View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9191_low_6 (Length: 458)
Name: NF9191_low_6
Description: NF9191
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9191_low_6 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 394; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 18 - 447
Target Start/End: Complemental strand, 28820950 - 28820522
Alignment:
| Q |
18 |
atttctgacatagttggccttgtagccgctgttgcttgagtgcaaagcaaagcaatctcgataactttcttcacttcttctgcatcatagtcactagggt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
28820950 |
atttctgacatagttggccttgtagccgctgttgcttgagtgcaaagcaaagcaatctcgataactttcttcacttcttctgcatcatagtcaccagggt |
28820851 |
T |
|
| Q |
118 |
tcaatgtcttgtcgactaactccaagtgtctaccttcctcatatagtttccatgcctattaaagtaaaaatccaagttcatttagcatgtgaaaaagaaa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28820850 |
tcaatgtcttgtcgactaactccaagtgtctaccttcctcatatagtttccatgcctattaaagtaaaaatccaagttcatttagcatgtgaaaaagaaa |
28820751 |
T |
|
| Q |
218 |
atgagactcaatcatctaaagatccgtttggttcgagaaaacattttatgttcctaaacatagaacccttataagaaccaaaaacattttttgataccat |
317 |
Q |
| |
|
||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
28820750 |
atgagactcaatcatctaaagatccattcggttcaagaaaacattttatgttcctaaacatagaacccttataagaaccaaaaacatttttttataccat |
28820651 |
T |
|
| Q |
318 |
ataggcccttagttgctaaatgaagttctatgaaatttcttaccctttgaaggaggaattcaccatcaacatcatccctcaactcgccactcttttggcc |
417 |
Q |
| |
|
||||||||| ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28820650 |
ataggccctaagttgct-aatgaagttgtatgaaatttcttaccctttgaaggaggaattcaccatcaacatcatccctcaactcgccactcttttggcc |
28820552 |
T |
|
| Q |
418 |
acttatgatttctaggactacaacaccaaa |
447 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
28820551 |
acttatgatttctaggactacaacaccaaa |
28820522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 356 - 440
Target Start/End: Complemental strand, 28827030 - 28826946
Alignment:
| Q |
356 |
cttaccctttgaaggaggaattcaccatcaacatcatccctcaactcgccactcttttggccacttatgatttctaggactacaa |
440 |
Q |
| |
|
|||||| ||||||| ||||||||||||||| | ||| || ||| || ||||||||| ||||||||||||||||||||||||| |
|
|
| T |
28827030 |
cttaccttttgaagaaggaattcaccatcatcgtcaaccttcatttctgtactcttttgaccacttatgatttctaggactacaa |
28826946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 45 - 145
Target Start/End: Complemental strand, 28827394 - 28827294
Alignment:
| Q |
45 |
gctgttgcttgagtgcaaagcaaagcaatctcgataactttcttcacttcttctgcatcatagtcactagggttcaatgtcttgtcgactaactccaagt |
144 |
Q |
| |
|
|||| ||||||||| || | |||||||||||| || | |||||||||||||||| |||||||||| |||||| || ||||||||||| |||||||| |
|
|
| T |
28827394 |
gctgatgcttgagtacacaacaaagcaatctctatcattttcttcacttcttctccatcatagtcgttagggtctaagaccttgtcgactagctccaagt |
28827295 |
T |
|
| Q |
145 |
g |
145 |
Q |
| |
|
| |
|
|
| T |
28827294 |
g |
28827294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 45 - 117
Target Start/End: Complemental strand, 28836733 - 28836661
Alignment:
| Q |
45 |
gctgttgcttgagtgcaaagcaaagcaatctcgataactttcttcacttcttctgcatcatagtcactagggt |
117 |
Q |
| |
|
|||| ||||||||| || | || ||||||||| || | |||||||||||||||| ||||||||||| |||||| |
|
|
| T |
28836733 |
gctgatgcttgagtacacaacagagcaatctctatcattttcttcacttcttctccatcatagtcattagggt |
28836661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University