View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9191_low_9 (Length: 378)

Name: NF9191_low_9
Description: NF9191
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9191_low_9
NF9191_low_9
[»] scaffold0133 (2 HSPs)
scaffold0133 (67-362)||(9378-9673)
scaffold0133 (36-362)||(13726-14043)
[»] chr6 (12 HSPs)
chr6 (85-362)||(16781976-16782253)
chr6 (109-349)||(16658896-16659134)
chr6 (219-346)||(17070396-17070523)
chr6 (191-346)||(16988338-16988490)
chr6 (219-346)||(16839372-16839499)
chr6 (109-346)||(16867041-16867276)
chr6 (219-346)||(16798059-16798186)
chr6 (219-348)||(18872327-18872457)
chr6 (219-348)||(18869850-18869980)
chr6 (219-348)||(18586845-18586975)
chr6 (219-348)||(18793764-18793894)
chr6 (250-349)||(16790258-16790357)
[»] scaffold0256 (1 HSPs)
scaffold0256 (36-362)||(10021-10324)
[»] chr3 (2 HSPs)
chr3 (95-346)||(38938380-38938627)
chr3 (184-346)||(7052370-7052531)
[»] chr8 (1 HSPs)
chr8 (222-346)||(13378987-13379112)
[»] scaffold0511 (1 HSPs)
scaffold0511 (219-348)||(10247-10377)
[»] scaffold0230 (1 HSPs)
scaffold0230 (219-348)||(5567-5697)
[»] chr5 (1 HSPs)
chr5 (164-259)||(11983113-11983206)
[»] scaffold0144 (1 HSPs)
scaffold0144 (219-344)||(38379-38504)


Alignment Details
Target: scaffold0133 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: scaffold0133
Description:

Target: scaffold0133; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 67 - 362
Target Start/End: Complemental strand, 9673 - 9378
Alignment:
Q  67 ccaccgtcattcactaattatttatttttctatagcagccaattttgacatgttgcagaagaactacatccactgatttaatatataatctttgaaaaca 166  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9673 ccactgtcattcactaattatttatttttctatagcagccaattttgacatgttgcagaagaactacatccactgatttaatatataatctttgaaaaca 9574  T
Q  167 aataacaactcatatttcatcttcctagagcaaagtcatctccaatccaaacaactttgattcatttctgttctcatatctgaaaatggctgatgcttta 266  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  9573 aataacaactcatatttcatcttcctagagcaaaatcatctccaatccaaacaactttgattcatttctgttctcacatctgaaaatggctgatgcttta 9474  T
Q  267 cttggaatcttgattcaaaacctcggatcatttgtacaagaggagtttgctacctatttgggtgttggagaattgacccaaagcctgtctagaaag 362  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||    
T  9473 cttggaatcttgattcaaaacctcggatcatttgtacaagaggagcttgctacctatttgggtgttggagaattgacccaaagcctatctagaaag 9378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0133; HSP #2
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 36 - 362
Target Start/End: Complemental strand, 14043 - 13726
Alignment:
Q  36 atggccatgtgccttcacagcttgnnnnnnnccaccgtcattcactaattatttatttttctatagcagccaattttgacatgttgcagaagaactacat 135  Q
    ||||||||||||||||||| ||||       | || |||||||||||||||||||||||||||||||||||||||| ||         ||||||||||||    
T  14043 atggccatgtgccttcacaacttgttttttcctactgtcattcactaattatttatttttctatagcagccaatttgga---------gaagaactacat 13953  T
Q  136 ccactgatttaatatataatctttgaaaacaaataacaactcatatttcatcttcctagagcaaagtcatctccaatccaaacaactttgattcatttct 235  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  13952 ccactgatttaatatataatctttgaaaacaaataacaactcatatttcatcttcctagagcaaaatcatctccaatccaaacaactttgattcatttct 13853  T
Q  236 gttctcatatctgaaaatggctgatgctttacttggaatcttgattcaaaacctcggatcatttgtacaagaggagtttgctacctatttgggtgttgga 335  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13852 gttctcacatctgaaaatggctgatgctttacttggaatcttgattcaaaacctcggatcatttgtacaagaggagtttgctacctatttgggtgttgga 13753  T
Q  336 gaattgacccaaagcctgtctagaaag 362  Q
    ||||||||||||||||| |||||||||    
T  13752 gaattgacccaaagcctatctagaaag 13726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 214; Significance: 1e-117; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 85 - 362
Target Start/End: Complemental strand, 16782253 - 16781976
Alignment:
Q  85 tatttatttttctatagcagccaattttgacatgttgcagaagaactacatccactgatttaatatataatctttgaaaacaaataacaactcatatttc 184  Q
    ||||| ||||||||||||| ||||| || ||| ||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  16782253 tatttttttttctatagcaaccaatattcacaagttgcagaaaaactacatccactgatttaatagataatctttgaaaacaaataacaactcatatttc 16782154  T
Q  185 atcttcctagagcaaagtcatctccaatccaaacaactttgattcatttctgttctcatatctgaaaatggctgatgctttacttggaatcttgattcaa 284  Q
    |||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| ||||||||    
T  16782153 atcttcctagagcaaagtcatctctaatctaaacaactttgattcatttctgttctcacatctgaaaatggctgatgctttacttggtatcgtgattcaa 16782054  T
Q  285 aacctcggatcatttgtacaagaggagtttgctacctatttgggtgttggagaattgacccaaagcctgtctagaaag 362  Q
    ||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| || |||||||||    
T  16782053 aacctcggatcttttgtacaagaggagcttgctacctatttgggtgttggagaattgacccaaagactatctagaaag 16781976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 109 - 349
Target Start/End: Complemental strand, 16659134 - 16658896
Alignment:
Q  109 ttttgacatgttgcagaagaactacatccactgatttaatatataatctttgaaaacaaataacaactcatatttcatcttcctagagcaaagtc-atct 207  Q
    |||||||| ||||||  |||||| || |||| ||||||||| |||  |  ||||||||||||| ||| |||||| || ||||| | ||||||||| ||||    
T  16659134 ttttgacaagttgcatcagaactgcaaccaccgatttaataaatagcccatgaaaacaaataataacgcatatt-caacttccaaaagcaaagtctatct 16659036  T
Q  208 ccaatccaaacaactttgattcatttctgttctcatatctg-aaaatggctgatgctttacttggaatcttgattcaaaacctcggatcatttgtacaag 306  Q
    |||| ||||||    ||| |||||||||||||||||| ||  ||||||||||| ||||||||||||||| ||||  ||||||||||||| ||||| | ||    
T  16659035 ccaaaccaaacc---ttgtttcatttctgttctcatacctacaaaatggctgaagctttacttggaatcgtgatagaaaacctcggatcttttgttcgag 16658939  T
Q  307 aggagtttgctacctatttgggtgttggagaattgacccaaag 349  Q
    ||||| ||||  ||| |||||||||||||||||||||||||||    
T  16658938 aggagattgcatcctttttgggtgttggagaattgacccaaag 16658896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 219 - 346
Target Start/End: Complemental strand, 17070523 - 17070396
Alignment:
Q  219 aactttgattcatttctgttctcatatctgaaaatggctgatgctttacttggaatcttgattcaaaacctcggatcatttgtacaagaggagtttgcta 318  Q
    ||||||||||||||||||||| ||| |||  |||||||||| ||||||||||||||| ||||| ||||||||||||| ||||| | ||||||| ||||      
T  17070523 aactttgattcatttctgttcacatttctcgaaatggctgaagctttacttggaatcgtgattgaaaacctcggatcttttgttcgagaggagattgcat 17070424  T
Q  319 cctatttgggtgttggagaattgaccca 346  Q
    ||| ||||||||||||||||||||||||    
T  17070423 cctttttgggtgttggagaattgaccca 17070396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 191 - 346
Target Start/End: Complemental strand, 16988490 - 16988338
Alignment:
Q  191 ctagagcaaagtcatctccaatccaaacaactttgattcatttctgttctcatatctgaaaatggctgatgctttacttggaatcttgattcaaaacctc 290  Q
    ||||||||||||||| |||||||||||    |||| |||||||||||||| ||||||| |||||||||| ||||||||||||||| ||||| ||||||||    
T  16988490 ctagagcaaagtcatttccaatccaaaa---tttggttcatttctgttctaatatctgtaaatggctgacgctttacttggaatcgtgattgaaaacctc 16988394  T
Q  291 ggatcatttgtacaagaggagtttgctacctatttgggtgttggagaattgaccca 346  Q
    ||||  ||||| | ||||||| ||||  ||| ||||||||||| | ||||||||||    
T  16988393 ggatattttgttcgagaggagcttgcatcctttttgggtgttgaaaaattgaccca 16988338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 219 - 346
Target Start/End: Complemental strand, 16839499 - 16839372
Alignment:
Q  219 aactttgattcatttctgttctcatatctgaaaatggctgatgctttacttggaatcttgattcaaaacctcggatcatttgtacaagaggagtttgcta 318  Q
    ||||||||||||||||||||| ||| |||  |||||||||| |||||| |||||||| ||||| ||||||||||||| ||||| | ||||||| ||||      
T  16839499 aactttgattcatttctgttcacatttctcgaaatggctgacgctttaattggaatcgtgattgaaaacctcggatcttttgttcgagaggagattgcat 16839400  T
Q  319 cctatttgggtgttggagaattgaccca 346  Q
    ||| ||||||||||||||||||||||||    
T  16839399 cctttttgggtgttggagaattgaccca 16839372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 109 - 346
Target Start/End: Original strand, 16867041 - 16867276
Alignment:
Q  109 ttttgacatgttgcagaagaactacatccactgatttaatatataatctttgaaaacaaataacaactcatatttcatcttcctagagcaaagtc-atct 207  Q
    |||||||| ||||||  |||||| || |||| || |||||| |||| | |||||||||||||||||  |||||| || ||||| | ||||||||| ||||    
T  16867041 ttttgacaagttgcatcagaactgcaaccaccgagttaataaataacccttgaaaacaaataacaaagcatatt-caacttccaaaagcaaagtctatct 16867139  T
Q  208 ccaatccaaacaactttgattcatttctgttctcatatctg-aaaatggctgatgctttacttggaatcttgattcaaaacctcggatcatttgtacaag 306  Q
    |||| ||||||    ||| |||||||||||||||||| ||  ||||||||||| |||||  |||||||| ||||  ||||||| ||||| ||||| | ||    
T  16867140 ccaaaccaaacc---ttgtttcatttctgttctcatacctacaaaatggctgaagctttgattggaatcgtgatagaaaaccttggatcttttgttcgag 16867236  T
Q  307 aggagtttgctacctatttgggtgttggagaattgaccca 346  Q
    ||||| ||||  ||| ||||||||||||||||||||||||    
T  16867237 aggagattgcatcctttttgggtgttggagaattgaccca 16867276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 219 - 346
Target Start/End: Complemental strand, 16798186 - 16798059
Alignment:
Q  219 aactttgattcatttctgttctcatatctgaaaatggctgatgctttacttggaatcttgattcaaaacctcggatcatttgtacaagaggagtttgcta 318  Q
    ||||||||| ||||||||||| ||| |||  |||||||||| |||||| |||||||| ||||| ||||||||||||| ||||| | ||||||| ||||      
T  16798186 aactttgatacatttctgttcacatttctcgaaatggctgacgctttaattggaatcgtgattgaaaacctcggatcttttgttcgagaggagattgcat 16798087  T
Q  319 cctatttgggtgttggagaattgaccca 346  Q
    ||| ||||||||||||||||||||||||    
T  16798086 cctttttgggtgttggagaattgaccca 16798059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 219 - 348
Target Start/End: Original strand, 18872327 - 18872457
Alignment:
Q  219 aactttgattcatttctgttctcatatctg-aaaatggctgatgctttacttggaatcttgattcaaaacctcggatcatttgtacaagaggagtttgct 317  Q
    ||||||||||||||||||||||| || ||| ||||||||||||| |||||||||||   ||||||||||||||||||| ||||| | ||||||| || |     
T  18872327 aactttgattcatttctgttctcgtacctgcaaaatggctgatgttttacttggaactgtgattcaaaacctcggatcttttgttcgagaggagctttcg 18872426  T
Q  318 acctatttgggtgttggagaattgacccaaa 348  Q
    |||| ||||||||||| ||||||||| ||||    
T  18872427 acctttttgggtgttgaagaattgacacaaa 18872457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 219 - 348
Target Start/End: Original strand, 18869850 - 18869980
Alignment:
Q  219 aactttgattcatttctgttctcatatctg-aaaatggctgatgctttacttggaatcttgattcaaaacctcggatcatttgtacaagaggagtttgct 317  Q
    ||||||||||||||| ||||||| |||||| ||||||||||||| |||||||||||   |||||||||||||||| || ||||| | ||||||| || |     
T  18869850 aactttgattcatttatgttctcttatctggaaaatggctgatgttttacttggaactgtgattcaaaacctcgggtcgtttgttcgagaggagctttcg 18869949  T
Q  318 acctatttgggtgttggagaattgacccaaa 348  Q
    |||| ||||||||||| ||||||||| ||||    
T  18869950 acctttttgggtgttgaagaattgacacaaa 18869980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 219 - 348
Target Start/End: Original strand, 18586845 - 18586975
Alignment:
Q  219 aactttgattcatttctgttctcatatctg-aaaatggctgatgctttacttggaatcttgattcaaaacctcggatcatttgtacaagaggagtttgct 317  Q
    ||||||||||||||||||||| | || ||| |||||| |||||| |||||||||||   ||||||||| ||||||||| ||||| | ||||||| || |     
T  18586845 aactttgattcatttctgttcacttacctgcaaaatgactgatgttttacttggaactgtgattcaaatcctcggatcttttgttcgagaggagctttcg 18586944  T
Q  318 acctatttgggtgttggagaattgacccaaa 348  Q
    |||| ||||||||||||||||||||| ||||    
T  18586945 acctttttgggtgttggagaattgacacaaa 18586975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 219 - 348
Target Start/End: Original strand, 18793764 - 18793894
Alignment:
Q  219 aactttgattcatttctgttctcatatctg-aaaatggctgatgctttacttggaatcttgattcaaaacctcggatcatttgtacaagaggagtttgct 317  Q
    ||||||||||||||||||||| | || ||| |||||| |||||| |||||||||||   ||||||||| ||||||||| ||||| | ||||||| || |     
T  18793764 aactttgattcatttctgttcacttacctgcaaaatgactgatgttttacttggaactgtgattcaaatcctcggatcttttgttcgagaggagctttcg 18793863  T
Q  318 acctatttgggtgttggagaattgacccaaa 348  Q
    |||| ||||||||||||||||||||| ||||    
T  18793864 acctttttgggtgttggagaattgacacaaa 18793894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 250 - 349
Target Start/End: Complemental strand, 16790357 - 16790258
Alignment:
Q  250 aaatggctgatgctttacttggaatcttgattcaaaacctcggatcatttgtacaagaggagtttgctacctatttgggtgttggagaattgacccaaag 349  Q
    |||||||||||| ||||||| ||| | | ||||||||||||||||| ||||| ||||||||| ||||  ||| |||||||||||| ||||||||||||||    
T  16790357 aaatggctgatgttttacttagaaccgtaattcaaaacctcggatcttttgttcaagaggagcttgcatcctttttgggtgttggggaattgacccaaag 16790258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0256 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: scaffold0256
Description:

Target: scaffold0256; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 36 - 362
Target Start/End: Complemental strand, 10324 - 10021
Alignment:
Q  36 atggccatgtgccttcacagcttgnnnnnnnccaccgtcattcactaattatttatttttctatagcagccaattttgacatgttgcagaagaactacat 135  Q
    ||||||||||||||||||| ||||       |||| ||||||||||||||||||| ||||||||||||| |||||||||||||||||| |||||||||||    
T  10324 atggccatgtgccttcacaacttgttttttgccactgtcattcactaattatttaattttctatagcagtcaattttgacatgttgcaaaagaactacat 10225  T
Q  136 ccactgatttaatatataatctttgaaaacaaataacaactcatatttcatcttcctagagcaaagtcatctccaatccaaacaactttgattcatttct 235  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||                   ||||||    ||||||||||||||||||||||||    
T  10224 ccactgatttaatatataatctttgaaaacaaataacaacgcatatt-------------------tcatct----tccaaacaactttgattcatttct 10148  T
Q  236 gttctcatatctgaaaatggctgatgctttacttggaatcttgattcaaaacctcggatcatttgtacaagaggagtttgctacctatttgggtgttgga 335  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10147 gttctcatatctgaaaatggctgatgctttacttggaatcttgattcaaaacctcggatcatttgtacaagaggagtttgctacctatttgggtgttgga 10048  T
Q  336 gaattgacccaaagcctgtctagaaag 362  Q
    ||||||||||||||||| |||||||||    
T  10047 gaattgacccaaagcctatctagaaag 10021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 127; Significance: 2e-65; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 95 - 346
Target Start/End: Original strand, 38938380 - 38938627
Alignment:
Q  95 tctatagcagccaattttgacatgttgcagaagaactacatccactgatttaatatataatctttgaaaacaaataacaactcatatttcatcttcctag 194  Q
    |||| |||||||||| |||||| |||||||||||||||||||||||||||||||| | |||||||||||| ||||||| || ||||||||||||||||||    
T  38938380 tctacagcagccaatattgacaagttgcagaagaactacatccactgatttaatagacaatctttgaaaaaaaataactacacatatttcatcttcctag 38938479  T
Q  195 agcaaagtcatctccaatccaaacaactttgattcatttctgttctcatatctg-aaaatggctgatgctttacttggaatcttgattcaaaacctcgga 293  Q
    ||||||| |||||||||||||   ||| |||||||| ||||||||||||| ||| ||||||||||| |||||||||| |||| ||||| ||| |||||||    
T  38938480 agcaaag-catctccaatcca---aaccttgattca-ttctgttctcatacctgcaaaatggctgacgctttacttgaaatcctgattgaaaccctcgga 38938574  T
Q  294 tcatttgtacaagaggagtttgctacctatttgggtgttggagaattgaccca 346  Q
     |||||||   ||||||| |||| |||||||||||||||||||| ||||||||    
T  38938575 acatttgttggagaggagcttgcaacctatttgggtgttggagagttgaccca 38938627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 184 - 346
Target Start/End: Original strand, 7052370 - 7052531
Alignment:
Q  184 catcttcctagagcaaagtcatctccaatccaaacaactttgattcatttctgttct--catatctgaaaatggctgatgctttacttggaatcttgatt 281  Q
    ||||||||||||||||||||||||||| || ||||   | ||||||||||||  ||   |||| | | |||||||||||| ||||||||||| | |||||    
T  7052370 catcttcctagagcaaagtcatctccattcaaaac---tctgattcatttcttctcatacatacccgcaaatggctgatgttttacttggaaccgtgatt 7052466  T
Q  282 caaaacctcggatcatttgtacaagaggagtttgctacctatttgggtgttggagaattgaccca 346  Q
     ||||||||||||| ||| | | ||||||| ||||  ||| ||||||||| ||||||||||||||    
T  7052467 gaaaacctcggatctttttttcgagaggagcttgcatcctttttgggtgtaggagaattgaccca 7052531  T

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Target: chr8 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 222 - 346
Target Start/End: Complemental strand, 13379112 - 13378987
Alignment:
Q  222 tttgattcatttctgttctcatatctg-aaaatggctgatgctttacttggaatcttgattcaaaacctcggatcatttgtacaagaggagtttgctacc 320  Q
    ||||||||||||||||| ||||| ||| ||||||||||||| |||||||||||   ||||||||||||| ||||| ||||| ||| | ||| || | |||    
T  13379112 tttgattcatttctgttatcatacctgcaaaatggctgatgttttacttggaactgtgattcaaaaccttggatcttttgttcaacaagagctttcaacc 13379013  T
Q  321 tatttgggtgttggagaattgaccca 346  Q
    | ||||||||||||||||||||||||    
T  13379012 tttttgggtgttggagaattgaccca 13378987  T

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Target: scaffold0511 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0511
Description:

Target: scaffold0511; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 219 - 348
Target Start/End: Complemental strand, 10377 - 10247
Alignment:
Q  219 aactttgattcatttctgttctcatatctg-aaaatggctgatgctttacttggaatcttgattcaaaacctcggatcatttgtacaagaggagtttgct 317  Q
    ||||||||||||||||||||| | || ||| |||||| |||||| |||||||||||   ||||||||| ||||||||| ||||| | ||||||| || |     
T  10377 aactttgattcatttctgttcacttacctgcaaaatgactgatgttttacttggaactgtgattcaaatcctcggatcttttgttcgagaggagctttcg 10278  T
Q  318 acctatttgggtgttggagaattgacccaaa 348  Q
    |||| ||||||||||||||||||||| ||||    
T  10277 acctttttgggtgttggagaattgacacaaa 10247  T

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Target: scaffold0230 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0230
Description:

Target: scaffold0230; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 219 - 348
Target Start/End: Complemental strand, 5697 - 5567
Alignment:
Q  219 aactttgattcatttctgttctcatatctg-aaaatggctgatgctttacttggaatcttgattcaaaacctcggatcatttgtacaagaggagtttgct 317  Q
    ||||||||||||||||||||| | || ||| |||||| |||||| |||||||||||   ||||||||| ||||||||| ||||| | ||||||| || |     
T  5697 aactttgattcatttctgttcacttacctgcaaaatgactgatgttttacttggaactgtgattcaaatcctcggatcttttgttcgagaggagctttcg 5598  T
Q  318 acctatttgggtgttggagaattgacccaaa 348  Q
    |||| ||||||||||||||||||||| ||||    
T  5597 acctttttgggtgttggagaattgacacaaa 5567  T

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Target: chr5 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 164 - 259
Target Start/End: Original strand, 11983113 - 11983206
Alignment:
Q  164 acaaataacaactcatatttcatcttcctagagcaaagtcatctccaatccaaacaactttgattcatttctgttctcatatctg-aaaatggctga 259  Q
    |||||||| ||| |||||||||||||| ||||||||||||||||||||||||||| ||   |||||||||||||||| ||| ||| |||||||||||    
T  11983113 acaaataataacgcatatttcatcttcatagagcaaagtcatctccaatccaaaccac---gattcatttctgttctgatacctgcaaaatggctga 11983206  T

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Target: scaffold0144 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0144
Description:

Target: scaffold0144; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 219 - 344
Target Start/End: Complemental strand, 38504 - 38379
Alignment:
Q  219 aactttgattcatttctgttctcatatctgaaaatggctgatgctttacttggaatcttgattcaaaacctcggatcatttgtacaagaggagtttgcta 318  Q
    ||||||||||||| ||||||||||| | |||||||||| || |||||||||| |||| ||||| |||| ||||||   ||||| | ||| ||| ||||      
T  38504 aactttgattcatatctgttctcatttttgaaaatggccgacgctttacttgcaatcgtgattgaaaatctcggacattttgttcgagatgagcttgcat 38405  T
Q  319 cctatttgggtgttggagaattgacc 344  Q
    ||| ||||||||||||||||||||||    
T  38404 cctttttgggtgttggagaattgacc 38379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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