View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9191_low_8 (Length: 449)

Name: NF9191_low_8
Description: NF9191
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9191_low_8
NF9191_low_8
[»] chr5 (3 HSPs)
chr5 (233-447)||(34450995-34451214)
chr5 (70-190)||(34450828-34450949)
chr5 (235-288)||(40666742-40666795)
[»] chr3 (3 HSPs)
chr3 (1-66)||(32742081-32742146)
chr3 (235-282)||(43344161-43344208)
chr3 (235-282)||(50315712-50315759)
[»] chr7 (1 HSPs)
chr7 (2-66)||(19473763-19473827)
[»] chr8 (1 HSPs)
chr8 (235-282)||(4526966-4527013)
[»] chr1 (3 HSPs)
chr1 (235-282)||(9763664-9763711)
chr1 (3-42)||(11832471-11832510)
chr1 (235-282)||(27003106-27003153)


Alignment Details
Target: chr5 (Bit Score: 183; Significance: 8e-99; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 183; E-Value: 8e-99
Query Start/End: Original strand, 233 - 447
Target Start/End: Original strand, 34450995 - 34451214
Alignment:
Q  233 ctgagagggagaaagctgctcatcatagtaatggtgtgggagtatgacaaaggaaatccaaatgtagagttgtggttagacaaaagaatccaaggttaat 332  Q
    |||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34450995 ctgagagggagaaagctgctcagcatagtaatggtgtgggagtataacaaaggaaatccaaatgtagagttgtggttagacaaaagaatccaaggttaat 34451094  T
Q  333 ttgggcaatttatatc--ataaaatttaagaaagtggaccatcagtatgccaaatcattcgcgggaatatgccaatttatatcat---atgaaaacataa 427  Q
    ||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||| |||||    
T  34451095 ttgggcaatttatatcaaataaaatttaagaaagtggaccatcagtatgccaaatcattcgcgggaatatgccaatttatatcatatgatgaaagcataa 34451194  T
Q  428 aataaaatcaaaacaatgtt 447  Q
    ||||||||||||||||||||    
T  34451195 aataaaatcaaaacaatgtt 34451214  T

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Target: chr5; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 70 - 190
Target Start/End: Original strand, 34450828 - 34450949
Alignment:
Q  70 gtgttgatggattcttcaaattatgtgcactctaaagttattttttcttcaatggggtgaaatatcaaacaattataaggtacattaccaataa-ttttt 168  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  34450828 gtgttgatggattcttcaaagtatgtgcactctaaagttattttttcttcaatggggtgaaatatcaaacaattataaggtacattaccaataatttttt 34450927  T
Q  169 taagaaaattgcagcaaattct 190  Q
    ||||||||||||||||||||||    
T  34450928 taagaaaattgcagcaaattct 34450949  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 235 - 288
Target Start/End: Complemental strand, 40666795 - 40666742
Alignment:
Q  235 gagagggagaaagctgctcatcatagtaatggtgtgggagtatgacaaaggaaa 288  Q
    |||||||||||||| ||||| |||||||||||||||||| | |||||| |||||    
T  40666795 gagagggagaaagcggctcagcatagtaatggtgtgggattgtgacaagggaaa 40666742  T

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Target: chr3 (Bit Score: 54; Significance: 8e-22; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 32742081 - 32742146
Alignment:
Q  1 tgtataccaaatgaaaagatagtgggggcaccagcccacatactactgaacgtagttccgctcctg 66  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| ||||    
T  32742081 tgtataccaaatgaaaagatagtgggggcaccagcccacatactactcaacgtagctccgcccctg 32742146  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 235 - 282
Target Start/End: Complemental strand, 43344208 - 43344161
Alignment:
Q  235 gagagggagaaagctgctcatcatagtaatggtgtgggagtatgacaa 282  Q
    |||||||||||||||||||| |||||||||||||||||| | ||||||    
T  43344208 gagagggagaaagctgctcagcatagtaatggtgtgggactgtgacaa 43344161  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 235 - 282
Target Start/End: Original strand, 50315712 - 50315759
Alignment:
Q  235 gagagggagaaagctgctcatcatagtaatggtgtgggagtatgacaa 282  Q
    |||||||||||||||||||| |||||||||||||||||| | ||||||    
T  50315712 gagagggagaaagctgctcaacatagtaatggtgtgggactgtgacaa 50315759  T

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Target: chr7 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 2 - 66
Target Start/End: Complemental strand, 19473827 - 19473763
Alignment:
Q  2 gtataccaaatgaaaagatagtgggggcaccagcccacatactactgaacgtagttccgctcctg 66  Q
    ||||||| |||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||    
T  19473827 gtataccgaatgaaaagatagtgggggcaccagcccacataccactgaacgtagctccgcccctg 19473763  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 235 - 282
Target Start/End: Complemental strand, 4527013 - 4526966
Alignment:
Q  235 gagagggagaaagctgctcatcatagtaatggtgtgggagtatgacaa 282  Q
    |||||||||||||||||||| |||||||||||||||||| | ||||||    
T  4527013 gagagggagaaagctgctcagcatagtaatggtgtgggactgtgacaa 4526966  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 235 - 282
Target Start/End: Original strand, 9763664 - 9763711
Alignment:
Q  235 gagagggagaaagctgctcatcatagtaatggtgtgggagtatgacaa 282  Q
    |||||||||||||||||||| |||||||||||||||||| | ||||||    
T  9763664 gagagggagaaagctgctcagcatagtaatggtgtgggactgtgacaa 9763711  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 3 - 42
Target Start/End: Original strand, 11832471 - 11832510
Alignment:
Q  3 tataccaaatgaaaagatagtgggggcaccagcccacata 42  Q
    |||||| |||||||||||||||||||||||||||||||||    
T  11832471 tataccgaatgaaaagatagtgggggcaccagcccacata 11832510  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 235 - 282
Target Start/End: Complemental strand, 27003153 - 27003106
Alignment:
Q  235 gagagggagaaagctgctcatcatagtaatggtgtgggagtatgacaa 282  Q
    |||||||||||||||||||| |||||||||||||||||| | ||||||    
T  27003153 gagagggagaaagctgctcaacatagtaatggtgtgggactgtgacaa 27003106  T

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