View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9190_low_4 (Length: 720)
Name: NF9190_low_4
Description: NF9190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9190_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 330; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 262 - 703
Target Start/End: Original strand, 43818194 - 43818636
Alignment:
| Q |
262 |
taaggaaaaactgaagatctttatcattgaaaatactgaactaaataaactaaatatccatcatcatatatacaaaatcaaaatgaacactaaaaatgca |
361 |
Q |
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| T |
43818194 |
taaggaaaaactgaagatctttatcattgaaaatactgaactaaataaactaaatatccatcatcatatatacaaaatcaaaatgaacactgaaaatgca |
43818293 |
T |
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| Q |
362 |
aaacacccttcaaaacattacagagataaaggtctaattattcacttaatgactagggagagttgttactaatataatctccatctgaaaggggaaaaca |
461 |
Q |
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| T |
43818294 |
aaacacccttcaaaacattacaaaggtaaaggtctaattattcacttaatgactagggagagttgttactaatataatctccatctgaaaggggaaaaca |
43818393 |
T |
|
| Q |
462 |
actaag-gnnnnnnnggataaaggaaaatgatctgcatttttctctagtactgtccttggtggaatttcatttacatccagaaattacatagggatactc |
560 |
Q |
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|||||| ||||||||||||||||||||||||||||||| |||| |||||||||||||||||| | ||||| || |||| |||||||| |
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| T |
43818394 |
actaagaaaaaaaaaggataaaggaaaatgatctgcatttttctctgttactccccttggtggaatttcattcgccaccagacatgacatgaggatactc |
43818493 |
T |
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| Q |
561 |
atggagggaagagatgaagaaaagttagctcaaactcctttgaagataaggaaattgagagtctcaagagtgaagtatatgaatgttcccttagaatgag |
660 |
Q |
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| T |
43818494 |
atggagggaagatatgaagaaaaagtagctcaaactcctttgaaaataaggaaattgagagtctcaagagtgaagtatatgaatgttcccttagaatgag |
43818593 |
T |
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| Q |
661 |
tgaaaaaacacccaaaacttgaacctaccacacattgccatcc |
703 |
Q |
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| T |
43818594 |
tgaaaaaacagccaaaacttgaacctaccacacattgccatcc |
43818636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 43817862 - 43818080
Alignment:
| Q |
1 |
gactttgaaaagaaaaggttgtccccacctttgattcgaatctggattcctacctttgattccattattagtttttcttctaatccaatttcagttggcc |
100 |
Q |
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| T |
43817862 |
gacttcgaaaagaaaaggttgtccccacctttgattcgaatctggattcctacctttgattccattattagtttttcttctaatcaaatttcagttggcc |
43817961 |
T |
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| Q |
101 |
ttgttgttgttctttgatatactttaaacatctgcaaattcttcatcttcaaattgatattggtgtactctttaatttaatcaacttgattcataaaaat |
200 |
Q |
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| T |
43817962 |
ttgttgttgttctttgatatactttaaacatctgcaaattcttcatcttcaaattgatattggtgtactctttaatttaatcaacttgattcataaaaat |
43818061 |
T |
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| Q |
201 |
attatttcatacatgtaat |
219 |
Q |
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| T |
43818062 |
attatttcatacatgtaat |
43818080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 225 - 266
Target Start/End: Original strand, 43818133 - 43818174
Alignment:
| Q |
225 |
tgagggattggaaaagaacatccacacaactttcagataagg |
266 |
Q |
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| T |
43818133 |
tgagggagtggaaaagaacatccacacaactttcagataagg |
43818174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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