View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9191_low_11 (Length: 351)
Name: NF9191_low_11
Description: NF9191
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9191_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 4167110 - 4167352
Alignment:
| Q |
1 |
agtaagtgtcaacaattttgcaaagagaaatctttccctagctatagatagaatgtttaagatttatttgttttcctgcaacttaccgaattatcgtttc |
100 |
Q |
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| T |
4167110 |
agtaagtgtcaacaattttgccaagagaaatctttccctagctatagatagaatgtttaagatttatttgttttcctgcaacttaccgaaatatcgtttc |
4167209 |
T |
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| Q |
101 |
tattttgtttcattttctatatttcaacatttctttgtcatgtgtttgattcttccatgtttaatttggagaccatggtatcatgtagattacatcgtct |
200 |
Q |
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| T |
4167210 |
tattttgtttcattttctatatttcaacatttcttcgtcacgtgtttgatttttccatgtttaatttggagaccatggtatcatgtagattacatcgtct |
4167309 |
T |
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| Q |
201 |
gctatatccaactatttcgtaactgatgtatgtcacttacaat |
243 |
Q |
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| T |
4167310 |
gctatatccaactaattcgtaactgatgtatgtcacttacaat |
4167352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 4151341 - 4151586
Alignment:
| Q |
1 |
agtaagtgtcaacaattttgcaaagagaaatctttccctagctatagatagaatgtttaagatttatttgttttcctgcaacttaccgaattatcgtttc |
100 |
Q |
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| T |
4151341 |
agtaagtgtcaacaattttgccaagagaaatctttccctagctatagatagaatgtttaagatttatttgttttcctgcaacttaccgaaatatcgtttc |
4151440 |
T |
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| Q |
101 |
tattttgtttcattttctatatttcaacatttctttgtcatgtgtttgattcttccatgtttaatttggagaccatggtatcatgtagattacatcgtct |
200 |
Q |
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| T |
4151441 |
tattttgtttcattttctatatttcaacatttcttcgtcacgtgtttgatttttccatgtttaatttggagaccatggtatcatgtagattacatcgtct |
4151540 |
T |
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| Q |
201 |
gctatatccaactatttcgt---aactgatgtatgtcacttacaat |
243 |
Q |
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| T |
4151541 |
gctatatccaactatttcgtataaactgatgtctgtcacttacaat |
4151586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 241 - 314
Target Start/End: Original strand, 4167474 - 4167547
Alignment:
| Q |
241 |
aatgctcgatgaatttcattttatatcaagtcctgcatgtaacgcagattattattagcacactataatattac |
314 |
Q |
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| T |
4167474 |
aatgctcgatgaatttcattttatatcaagtcctgcatgtaacgcagattattattagcacactataatattac |
4167547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 45 - 121
Target Start/End: Original strand, 7021167 - 7021244
Alignment:
| Q |
45 |
tagatagaatgtttaaga-tttatttgttttcctgcaacttaccgaattatcgtttctattttgtttcattttctata |
121 |
Q |
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| T |
7021167 |
tagatagcatgtttaagaatttatttattttcctgcaacttattgaattatcgtttctattttgtttcattttctata |
7021244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 174 - 217
Target Start/End: Original strand, 7021282 - 7021325
Alignment:
| Q |
174 |
catggtatcatgtagattacatcgtctgctatatccaactattt |
217 |
Q |
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| T |
7021282 |
catggtatcatatagattacatcgtctgctgtatccaactattt |
7021325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 241 - 294
Target Start/End: Original strand, 4152183 - 4152241
Alignment:
| Q |
241 |
aatgctcgatgaatttcatttta-----tatcaagtcctgcatgtaacgcagattatta |
294 |
Q |
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| T |
4152183 |
aatgcttgatgaatttcattttagctactatcaagtcctgcatgtaacgcagattatta |
4152241 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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