View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9191_low_16 (Length: 251)
Name: NF9191_low_16
Description: NF9191
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9191_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 164; Significance: 9e-88; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 4 - 220
Target Start/End: Complemental strand, 39522205 - 39521989
Alignment:
| Q |
4 |
catcattggttccccttctcttctccactccctacttctaccaacttctatgaatagcaatcatcaatttcataacttnnnnnnnntcatcaaacaaaca |
103 |
Q |
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| T |
39522205 |
catcattggttccccttctcttctccactccctacttctaccaacttctatgaatagcaatcatcaatttcataacttaaaaaaaatcatcaaacaaaca |
39522106 |
T |
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| Q |
104 |
caattttcctctctcactatgtcaacctttcacttccacacaattcaacgctctatctttctacttgcnnnnnnncttcaattctcatcattacaattcc |
203 |
Q |
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| T |
39522105 |
caattttcctctctcaccatgtcaacctttcacttccacacaattcaacgctctatctttctccttgctttttttcttcaattctcatcattacaattcc |
39522006 |
T |
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| Q |
204 |
cctcactcggatacgat |
220 |
Q |
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| T |
39522005 |
cctcactcggatacgat |
39521989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 180 - 236
Target Start/End: Complemental strand, 39525529 - 39525473
Alignment:
| Q |
180 |
ttcaattctcatcattacaattcccctcactcggatacgatgaacaagacatatact |
236 |
Q |
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| T |
39525529 |
ttcaattctcatcattatacttcccctcgctcggatacgatgaacaagacatatact |
39525473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 179 - 236
Target Start/End: Complemental strand, 39581927 - 39581870
Alignment:
| Q |
179 |
cttcaattctcatcattacaattcccctcactcggatacgatgaacaagacatatact |
236 |
Q |
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| T |
39581927 |
cttcaattctcatcattacagttcgcctcacttggatacgatgaccaagacatatact |
39581870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 15 - 69
Target Start/End: Complemental strand, 39581361 - 39581306
Alignment:
| Q |
15 |
ccccttctcttctcc-actccctacttctaccaacttctatgaatagcaatcatca |
69 |
Q |
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| T |
39581361 |
ccccttctcttctcccactccctacttctactaacttctatgaatagcagtcatca |
39581306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 179 - 236
Target Start/End: Complemental strand, 39544820 - 39544763
Alignment:
| Q |
179 |
cttcaattctcatcattacaattcccctcactcggatacgatgaacaagacatatact |
236 |
Q |
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||||||||| ||||||||||||| |||||||||||||||||| | ||||||| ||||| |
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| T |
39544820 |
cttcaattcgcatcattacaatttccctcactcggatacgatcaccaagacacatact |
39544763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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