View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9191_low_3 (Length: 570)
Name: NF9191_low_3
Description: NF9191
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9191_low_3 |
 | |
|
| [»] scaffold0004 (1 HSPs) |
| | |
|
| [»] scaffold0023 (1 HSPs) |
| | |
|
| [»] scaffold0013 (1 HSPs) |
| | |
|
| [»] scaffold0079 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 400; Significance: 0; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 1 - 475
Target Start/End: Complemental strand, 17278977 - 17278505
Alignment:
| Q |
1 |
gaagcttactttcaacttgattgtgatgaaattgaatttgaaataatctcaactgaaataattgagattaggttaagtaaacaaaataattcacaatcaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17278977 |
gaagcttactttcaacttgattgtgatgaaactgaatttgaaaaaatctcaactgaagtaattgagattaggttaagtaaacaaaataattcacaatcaa |
17278878 |
T |
|
| Q |
101 |
atcaagataacttcaaggaatgaaatcatatacaaaaatattgaagaaatctaaaaggatagggatgagaagaacactgagattgatataagttccccct |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| |||||||||| ||||||||||||||||||||||| |
|
|
| T |
17278877 |
atcaagataacttcaaggaatgaaatcatatacaaaaatattgcagaaatctaaaaggatatggaagagaagaacattgagattgatataagttccccct |
17278778 |
T |
|
| Q |
201 |
ttcgtcctcgattcagggtacatcctctcttcgtgatagaaaatgtctctgacacggtctttcactatgatgaaaaatgtttacaaattgttgtgattac |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17278777 |
ttcgtcctcgattcagggtacatcctctcttcgtgatagaaaatgtctctgacacggtctttcactatgatgaaaaatgtttacaaattgttgtgattac |
17278678 |
T |
|
| Q |
301 |
aaaagattcctttgattcccaaatctttaatcctaagcaacaacacttccaccaatattcaagtcctcttgaaattggagatcctctaggtcttcgaaac |
400 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||| ||| |||||||||||||||||||| |||||||||||||||||||| |||||||||| ||||| |
|
|
| T |
17278677 |
aaaagattccttcgattcccaaatctttaatcctaaggaaccacacttccaccaatattcaattcctcttgaaattggagatcttctaggtctttgaaac |
17278578 |
T |
|
| Q |
401 |
tcaagcttccatatgcgatcccttgaattgcttcccacgaattcgtctttgctaggaaccaaccaggccaaacat |
475 |
Q |
| |
|
|||||||||| |||| ||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
17278577 |
tcaagcttcc--atgcaatcccttgaattgcttcccgcgaattcgtctttgctaggaatcaaccaggccaaacat |
17278505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 227 - 413
Target Start/End: Original strand, 3462734 - 3462920
Alignment:
| Q |
227 |
ctcttcgtgatagaaaatgtctctgacacggtctttcactatgatgaaaaatgtttacaaattgttgtgattacaaaagattcctttgattcccaaatct |
326 |
Q |
| |
|
|||||| ||||||||||||||||| || || ||| ||||||| |||||||||||||||||||||| | || ||||||||||||| |||||| ||||| |
|
|
| T |
3462734 |
ctcttcttgatagaaaatgtctctatcaaggacttccactatgttgaaaaatgtttacaaattgttatagttgcaaaagattccttcaattccctaatct |
3462833 |
T |
|
| Q |
327 |
ttaatcctaagcaacaacacttccaccaatattcaagtcctcttgaaattggagatcctctaggtcttcgaaactcaagcttccata |
413 |
Q |
| |
|
| ||||||||||||| || || |||||| | |||| |||| ||||||||||||| ||||||||| ||||||||||||||||||||| |
|
|
| T |
3462834 |
tcaatcctaagcaaccacgctaccaccattcttcatttccttttgaaattggagagcctctaggttttcgaaactcaagcttccata |
3462920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 197 - 412
Target Start/End: Original strand, 13602900 - 13603115
Alignment:
| Q |
197 |
ccctttcgtcctcgattcagggtacatcctctcttcgtgatagaaaatgtctctgacacggtctttcactatgatgaaaaatgtttacaaattgttgtga |
296 |
Q |
| |
|
|||||||| ||||| |||||| ||| ||| |||||| |||||||||| ||| | || || ||| ||||||| |||||||||||||||||||||| || |
|
|
| T |
13602900 |
ccctttcgccctcgcttcaggatacctccactcttcttgatagaaaacatctttatcaaggacttccactatgttgaaaaatgtttacaaattgttaaga |
13602999 |
T |
|
| Q |
297 |
ttacaaaagattcctttgattcccaaatctttaatcctaagcaacaacacttccaccaatattcaagtcctcttgaaattggagatcctctaggtcttcg |
396 |
Q |
| |
|
|||||||||||||||| ||| || ||| || |||| | |||||| ||| |||||||| ||||||| ||||| |||||||| || |||| || |||| |
|
|
| T |
13603000 |
ttacaaaagattccttcgataacccaattttcaatcttgagcaaccacaacaccaccaatcttcaagtactcttaaaattggaaattctcttagttttcg |
13603099 |
T |
|
| Q |
397 |
aaactcaagcttccat |
412 |
Q |
| |
|
|||||||||| ||||| |
|
|
| T |
13603100 |
aaactcaagcatccat |
13603115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 16 - 105
Target Start/End: Original strand, 13602732 - 13602821
Alignment:
| Q |
16 |
cttgattgtgatgaaattgaatttgaaataatctcaactgaaataattgagattaggttaagtaaacaaaataattcacaatcaaatcaa |
105 |
Q |
| |
|
|||||| |||| |||||||||||||||| |||||||| |||| ||||||||||||||||||| ||||||| |||||||||| ||||||| |
|
|
| T |
13602732 |
cttgatcgtgacgaaattgaatttgaaagaatctcaattgaagtaattgagattaggttaagctaacaaaagaattcacaattaaatcaa |
13602821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 489 - 562
Target Start/End: Complemental strand, 17278516 - 17278441
Alignment:
| Q |
489 |
caggccaaatataagggcataaaggataaatgaatcaattcaagggttttgaag--atttttgattcgaatcaaca |
562 |
Q |
| |
|
||||||||| ||||||| ||||||||||| |||||||||||||||||||||||| |||||| ||||||||||||| |
|
|
| T |
17278516 |
caggccaaacataagggtataaaggataattgaatcaattcaagggttttgaagatattttttattcgaatcaaca |
17278441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 152 - 287
Target Start/End: Original strand, 5506191 - 5506326
Alignment:
| Q |
152 |
taaaaggatagggatgagaagaacactgagattgatataagttccccctttcgtcctcgattcagggtacatcctctcttcgtgatagaaaatgtctctg |
251 |
Q |
| |
|
|||||| ||||||| || ||||||| ||||||| ||| | ||| ||| ||||||||||| |||| ||||| |||||||||||||||||| |||||| |
|
|
| T |
5506191 |
taaaagtatagggaagataagaacattgagatttatagaggtttccc-tttcgtcctcgcttcacatcacatcatctcttcgtgatagaaaaagtctcta |
5506289 |
T |
|
| Q |
252 |
acacggtctttcactatgat-gaaaaatgtttacaaa |
287 |
Q |
| |
|
| |||||| ||||||||| ||||||||||||||| |
|
|
| T |
5506290 |
tccaggtcttccactatgataaaaaaatgtttacaaa |
5506326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 226 - 288
Target Start/End: Original strand, 18618504 - 18618565
Alignment:
| Q |
226 |
tctcttcgtgatagaaaatgtctctgacacggtctttcactatgatgaaaaatgtttacaaat |
288 |
Q |
| |
|
|||||||||||||||||||| || | ||||| |||||||||||||| ||||||||||||||| |
|
|
| T |
18618504 |
tctcttcgtgatagaaaatgcctatatcacgggctttcactatgatg-aaaatgtttacaaat |
18618565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0004 (Bit Score: 113; Significance: 6e-57; HSPs: 1)
Name: scaffold0004
Description:
Target: scaffold0004; HSP #1
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 215 - 434
Target Start/End: Complemental strand, 225792 - 225575
Alignment:
| Q |
215 |
agggtacatcctctcttcgtgatagaaaatgtctctgacacggtctttcactatgatgaaaaatgtttacaaattgttgtgattacaaaagattcctttg |
314 |
Q |
| |
|
||||||||||| | ||| |||||||||| |||||| || || ||||||||||| ||||||||||| ||||||||| ||||||||||||||| ||||| |
|
|
| T |
225792 |
agggtacatccattattcttgatagaaaacgtctctatcaaggactttcactatgttgaaaaatgttagcaaattgttatgattacaaaagatttctttg |
225693 |
T |
|
| Q |
315 |
attcccaaatctttaatcctaagcaacaacacttccaccaatattcaagtcctcttgaaattggagatcctctaggtcttcgaaactcaagcttccatat |
414 |
Q |
| |
|
|||||| |||||| ||||||||||||| ||||| |||||||| |||||||||||||||||||||||| ||| ||||||||||||||| |||||||| | |
|
|
| T |
225692 |
attccctaatcttcaatcctaagcaaccacactaccaccaatcttcaagtcctcttgaaattggagagcctttaggtcttcgaaactaaagcttcc--ac |
225595 |
T |
|
| Q |
415 |
gcgatcccttgaattgcttc |
434 |
Q |
| |
|
|| ||||||||||||||||| |
|
|
| T |
225594 |
gcaatcccttgaattgcttc |
225575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 104; Significance: 1e-51; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 263 - 433
Target Start/End: Original strand, 23143103 - 23143271
Alignment:
| Q |
263 |
cactatgatgaaaaatgtttacaaattgttgtgattacaaaagattcctttgattcccaaatctttaatcctaagcaacaacacttccaccaatattcaa |
362 |
Q |
| |
|
||||||| |||||||||||||||||||||| |||||||||||||||| ||| |||||| |||||| ||||||||||||| ||||| |||||||| ||||| |
|
|
| T |
23143103 |
cactatgttgaaaaatgtttacaaattgttatgattacaaaagattctttttattccctaatcttcaatcctaagcaaccacactaccaccaatcttcaa |
23143202 |
T |
|
| Q |
363 |
gtcctcttgaaattggagatcctctaggtcttcgaaactcaagcttccatatgcgatcccttgaattgctt |
433 |
Q |
| |
|
||||||||||||||||||| |||||| |||||||||||||||| |||| |||| |||||||||| ||||| |
|
|
| T |
23143203 |
gtcctcttgaaattggagagcctctaagtcttcgaaactcaagtttcc--atgcaatcccttgaactgctt |
23143271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 216 - 327
Target Start/End: Complemental strand, 22724711 - 22724603
Alignment:
| Q |
216 |
gggtacatcctctcttcgtgatagaaaatgtctctgacacggtctttcactatgatgaaaaatgtttacaaattgttgtgattacaaaagattcctttga |
315 |
Q |
| |
|
|||||||||||||| || ||||| ||||||||||| ||||||||| |||| |||| |||||||||||||| | | |||||||||| |||||||| || |
|
|
| T |
22724711 |
gggtacatcctctcatcttgatataaaatgtctctatcacggtcttccactctgataaaaaatgtttacaagtg--tatgattacaaa-gattccttcga |
22724615 |
T |
|
| Q |
316 |
ttcccaaatctt |
327 |
Q |
| |
|
||||| |||||| |
|
|
| T |
22724614 |
ttccctaatctt |
22724603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 352 - 432
Target Start/End: Complemental strand, 22337331 - 22337253
Alignment:
| Q |
352 |
ccaatattcaagtcctcttgaaattggagatcctctaggtcttcgaaactcaagcttccatatgcgatcccttgaattgct |
432 |
Q |
| |
|
||||| ||||||||||| |||||||| | | || | ||||||||||| ||||||||||| |||| ||||||||||||||| |
|
|
| T |
22337331 |
ccaatcttcaagtcctcatgaaattgaacagccacaaggtcttcgaatctcaagcttcc--atgcaatcccttgaattgct |
22337253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 352 - 432
Target Start/End: Complemental strand, 22267059 - 22266981
Alignment:
| Q |
352 |
ccaatattcaagtcctcttgaaattggagatcctctaggtcttcgaaactcaagcttccatatgcgatcccttgaattgct |
432 |
Q |
| |
|
||||| ||||||||||||||||| || | | | | ||||||||||| ||||||||||| |||| ||||||||||||||| |
|
|
| T |
22267059 |
ccaatcttcaagtcctcttgaaactgaacagtcacaaggtcttcgaatctcaagcttcc--atgcaatcccttgaattgct |
22266981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 271 - 405
Target Start/End: Complemental strand, 22886119 - 22885983
Alignment:
| Q |
271 |
tgaaaaatgtttacaaattgttgtgattacaaaagattcctttgatt-cccaaatctttaatcctaagcaacaacacttccaccaatattcaagtcctc- |
368 |
Q |
| |
|
|||||| |||||| |||||||| |||||||||| ||||| | ||| ||| |||||| |||||||||||| ||| ||||| || ||||||| | | |
|
|
| T |
22886119 |
tgaaaattgtttagaaattgttatgattacaaataattccctcgataaccctaatcttcaatcctaagcaatcacaacaccaccgatcttcaagtacccg |
22886020 |
T |
|
| Q |
369 |
ttgaaattggagatcctctaggtcttcgaaactcaag |
405 |
Q |
| |
|
|||||||||||||| |||| || ||||||||||||| |
|
|
| T |
22886019 |
ttgaaattggagattttctaagttttcgaaactcaag |
22885983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 104; Significance: 1e-51; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 223 - 409
Target Start/End: Original strand, 8815950 - 8816134
Alignment:
| Q |
223 |
tcctctcttcgtgatagaaaatgtctctgacacggtctttcactatgatgaaaaatgtttacaaattgttgtgattacaaaagattcctttgattcccaa |
322 |
Q |
| |
|
||||||||||||||||||||| |||||| |||| |||| || | |||||||||| ||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
8815950 |
tcctctcttcgtgatagaaaacgtctctaccacgatcttccatt--gatgaaaaatatttacaaattgttgtgattacaaaagattcctttgattctgta |
8816047 |
T |
|
| Q |
323 |
atctttaatcctaagcaacaacacttccaccaatattcaagtcctcttgaaattggagatcctctaggtcttcgaaactcaagcttc |
409 |
Q |
| |
|
|||| ||||||||||||| ||||| |||| ||||||||||| |||||||||||||||| ||| ||||||||||||||||||||||| |
|
|
| T |
8816048 |
gtcttcaatcctaagcaaccacactaccactaatattcaagttctcttgaaattggagagcctgtaggtcttcgaaactcaagcttc |
8816134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 196 - 412
Target Start/End: Complemental strand, 14800967 - 14800751
Alignment:
| Q |
196 |
cccctttcgtcctcgattcagggtacatcctctcttcgtgatagaaaatgtctctgacacggtctttcactatgatgaaaaatgtttacaaattgttgtg |
295 |
Q |
| |
|
||||||||||||||| ||| ||||| ||| |||||| |||| ||||| |||||| || | ||| ||||||| |||||||| ||||||||||||| || |
|
|
| T |
14800967 |
cccctttcgtcctcgcttcgaggtacctccactcttcttgattgaaaacgtctctatcaagaacttccactatgttgaaaaatatttacaaattgttatg |
14800868 |
T |
|
| Q |
296 |
attacaaaagattcctttgattcccaaatctttaatcctaagcaacaacacttccaccaatattcaagtcctcttgaaattggagatcctctaggtcttc |
395 |
Q |
| |
|
|||||||||||||||||||| || |||||| |||||||| ||||||| |||||||| ||||||| |||||||||||||| || | | |||||| |
|
|
| T |
14800867 |
gttacaaaagattcctttgataacctaatcttcaatcctaataaacaacaacaccaccaatcttcaagtactcttgaaattggaaattccacaagtcttc |
14800768 |
T |
|
| Q |
396 |
gaaactcaagcttccat |
412 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
14800767 |
aaaactcaagcttccat |
14800751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 323 - 412
Target Start/End: Complemental strand, 27174037 - 27173948
Alignment:
| Q |
323 |
atctttaatcctaagcaacaacacttccaccaatattcaagtcctcttgaaattggagatcctctaggtcttcgaaactcaagcttccat |
412 |
Q |
| |
|
||||| |||| |||| ||| |||| |||||||| ||||||| |||||||||||||| || | || ||||| ||||||||||||||||| |
|
|
| T |
27174037 |
atcttcaatcataagaaaccacaccaccaccaatcttcaagtactcttgaaattggaaattttataagtctttgaaactcaagcttccat |
27173948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 253 - 286
Target Start/End: Original strand, 14753232 - 14753265
Alignment:
| Q |
253 |
cacggtctttcactatgatgaaaaatgtttacaa |
286 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| |
|
|
| T |
14753232 |
cacggtcttccactatgatgaaaaatgtttacaa |
14753265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 85; Significance: 3e-40; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 145 - 309
Target Start/End: Complemental strand, 18371714 - 18371550
Alignment:
| Q |
145 |
agaaatctaaaaggatagggatgagaagaacactgagattgatataagttccccctttcgtcctcgattcagggtacatcctctcttcgtgatagaaaat |
244 |
Q |
| |
|
||||||||||||||||| ||| |||||||||||||||||| ||| ||||||||||||||||||| ||| |||||| ||| ||||| || |||||||| |
|
|
| T |
18371714 |
agaaatctaaaaggatatggaagagaagaacactgagatttatagtggttccccctttcgtcctcgcttcggggtacctccattcttcttgttagaaaat |
18371615 |
T |
|
| Q |
245 |
gtctctgacacggtctttcactatgatgaaaaatgtttacaaattgttgtgattacaaaagattc |
309 |
Q |
| |
|
|||||| || || ||| ||||||| |||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
18371614 |
gtctctatcaaggacttccactatgttgaaaaatgtttacaaattgttatgattacaaaagattc |
18371550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 16 - 407
Target Start/End: Original strand, 18830497 - 18830891
Alignment:
| Q |
16 |
cttgattgtgatgaaattgaatttgaaataatctcaactgaaataattgagattaggttaagt-aaacaaaataattcacaatcaaatcaagataa--ct |
112 |
Q |
| |
|
|||||||||||| ||||||||||||||| ||||||||||||| |||||||||||||| ||||| || |||| | ||||||||||||| |||| | |
|
|
| T |
18830497 |
cttgattgtgataaaattgaatttgaaagaatctcaactgaagtaattgagattaggctaagtgtaataaaagtaatcacaatcaaatc---ataaggtt |
18830593 |
T |
|
| Q |
113 |
tcaaggaatgaaatcatatacaa-aaatattgaagaaatctaaaaggatagggatgagaagaacactgagattgatataagttccccctttcgtcctcga |
211 |
Q |
| |
|
||| | |||||||||||||| || | | |||||||||||||| |||| |||||||||| |||||| ||| ||||||||||| ||||||| |
|
|
| T |
18830594 |
acaaacatagaaatcatatacaattaagaatatgaaaatctaaaaggatggggaatagaagaacaccgagattaatagtggttcccccttttgtcctcgt |
18830693 |
T |
|
| Q |
212 |
ttcagggtacatcctctcttcgtgatagaaaatgtctctgacacggtctttcacta-tgatgaaaaatgtttacaaattgttgtgattacaaaagattcc |
310 |
Q |
| |
|
|| |||||| ||| |||||| ||||||||| || || || || ||| ||||| | ||||||||||||||||| |||| |||||| | |||||||| |
|
|
| T |
18830694 |
tttggggtacctccactcttcttgatagaaatcgttcctatcaaggacttccactattcttgaaaaatgtttacaaactgttatgattatagaagattcc |
18830793 |
T |
|
| Q |
311 |
tttgat-tcccaaatctttaatcctaagcaacaacacttccaccaatattcaagtcctcttgaaattggagatcctctaggtcttcgaaactcaagct |
407 |
Q |
| |
|
|| ||| ||| |||||| ||||||||||||| ||| |||||||| |||||| |||||||||||||| || ||||| || || |||| ||||||| |
|
|
| T |
18830794 |
ttcgataaccctaatcttcaatcctaagcaactacaacaccaccaatcttcaagaactcttgaaattggaaattctctaagtttttgaaattcaagct |
18830891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 16 - 250
Target Start/End: Complemental strand, 21872623 - 21872391
Alignment:
| Q |
16 |
cttgattgtgatgaaattgaatttgaaataatctcaactgaaataattgagattaggttaagtaaacaaaataattcacaatcaaatcaagataacttca |
115 |
Q |
| |
|
|||||||||||| ||||||||||||||| ||| |||| ||| ||||||||||||||||||||| ||||||| | ||||||| |||||||||| |||| |
|
|
| T |
21872623 |
cttgattgtgataaaattgaatttgaaagaatttcaattgacataattgagattaggttaagtgaacaaaaataatcacaataaaatcaagatggtttca |
21872524 |
T |
|
| Q |
116 |
aggaatgaaatcatatacaaaaat-attgaagaaatctaaaaggatagggatgagaagaacactgagattgatataagttccccctttcgtcctcgattc |
214 |
Q |
| |
|
| | |||||||||||||| || | | ||||||||||| ||| ||| | ||||||| | |||| ||| ||||||||||||||||||| ||| |
|
|
| T |
21872523 |
aacatagaaatcatatacaattatgaatacgaaaatctaaaagtataaggaagttaagaacatcgggatttatagtggttccccctttcgtcctcgcttc |
21872424 |
T |
|
| Q |
215 |
agggtacatcctctcttcgtgatagaaaatgtctct |
250 |
Q |
| |
|
|||||| ||| |||| ||||||||||||||||| |
|
|
| T |
21872423 |
ggggtacgtccactct---tgatagaaaatgtctct |
21872391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 79; Significance: 1e-36; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 2 - 287
Target Start/End: Complemental strand, 40545913 - 40545629
Alignment:
| Q |
2 |
aagcttactttcaactt-gattgtgatgaaattgaatttgaaataatctcaactgaaataattgagattaggttaagtaaacaaaataattcacaatcaa |
100 |
Q |
| |
|
||||||||||||||||| |||||||| ||||||||| ||| |||||||| |||| |||| |||||||||| | ||||| | || |||||||||| |
|
|
| T |
40545913 |
aagcttactttcaacttcgattgtgagataattgaatta-aaagaatctcaattgaagtaatcgagattaggtaatgtaaaatagtgaaatcacaatcaa |
40545815 |
T |
|
| Q |
101 |
atcaagataacttcaaggaatgaaatcatatacaaaaatattgaagaaatctaaaaggatagggatgagaagaacactgagattgatataagttccccct |
200 |
Q |
| |
|
|| || | ||||||| |||||| ||| |||||| ||| || | |||| |||||||||| ||| |||||||||||||||||| ||| | ||||||||| |
|
|
| T |
40545814 |
ataaaaaaaacttcacacaatgaattcagatacaattataatgcaaaaat-taaaaggatatggaagagaagaacactgagatttatagaggttccccct |
40545716 |
T |
|
| Q |
201 |
ttcgtcctcgattcagggtacatcctctcttcgtgatagaaaatgtctctgacacggtctttcactatgatgaaaaatgtttacaaa |
287 |
Q |
| |
|
|||||||| ||| |||||| |||| |||||||||||||||| |||||| || ||| || ||||||||||||||||||||||||| |
|
|
| T |
40545715 |
cccgtcctcgcttcggggtacgtcctttcttcgtgatagaaaacgtctctatcatggttttccactatgatgaaaaatgtttacaaa |
40545629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 22 - 412
Target Start/End: Original strand, 22471244 - 22471638
Alignment:
| Q |
22 |
tgtgatgaaattgaatttgaaataatctcaactgaaataattgagattaggttaagtaaacaaaataattcacaatcaaatcaagataacttcaaggaat |
121 |
Q |
| |
|
|||||| ||| ||||||||||| ||| |||| |||| |||||||||||||||||||| ||||||| | |||||||||||||||||| ||||| | |
|
|
| T |
22471244 |
tgtgataaaaatgaatttgaaagaatttcaattgaagtaattgagattaggttaagtgaacaaaagtaatcacaatcaaatcaagattgtttcaaacata |
22471343 |
T |
|
| Q |
122 |
gaaatcatatacaaaaat-attgaagaaatctaaaaggatagggatgagaagaacactgagattgatataagttccccctttcgtcctcgattcagggta |
220 |
Q |
| |
|
|||||||||||||| || | || | |||| |||||||||| ||| |||||||||||| |||| | | |||||| ||||||||| | || ||||| |
|
|
| T |
22471344 |
gaaatcatatacaattatgaatgcaaaaatttaaaaggatatggaagagaagaacactaggatttacagtggttccctatttcgtccttgttttggggta |
22471443 |
T |
|
| Q |
221 |
catcctctcttcgtgatagaaaatgtctctgacacggtctttcacta-tgatgaaaaatgtttacaaattgttgtgattacaaaagattcctttgat-tc |
318 |
Q |
| |
|
| ||| ||||| | |||||||| |||||| | | ||| |||| || |||||||| || |||||||||| ||||||||||||||||| | ||| | |
|
|
| T |
22471444 |
cctccactcttttttatagaaaacgtctctattaaagacttctactattgttgaaaaatattcacaaattgttatgattacaaaagattccctcgataac |
22471543 |
T |
|
| Q |
319 |
ccaaatctttaatcctaagcaacaacacttccaccaatattcaagt-cctcttgaaattggagatcctctaggtcttcgaaactcaagcttccat |
412 |
Q |
| |
|
|| |||||| | || |||||||| ||| | |||||||| ||||| | |||||||||||||| || ||||| ||||| |||||||||||| |||| |
|
|
| T |
22471544 |
cctaatcttcagtcataagcaaccacaataccaccaatcttcaactatctcttgaaattggaaattctctaagtctttgaaactcaagctcccat |
22471638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 16 - 412
Target Start/End: Complemental strand, 8989639 - 8989239
Alignment:
| Q |
16 |
cttgattgtgatgaaattgaatttgaaataatctcaactgaaataattgagattaggttaagtaaacaaaa-taattcacaatcaaatcaagataacttc |
114 |
Q |
| |
|
|||||| ||||| || || ||||||||| |||| ||| |||| |||||||||||||||||||| ||||||| ||||| ||||||||||||| || || |
|
|
| T |
8989639 |
cttgatcgtgataaagtttaatttgaaagaatcacaattgaagtaattgagattaggttaagtgaacaaaagtaatt-acaatcaaatcaaaatggtatc |
8989541 |
T |
|
| Q |
115 |
aaggaatgaaatcatatacaaaaat-attgaagaaatctaaaaggatagggatgagaagaacactgagattgatataagttccccctttcgtcctcgatt |
213 |
Q |
| |
|
| ||||||||||||| || | | | ||||||||||||||| ||| ||||||| ||| | |||| ||| |||| | ||||| |||||| || |
|
|
| T |
8989540 |
gaacctacaaatcatatacaattatgaatacaaaaatctaaaaggataaggaagagaagaccaccgggatttatagtggttctctctttcatcctcgctt |
8989441 |
T |
|
| Q |
214 |
caggg-tacatcctctcttcgtgatagaaaatgtctctgacacggtctttcactatga-tgaaaaatgtttacaaattgttgtgattacaaaagattcct |
311 |
Q |
| |
|
| ||| ||| ||| |||||| |||||||||| ||||| || || ||| |||||| | |||||||| ||||||||||||| ||||||||||| ||||| |
|
|
| T |
8989440 |
cggggatacctccactcttcttgatagaaaacttctctatcaaggacttccactattattgaaaaatatttacaaattgttatgattacaaaatattcca |
8989341 |
T |
|
| Q |
312 |
ttg-attcccaaatctttaatcctaagcaacaacacttccaccaatattcaagtcctcttgaaattggagatcctctaggtcttcgaaactcaagcttcc |
410 |
Q |
| |
|
| | | ||| |||||| ||||| ||||||| ||| | |||||| |||||| |||||||||||||| || ||||| |||||||||||||||||| || |
|
|
| T |
8989340 |
tcgaaaaccctaatcttcaatcccaagcaaccacaacacaaccaatcttcaagaactcttgaaattggaaattctctaagtcttcgaaactcaagctccc |
8989241 |
T |
|
| Q |
411 |
at |
412 |
Q |
| |
|
|| |
|
|
| T |
8989240 |
at |
8989239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 147 - 341
Target Start/End: Original strand, 28914649 - 28914845
Alignment:
| Q |
147 |
aaatctaaaaggatagggatgagaagaacactgagattgatataagttccccctttcgtcctcgattcagggtacatcctctcttcgtgatagaaaatgt |
246 |
Q |
| |
|
|||||||||||||| |||| ||||||||||| ||| ||| ||||||| ||||||||| | ||| |||||| ||| | ||| |||||||||| | |
|
|
| T |
28914649 |
aaatctaaaaggattgggaagagaagaacaccagaatttataatggttccccttttcgtccttgcttcggggtacctccaccattcttgatagaaaacgc |
28914748 |
T |
|
| Q |
247 |
ctctgacacggtctttcactat-gatgaaaaatgtttacaaattgttgtgattacaaaagattcctttgat-tcccaaatctttaatcctaagcaac |
341 |
Q |
| |
|
|| | || || ||| |||||| | |||||||||||||||||||||| ||||||||||||||| ||||| ||| |||||| ||||||||||||| |
|
|
| T |
28914749 |
ctttatcaaggacttccactattgttgaaaaatgtttacaaattgttatgattacaaaagattttcttgataaccctaatcttcaatcctaagcaac |
28914845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 16 - 78
Target Start/End: Original strand, 28914517 - 28914579
Alignment:
| Q |
16 |
cttgattgtgatgaaattgaatttgaaataatctcaactgaaataattgagattaggttaagt |
78 |
Q |
| |
|
|||||||||||| |||| |||||||||| ||||| || | || ||||| |||||||||||||| |
|
|
| T |
28914517 |
cttgattgtgataaaatggaatttgaaagaatcttaattcaagtaattaagattaggttaagt |
28914579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 77; Significance: 2e-35; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 192 - 412
Target Start/End: Original strand, 7229742 - 7229961
Alignment:
| Q |
192 |
gttccccctttcgtcctcgattcagggtacatcctctcttcgtgatagaaaatgtctctgacacggtctttcactatgatgaaaaatgtttacaaattgt |
291 |
Q |
| |
|
||||||||||| || |||| ||| |||||| ||| |||||| |||||||| || ||||| || || ||| ||||||| ||||||||||||||||||||| |
|
|
| T |
7229742 |
gttcccccttttgttctcgcttcggggtac-tcccctcttcttgatagaatatctctctatcaaggacttccactatgttgaaaaatgtttacaaattgt |
7229840 |
T |
|
| Q |
292 |
tgtgattacaaaagattcctttgattcccaaatctttaatcctaagcaacaacacttccaccaatattcaagtcctcttgaaattggagatcctctaggt |
391 |
Q |
| |
|
| ||||||||||||||||||| ||| ||| ||| || |||||||||||| || | | |||| ||||||| |||||||||||| | | ||||||||| |
|
|
| T |
7229841 |
tatgattacaaaagattccttcgataccctaattttctatcctaagcaaccacgacactagcaatcttcaagttctcttgaaattgaaaagcctctaggt |
7229940 |
T |
|
| Q |
392 |
cttcgaaactcaagcttccat |
412 |
Q |
| |
|
||||||||||||||| ||||| |
|
|
| T |
7229941 |
cttcgaaactcaagcctccat |
7229961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 197 - 412
Target Start/End: Complemental strand, 9634346 - 9634131
Alignment:
| Q |
197 |
ccctttcgtcctcgattcagggtacatcctctcttcgtgatagaaaatgtctctgacacggtctttcactatgatgaaaaatgtttacaaattgttgtga |
296 |
Q |
| |
|
|||||||| ||||| |||||| ||| ||| |||||| |||||||||| ||| | || || ||| ||||||| |||||||||||||||||||||| || |
|
|
| T |
9634346 |
ccctttcgccctcgcttcaggatacctccactcttcttgatagaaaacatctttatcaaggacttccactatgttgaaaaatgtttacaaattgttaaga |
9634247 |
T |
|
| Q |
297 |
ttacaaaagattcctttgattcccaaatctttaatcctaagcaacaacacttccaccaatattcaagtcctcttgaaattggagatcctctaggtcttcg |
396 |
Q |
| |
|
|||||||||||||||| ||| || ||| || |||| | |||||| ||| |||||||| ||||||| ||||| |||||||| || |||| || |||| |
|
|
| T |
9634246 |
ttacaaaagattccttcgataacccaattttcaatcttgagcaaccacaacaccaccaatcttcaagtactcttaaaattggaaattctcttagttttcg |
9634147 |
T |
|
| Q |
397 |
aaactcaagcttccat |
412 |
Q |
| |
|
|||||||||| ||||| |
|
|
| T |
9634146 |
aaactcaagcatccat |
9634131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 16 - 105
Target Start/End: Complemental strand, 9634514 - 9634425
Alignment:
| Q |
16 |
cttgattgtgatgaaattgaatttgaaataatctcaactgaaataattgagattaggttaagtaaacaaaataattcacaatcaaatcaa |
105 |
Q |
| |
|
|||||| |||| |||||||||||||||| |||||||| |||| ||||||||||||||||||| ||||||| |||||||||| ||||||| |
|
|
| T |
9634514 |
cttgatcgtgacgaaattgaatttgaaagaatctcaattgaagtaattgagattaggttaagctaacaaaagaattcacaattaaatcaa |
9634425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 263 - 434
Target Start/End: Complemental strand, 16177595 - 16177428
Alignment:
| Q |
263 |
cactatgatgaaaaatgtttacaaattgttgtgattacaaaagattcctttgattcccaaatctttaatcctaagcaacaacacttccaccaatattcaa |
362 |
Q |
| |
|
||||||||||||||||| ||||| |||| ||||||||||||||||| | ||||| | |||||| |||||||||||| ||||| | || ||| ||| |
|
|
| T |
16177595 |
cactatgatgaaaaatggatacaa--tgttatgattacaaaagattccatcgattctctaatcttcaatcctaagcaatcacactacaactaatccccaa |
16177498 |
T |
|
| Q |
363 |
gtcctcttgaaattggagatcctctaggtcttcgaaactcaagcttccatatgcgatcccttgaattgcttc |
434 |
Q |
| |
|
||||||||| ||||||||| |||| | |||| ||||||||||||| |||| |||||||||||| |||| |
|
|
| T |
16177497 |
gtcctcttgtaattggagagcctcatgaccttcaaaactcaagcttc--aatgcaatcccttgaattacttc |
16177428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 17 - 301
Target Start/End: Original strand, 21935610 - 21935896
Alignment:
| Q |
17 |
ttgattgtgatgaaattgaatttgaaataatctcaactgaaataattgagattaggttaagt-aaacaaaataattcacaatcaaatcaagataacttca |
115 |
Q |
| |
|
|||||||| || ||||||||||||||| |||||||| |||| |||||||||||||||||||| || |||| | ||||||||| ||||| || |||| |
|
|
| T |
21935610 |
ttgattgtaataaaattgaatttgaaagaatctcaattgaagtaattgagattaggttaagtgcaataaaagtaatcacaatcagatcaaaatggtttca |
21935709 |
T |
|
| Q |
116 |
aggaatgaaatcatatacaaaaat-attgaagaaatctaaaaggatagggatgagaagaacactgagattgatataagttccccctttcgtcctcgattc |
214 |
Q |
| |
|
| | |||||||||||||| || | || | |||||||| |||||||||| |||||||||| | ||| ||| | | | ||||||||||| | | ||| |
|
|
| T |
21935710 |
aacatagaaatcatatacaattatgaatgcaaaaatctaagaggatagggaagagaagaacatcggaatttata-atggttcccctttcgtcattgtttc |
21935808 |
T |
|
| Q |
215 |
agggtacatcctctcttcgtgatagaaaatgtctctgacacggtctttcacta-tgatgaaaaatgtttacaaattgttgtgattaca |
301 |
Q |
| |
|
||||||| | |||||| |||||||||| ||| | || || ||| ||||| || ||||||||||||||||||| || |||||||| |
|
|
| T |
21935809 |
agggtacctttactcttcttgatagaaaacatctttatcaaggacttacactattgttgaaaaatgtttacaaatttttatgattaca |
21935896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 322 - 412
Target Start/End: Complemental strand, 4567177 - 4567086
Alignment:
| Q |
322 |
aatctttaatcctaagcaacaacacttccaccaatattcaagtcctc-ttgaaattggagatcctctaggtcttcgaaactcaagcttccat |
412 |
Q |
| |
|
|||||| || |||||||||| ||| |||||||| ||||||| || |||||||||||||| ||| | |||||||||||||||||| |||| |
|
|
| T |
4567177 |
aatcttcaaccctaagcaaccacaacaccaccaatcttcaagtagtccttgaaattggagattctccaagtcttcgaaactcaagctcccat |
4567086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 230 - 274
Target Start/End: Complemental strand, 8835479 - 8835435
Alignment:
| Q |
230 |
ttcgtgatagaaaatgtctctgacacggtctttcactatgatgaa |
274 |
Q |
| |
|
||||||||| ||||||||||| |||||||||||| ||||||||| |
|
|
| T |
8835479 |
ttcgtgataaaaaatgtctctatcacggtctttcattatgatgaa |
8835435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 65; Significance: 3e-28; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 1 - 408
Target Start/End: Complemental strand, 17349836 - 17349431
Alignment:
| Q |
1 |
gaagcttactttcaacttgattgtgatgaaattgaatttgaaataatctcaactgaaataattgagattaggttaagtaaacaaaataattcacaatcaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||| |||| ||||| | || |||||| | || ||||||||||||||| ||||||| || |||||||||| || |
|
|
| T |
17349836 |
gaagcttactttcaacttgattgtgat--aattaaattt-agattctctcaattaaattaattgagattaggtgaagtaaaaaattgaattcacaattaa |
17349740 |
T |
|
| Q |
101 |
atcaagataacttcaaggaatgaaatcatatacaaaaatattgaagaaatctaaaaggatagggatgagaagaacactgagattgatataagttccccct |
200 |
Q |
| |
|
| ||||| || || | || ||| |||||| ||| | | || ||||||||||||||||||| |||| ||||| | |||| ||| |||||||| | |
|
|
| T |
17349739 |
cttaagatgtctccacgcaaagaattcatatgcaattaaaatgcgaaaatctaaaaggatagggagaagaataacaccgcgatttatagtagttcccctt |
17349640 |
T |
|
| Q |
201 |
-ttcgtcctcgattcagggtacatcctctcttcgtgatagaaaatgtctctgacacggtctttcactatgatgaaaaatgtttacaaattgttgtgatta |
299 |
Q |
| |
|
|| ||||||| | ||||||||||| ||||| |||||||||| || | | || | ||||||||||||||||||||||||||||||| || |||||| |
|
|
| T |
17349639 |
gtttgtcctcgcta-agggtacatccactctttttgatagaaaacgtatttatcaaagactttcactatgatgaaaaatgtttacaaatttttatgatta |
17349541 |
T |
|
| Q |
300 |
caaaagattccttt--gattcccaaatctttaatcctaagcaacaacacttccaccaatattcaagtcctcttgaaattggagatcctctaggtcttcga |
397 |
Q |
| |
|
|||| || || ||||| | ||||||||| |||||||||| ||||| |||||||| |||||||| ||||||||| ||| ||| |||||||||| |
|
|
| T |
17349540 |
caaatttttttttgtcgattctctaatctttaaccctaagcaactacactaccaccaatcttcaagtcatcttgaaatat-agagcctataggtcttcgt |
17349442 |
T |
|
| Q |
398 |
aactcaagctt |
408 |
Q |
| |
|
||||||||||| |
|
|
| T |
17349441 |
aactcaagctt |
17349431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 65; Significance: 3e-28; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 215 - 379
Target Start/End: Original strand, 22586343 - 22586507
Alignment:
| Q |
215 |
agggtacatcctctcttcgtgatagaaaatgtctctgacacggtctttcactatgatgaaaaatgtttacaaattgttgtgattacaaaagattcctttg |
314 |
Q |
| |
|
||||||||||| |||||| |||||||||| |||||| || ||| ||||||| || |||||||||||||||| || ||||||||||||||||||| | |
|
|
| T |
22586343 |
agggtacatccactcttcttgatagaaaaagtctctagcaaatacttccactatgttggaaaatgtttacaaattattatgattacaaaagattccttcg |
22586442 |
T |
|
| Q |
315 |
attcccaaatctttaatcctaagcaacaacacttccaccaatattcaagtcctcttgaaattgga |
379 |
Q |
| |
|
|||||| |||||||||||||||| || ||||| ||| |||| || ||||||||||||||||| |
|
|
| T |
22586443 |
attccctaatctttaatcctaagagaccacactaccaacaatctttttgtcctcttgaaattgga |
22586507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 287 - 454
Target Start/End: Complemental strand, 27240883 - 27240719
Alignment:
| Q |
287 |
attgttgtgattacaaaagattcctttgattcccaaatctttaatcctaagcaacaacacttccaccaatattcaagtcctcttgaaattggagatcctc |
386 |
Q |
| |
|
|||||| ||||||| ||||||||||| ||||||| || ||| ||||||||| ||| ||||| |||||||| |||| || |||||||||||||||| | | |
|
|
| T |
27240883 |
attgttatgattaccaaagattccttcgattccctaaacttcaatcctaagtaaccacactaccaccaatcttcatgtgctcttgaaattggagagc--c |
27240786 |
T |
|
| Q |
387 |
taggtcttcgaaactcaagcttccatatgcgatcccttgaattgcttccca-cgaattcgtctttgcta |
454 |
Q |
| |
|
||||||||| |||||||| ||||| |||| |||||||||||| |||| || |||||||| ||||||| |
|
|
| T |
27240785 |
taggtcttcaaaactcaaacttcc--atgcaatcccttgaatttcttcacagtgaattcgtatttgcta |
27240719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 311 - 412
Target Start/End: Complemental strand, 14981609 - 14981508
Alignment:
| Q |
311 |
tttgattcccaaatctttaatcctaagcaacaacacttccaccaatattcaagtcctcttgaaattggagatcctctaggtcttcgaaactcaagcttcc |
410 |
Q |
| |
|
|||||||||| |||||| |||||| || || ||||| |||| ||| |||||||||||||||||||||||| ||||||||||||||| ||||||||||| |
|
|
| T |
14981609 |
tttgattccctaatcttcaatcctttgctaccacactaccactaatcttcaagtcctcttgaaattggagagcctctaggtcttcgattctcaagcttcc |
14981510 |
T |
|
| Q |
411 |
at |
412 |
Q |
| |
|
|| |
|
|
| T |
14981509 |
at |
14981508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 263 - 411
Target Start/End: Original strand, 18895692 - 18895840
Alignment:
| Q |
263 |
cactatgatgaaaaatgtttacaaattgttgtgattacaaaagattcctttgattcccaaatctttaatcctaagcaacaacacttccaccaatattcaa |
362 |
Q |
| |
|
||||||| ||||||||| ||||||||| || ||||||||||| |||| || ||| | |||||| ||||||||||||| ||| |||||||| ||||| |
|
|
| T |
18895692 |
cactatgttgaaaaatgcttacaaatttttatgattacaaaatattcattcgataagctaatcttcaatcctaagcaaccacaacaccaccaatcttcaa |
18895791 |
T |
|
| Q |
363 |
gtcctcttgaaattggagatcctctaggtcttcgaaactcaagcttcca |
411 |
Q |
| |
|
|| ||||||||||| || ||||| | ||||| |||||||||| ||||| |
|
|
| T |
18895792 |
gtactcttgaaatttgaaatccttcaagtctttgaaactcaagtttcca |
18895840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 152 - 286
Target Start/End: Complemental strand, 16884507 - 16884376
Alignment:
| Q |
152 |
taaaaggatagggatgagaagaacactgagattgatataagttcccccttt-cgtcctcgattcagggtacatcctctcttcgtgatagaaaatgtctct |
250 |
Q |
| |
|
||||| |||||||| ||||| ||||| ||||| ||| | |||| |||||| |||||||| | |||||||||| |||||| |||| |||||| | |||| |
|
|
| T |
16884507 |
taaaaagatagggaagagaa-aacaccaagatttataaaggttctcccttttcgtcctcgtt--agggtacatcatctctttgtgaaagaaaacgcctct |
16884411 |
T |
|
| Q |
251 |
gacacggtctttcactatgatgaaaaatgtttacaa |
286 |
Q |
| |
|
||||| ||| |||||||||| ||||||||||||| |
|
|
| T |
16884410 |
atcacgggcttccactatgatg-aaaatgtttacaa |
16884376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 174 - 250
Target Start/End: Original strand, 18576908 - 18576984
Alignment:
| Q |
174 |
acactgagattgatataagttccccctttcgtcctcgattcagggtacatcctctcttcgtgatagaaaatgtctct |
250 |
Q |
| |
|
||||||||||| ||| |||||||||||||||||||| || |||||| || |||||| || ||||||| |||||| |
|
|
| T |
18576908 |
acactgagatttatagtagttccccctttcgtcctcgtatcggggtacgtctactcttcttggtagaaaacgtctct |
18576984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0023 (Bit Score: 59; Significance: 1e-24; HSPs: 1)
Name: scaffold0023
Description:
Target: scaffold0023; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 262 - 412
Target Start/End: Original strand, 109415 - 109565
Alignment:
| Q |
262 |
tcactatgatgaaaaatgtttacaaattgttgtgattacaaaagattcctttgattcccaaatctttaatcctaagcaacaacacttccaccaatattca |
361 |
Q |
| |
|
||||||||||||||||||| ||||||| ||| |||||| | |||||| | | |||||| |||||| ||||| || ||| ||||| |||||||| |||| |
|
|
| T |
109415 |
tcactatgatgaaaaatgtctacaaatcgttatgattatagaagatttcgtcaattccctaatcttcaatcccgagaaaccacactaccaccaatcttca |
109514 |
T |
|
| Q |
362 |
agtcctcttgaaattggagatcctctaggtcttcgaaactcaagcttccat |
412 |
Q |
| |
|
||||||||||||||| ||| ||||||| ||| |||| ||||||||||||| |
|
|
| T |
109515 |
agtcctcttgaaatttcagagcctctagatctacgaatctcaagcttccat |
109565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 2 - 85
Target Start/End: Original strand, 6341 - 6424
Alignment:
| Q |
2 |
aagcttactttcaacttgattgtgatgaaattgaatttgaaataatctcaactgaaataattgagattaggttaagtaaacaaa |
85 |
Q |
| |
|
||||||| ||||||||||||||||| |||||| ||||||||| |||||||| |||| |||||||||||||||||| ||| |||| |
|
|
| T |
6341 |
aagcttattttcaacttgattgtgaggaaattaaatttgaaagaatctcaattgaagtaattgagattaggttaaataatcaaa |
6424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0079 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0079
Description:
Target: scaffold0079; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 36 - 184
Target Start/End: Original strand, 16487 - 16635
Alignment:
| Q |
36 |
atttgaaataatctcaactgaaataattgagattaggtt-aagtaaacaaaataattcacaatcaaatcaagataacttcaaggaatgaaatcatataca |
134 |
Q |
| |
|
||||| || |||||||| |||| |||||||||||||||| |||||||| ||| | |||||||||||| |||||||||||| ||| || ||||||| | |
|
|
| T |
16487 |
atttgtaagaatctcaattgaagtaattgagattaggttaaagtaaac-taatgaatcacaatcaaattaagataacttcacacaataaattcatataaa |
16585 |
T |
|
| Q |
135 |
aaaatattgaagaaatctaaaaggatagggatgagaagaacactgagatt |
184 |
Q |
| |
|
|| ||| || ||||||||||||||||||| |||| ||||| |||||| |
|
|
| T |
16586 |
aatataatgtgaaaatctaaaaggatagggaatagaataacacagagatt |
16635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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