508 - 10909566
Alignment:
Q  343 ttgaaaattcgatcatttctcaccctcaataaattccacactacggcgtgccaaatcaa 401  Q
    ||||||||||||||||||||||||||| ||||| |||| ||  ||||||||||||||||    
T  10909508 ttgaaaattcgatcatttctcaccctccataaactccaaaccgcggcgtgccaaatcaa 10909566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 599 - 634
Target Start/End: Complemental strand, 27753547 - 27753512
Alignment:
Q  599 atcctgtcatgaaacaacttccaagaaaaggcaacc 634  Q
    |||||||||||||||||||||||||||||| |||||    
T  27753547 atcctgtcatgaaacaacttccaagaaaagacaacc 27753512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 78; Significance: 6e-36; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 93 - 486
Target Start/End: Original strand, 21941917 - 21942311
Alignment:
Q  93 aatgaggctgccatatgcaaaactgcacaaaaccagcacaggtcaccgcaatata-cacaggataccccagcctcaaacttgtttactgctaaaaccgct 191  Q
    |||||||||||||||| | |  ||||||||| |||||||| ||||||||||| || ||| | ||||||||||||||| |||||   |||| ||||| ||     
T  21941917 aatgaggctgccatataccatcctgcacaaa-ccagcacatgtcaccgcaatttaacacggcataccccagcctcaatcttgtag-ctgcgaaaactgca 21942014  T
Q  192 gaacacctcctca-ttaccgtaagaggcacgcttttggattccaactccactcgtagaacaaacacgccggcaccttcaaacggca-aagaatacatctc 289  Q
    ||  | | | ||  |||| ||||||| || |||||||||||||||| |||||||||||||||||||| ||||| ||| |||||||  |||||  ||||||    
T  21942015 gagaaacccgtccgttactgtaagagacatgcttttggattccaacaccactcgtagaacaaacacgtcggcatctttaaacggctcaagaac-catctc 21942113  T
Q  290 ctcgatataaccttcacagcctccaccgtaccctccaccg-acaaaccacatttttgaaaattcgatcatttctcaccctcaataaattccacactacgg 388  Q
    | ||| || |||||||| |||||||||||| ||| ||||  ||||||  |||||||||||||  ||||||||||||||||| | | ||| ||||| ||||    
T  21942114 cacgacattaccttcactgcctccaccgtatccttcaccccacaaactgcatttttgaaaataagatcatttctcaccctccaaagatttcacacgacgg 21942213  T
Q  389 cgtgccaaatcaaacggaatcccttacggatcttgttactccctgctgccacattccattccttccacagcagaaacatgttaaccggaagctccata 486  Q
    | ||||||| ||| ||||| ||||| || |||   ||| | || ||||||||||||||  ||| |||||||| |||||  || | | |||||||||||    
T  21942214 catgccaaaccaaccggaagcccttgcgaatcccattattacccgctgccacattccagacctcccacagcacaaacaaatttaacagaagctccata 21942311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 645 - 705
Target Start/End: Original strand, 21942577 - 21942637
Alignment:
Q  645 tttccgctagcatcaacacctccaacttcttatacatagatttcaccatgaaaaccccttt 705  Q
    ||||| ||| ||||||||||||||||||||||||||| ||||| ||| | |||||||||||    
T  21942577 tttcctctaacatcaacacctccaacttcttatacattgatttaaccgtaaaaaccccttt 21942637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 488 - 590
Target Start/End: Complemental strand, 26728711 - 26728609
Alignment:
Q  488 ccacctcaacacgtcattccaaacctccatagcaaacacacattgaatgaacaagtgactcgccgactccggattcccctcacacaaaacacaattcacc 587  Q
    ||||||| ||||| | ||||| |||||||||||||||  ||| ||||||||||| ||| || | ||||| | |||||||||||||||||||||  |||||    
T  26728711 ccacctccacacgcctttccacacctccatagcaaacttacaatgaatgaacaaatgattcacggactctgcattcccctcacacaaaacacagctcacc 26728612  T
Q  588 gaa 590  Q
    |||    
T  26728611 gaa 26728609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 343 - 401
Target Start/End: Complemental strand, 13725921 - 13725863
Alignment:
Q  343 ttgaaaattcgatcatttctcaccctcaataaattccacactacggcgtgccaaatcaa 401  Q
    ||||||||||||||||||||| ||||| ||||| |||| ||  ||||||||||||||||    
T  13725921 ttgaaaattcgatcatttctcgccctccataaactccaaaccgcggcgtgccaaatcaa 13725863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 653 - 691
Target Start/End: Complemental strand, 26728449 - 26728411
Alignment:
Q  653 agcatcaacacctccaacttcttatacatagatttcacc 691  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  26728449 agcatcaacacctccaacttcttgtacatagatttcacc 26728411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 346 - 404
Target Start/End: Complemental strand, 26728864 - 26728806
Alignment:
Q  346 aaaattcgatcatttctcaccctcaataaattccacactacggcgtgccaaatcaaacg 404  Q
    |||||||| ||||||||| ||||| ||| | ||||||| ||||| ||||||||||||||    
T  26728864 aaaattcgctcatttctcgccctccatatactccacaccacggcatgccaaatcaaacg 26728806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 225 - 270
Target Start/End: Complemental strand, 138728 - 138683
Alignment:
Q  225 ttggattccaactccactcgtagaacaaacacgccggcaccttcaa 270  Q
    |||| ||||||||||||||||| |||||||| |||||||| |||||    
T  138728 ttgggttccaactccactcgtaaaacaaacaagccggcacgttcaa 138683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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