View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9191_low_4 (Length: 546)
Name: NF9191_low_4
Description: NF9191
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9191_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 499; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 499; E-Value: 0
Query Start/End: Original strand, 19 - 533
Target Start/End: Original strand, 37902772 - 37903286
Alignment:
| Q |
19 |
atgagcccatttgataaataaaatgcaaaatacctggggagttggtgatgtaggtgcaggatcaacaatagaggaacacatgtctttcatagccattgtg |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37902772 |
atgagcccatttgataaataaaatgcaaaatacctggggagttggtgatgtaggagcaggatcaacaatagaggaacacatgtctttcatagccattgtg |
37902871 |
T |
|
| Q |
119 |
tgaagcgctgctgaagcatcacctttctgctttgggtttgtagattggagaagattcaacagcagttctaatcctgaagatttagcagcatagtgattaa |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
37902872 |
tgaagcgctgctgaagcatcacctttctgctttgggtttgtagattggagaagattcaacagcagttctaatcctgaaaatttagcagcatagtgattaa |
37902971 |
T |
|
| Q |
219 |
aaatactttctatgcactgccagagagggggacaagaaaagtaaattttaaagtttgttaccattattgtcaataaatatagttttccgatcatcagggg |
318 |
Q |
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||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37902972 |
aaatactttctatgcactgccagagagggggacaaaaaaaataaattttaaagtttgttaccattattgtcaataaatatagttttccgatcatcagggg |
37903071 |
T |
|
| Q |
319 |
aacataaatgtgcaagagcaagagctacacgtatttgaagatccttttccccagtgcgcataagatataacatgtgtttcagtacctgcaaaagaggaat |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37903072 |
aacataaatgtgcaagagcaagagctacacgtatttgaagatccttttccccagtgcgcataagatataacatgtgtttcagtacctgcaaaagaggaat |
37903171 |
T |
|
| Q |
419 |
tgatagaataatcaaaaccaataatgtaagcaacagtacaaggattgagtaggctgataatttgggagaaaacttactcgcccttgcatcttctcttcca |
518 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37903172 |
tgatagaataatcaaaaccaataatgtaagcaacagtacaaggattgagtaggctgataatttgggagaaaacttactcgcccttgcatcttctcttcca |
37903271 |
T |
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| Q |
519 |
atctttttaacgtct |
533 |
Q |
| |
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||||||||||||||| |
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| T |
37903272 |
atctttttaacgtct |
37903286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 499; E-Value: 0
Query Start/End: Original strand, 19 - 533
Target Start/End: Original strand, 37909283 - 37909797
Alignment:
| Q |
19 |
atgagcccatttgataaataaaatgcaaaatacctggggagttggtgatgtaggtgcaggatcaacaatagaggaacacatgtctttcatagccattgtg |
118 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37909283 |
atgagcccatttgataaataaaatgcaaaatacctggggagttggtgatgtaggagcaggatcaacaatagaggaacacatgtctttcatagccattgtg |
37909382 |
T |
|
| Q |
119 |
tgaagcgctgctgaagcatcacctttctgctttgggtttgtagattggagaagattcaacagcagttctaatcctgaagatttagcagcatagtgattaa |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
37909383 |
tgaagcgctgctgaagcatcacctttctgctttgggtttgtagattggagaagattcaacagcagttctaatcctgaaaatttagcagcatagtgattaa |
37909482 |
T |
|
| Q |
219 |
aaatactttctatgcactgccagagagggggacaagaaaagtaaattttaaagtttgttaccattattgtcaataaatatagttttccgatcatcagggg |
318 |
Q |
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||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37909483 |
aaatactttctatgcactgccagagagggggacaaaaaaaataaattttaaagtttgttaccattattgtcaataaatatagttttccgatcatcagggg |
37909582 |
T |
|
| Q |
319 |
aacataaatgtgcaagagcaagagctacacgtatttgaagatccttttccccagtgcgcataagatataacatgtgtttcagtacctgcaaaagaggaat |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37909583 |
aacataaatgtgcaagagcaagagctacacgtatttgaagatccttttccccagtgcgcataagatataacatgtgtttcagtacctgcaaaagaggaat |
37909682 |
T |
|
| Q |
419 |
tgatagaataatcaaaaccaataatgtaagcaacagtacaaggattgagtaggctgataatttgggagaaaacttactcgcccttgcatcttctcttcca |
518 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37909683 |
tgatagaataatcaaaaccaataatgtaagcaacagtacaaggattgagtaggctgataatttgggagaaaacttactcgcccttgcatcttctcttcca |
37909782 |
T |
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| Q |
519 |
atctttttaacgtct |
533 |
Q |
| |
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||||||||||||||| |
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|
| T |
37909783 |
atctttttaacgtct |
37909797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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