View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9190_low_7 (Length: 321)
Name: NF9190_low_7
Description: NF9190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9190_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 185; Significance: 1e-100; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 17 - 201
Target Start/End: Complemental strand, 6855241 - 6855057
Alignment:
| Q |
17 |
cacagagtacaagagatcaaagttacctagaagcagaaggattgtaaaatttgcatatggtggtgttttatctggtggtgctgttcgagaaagagtcatt |
116 |
Q |
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| T |
6855241 |
cacagagtacaagagatcaaagttacctagaagcagaaggattgtaaaatttgcatatggtggtgttttatctggtggtgctgttcgagaaagagtcatt |
6855142 |
T |
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| Q |
117 |
cgagctttcttggttgaaaagcaaaagatagtcaagaatgttttgaagatccaaaagacaaaggaaaaacaagctttgaagggat |
201 |
Q |
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| T |
6855141 |
cgagctttcttggttgaaaagcaaaagatagtcaagaatgttttgaagatccaaaagacaaaggaaaaacaagctttgaagggat |
6855057 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 68 - 303
Target Start/End: Original strand, 6823024 - 6823258
Alignment:
| Q |
68 |
tgcatatggtggtgttttatctggtggtgctgttcgagaaagagtcattcgagctttcttggttgaaaagcaaaagatagtcaagaatgttttgaagatc |
167 |
Q |
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| T |
6823024 |
tgcatattgtagtattttatgtggaggcgctgttagagaaagaatcattcgagctttcttggttgaagagaaaaagatagtcaagaatgttctgaagatc |
6823123 |
T |
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| Q |
168 |
caaaagacaaaggaaaaacaagctttgaagggatgaattttatgaaaggagatacatatctttttggaggagttttaggtttgagtga-tatagtacaag |
266 |
Q |
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| T |
6823124 |
cgaaagagaaaggaaaaacaagctttgaagggatgaattttatgaaaggag--acatatcttttcagaggaattttaggtttgagtgattatagtacaag |
6823221 |
T |
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| Q |
267 |
cacaaaattcattagagttgtttcctttgttaatttt |
303 |
Q |
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| T |
6823222 |
cacaaaatttattagagttgttccctttgtgaatttt |
6823258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 120 - 288
Target Start/End: Original strand, 24245690 - 24245859
Alignment:
| Q |
120 |
gctttcttggttgaaaagcaaaagatagtcaagaatgttttgaagatccaaaagacaaaggaaaaacaagctttgaagggatgaattttatgaaaggaga |
219 |
Q |
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| T |
24245690 |
gctttcttggttgaagagcaaaagatcgtcaagaaagtcttgaagatccaaaagacaaaggaaaagcaagctttgaagggttaagtttcattaaacgaga |
24245789 |
T |
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| Q |
220 |
tacatatctttttggaggagttttaggtttgagtga-tatagtacaagcacaaaattcattagagttgtt |
288 |
Q |
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| T |
24245790 |
taaagatctttttggaggagttttaggtttgagtgattatagtaaaagcacaaaatttattagagctgtt |
24245859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 254 - 304
Target Start/End: Complemental strand, 6855059 - 6855009
Alignment:
| Q |
254 |
gatatagtacaagcacaaaattcattagagttgtttcctttgttaattttg |
304 |
Q |
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| T |
6855059 |
gatatagtacaagcacaaaattcattagagttgtttcctttgttaattttg |
6855009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 21 - 109
Target Start/End: Original strand, 24244979 - 24245067
Alignment:
| Q |
21 |
gagtacaagagatcaaagttacctagaagcagaaggattgtaaaatttgcatatggtggtgttttatctggtggtgctgttcgagaaag |
109 |
Q |
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| T |
24244979 |
gagtacaagagatctaggttacctagaaacaggaggactgtgaatcgtgcctatggtggagttttatctggaggtgctgttagagaaag |
24245067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 120 - 190
Target Start/End: Complemental strand, 2418914 - 2418844
Alignment:
| Q |
120 |
gctttcttggttgaaaagcaaaagatagtcaagaatgttttgaagatccaaaagacaaaggaaaaacaagc |
190 |
Q |
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| T |
2418914 |
gctttccttgttgaagagcaaaaaatagttaagaaagttttgaagatccagaaaacaaaagaaaagcaagc |
2418844 |
T |
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