View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9192_low_12 (Length: 288)

Name: NF9192_low_12
Description: NF9192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9192_low_12
NF9192_low_12
[»] chr4 (19 HSPs)
chr4 (9-273)||(32906150-32906414)
chr4 (161-273)||(42009623-42009735)
chr4 (166-257)||(35422391-35422482)
chr4 (167-273)||(47519266-47519373)
chr4 (166-267)||(2392625-2392726)
chr4 (191-273)||(14124199-14124281)
chr4 (168-273)||(23066038-23066143)
chr4 (167-273)||(34341395-34341501)
chr4 (197-273)||(24238785-24238861)
chr4 (191-273)||(53654292-53654374)
chr4 (190-263)||(35827797-35827870)
chr4 (197-273)||(21865193-21865268)
chr4 (197-273)||(21921054-21921129)
chr4 (167-213)||(21621803-21621850)
chr4 (166-273)||(33395307-33395414)
chr4 (227-273)||(40255228-40255274)
chr4 (197-262)||(52837991-52838056)
chr4 (182-273)||(37858192-37858284)
chr4 (197-273)||(41260037-41260113)
[»] chr6 (8 HSPs)
chr6 (157-273)||(7592689-7592805)
chr6 (191-273)||(29694302-29694384)
chr6 (166-271)||(28985474-28985577)
chr6 (166-273)||(2838972-2839078)
chr6 (166-273)||(2676110-2676216)
chr6 (215-273)||(31490373-31490431)
chr6 (168-256)||(18592746-18592835)
chr6 (166-273)||(23131476-23131583)
[»] chr2 (11 HSPs)
chr2 (166-273)||(8793780-8793888)
chr2 (172-273)||(31645409-31645510)
chr2 (190-273)||(38373369-38373452)
chr2 (149-273)||(31915079-31915203)
chr2 (192-246)||(18223344-18223399)
chr2 (166-224)||(34787874-34787932)
chr2 (166-273)||(16209851-16209958)
chr2 (197-271)||(30829961-30830035)
chr2 (189-267)||(35005216-35005294)
chr2 (166-273)||(29140144-29140252)
chr2 (213-273)||(31836912-31836971)
[»] chr5 (15 HSPs)
chr5 (166-273)||(33085249-33085356)
chr5 (167-273)||(4858039-4858144)
chr5 (166-273)||(35626560-35626667)
chr5 (166-256)||(17317343-17317433)
chr5 (187-257)||(10511091-10511161)
chr5 (168-273)||(42486366-42486471)
chr5 (180-273)||(1638010-1638102)
chr5 (192-273)||(14157028-14157109)
chr5 (189-273)||(42641110-42641194)
chr5 (154-257)||(25254889-25254992)
chr5 (154-257)||(25318679-25318782)
chr5 (191-273)||(10418595-10418677)
chr5 (211-264)||(3662479-3662532)
chr5 (189-258)||(25731213-25731282)
chr5 (197-257)||(34023289-34023349)
[»] chr3 (13 HSPs)
chr3 (185-273)||(42426200-42426284)
chr3 (167-273)||(8365210-8365316)
chr3 (185-273)||(51312924-51313012)
chr3 (166-264)||(41632026-41632124)
chr3 (176-273)||(39047656-39047753)
chr3 (192-273)||(44765307-44765388)
chr3 (185-273)||(3432603-3432691)
chr3 (166-256)||(38181519-38181609)
chr3 (183-258)||(47510736-47510811)
chr3 (189-252)||(4195386-4195448)
chr3 (197-258)||(32375270-32375331)
chr3 (167-211)||(24301955-24301999)
chr3 (206-262)||(25118635-25118691)
[»] scaffold0042 (1 HSPs)
scaffold0042 (166-273)||(83571-83678)
[»] chr1 (14 HSPs)
chr1 (179-273)||(16516830-16516924)
chr1 (185-273)||(46536641-46536729)
chr1 (168-245)||(4064117-4064194)
chr1 (189-273)||(8772434-8772518)
chr1 (189-273)||(12188630-12188714)
chr1 (190-273)||(4449044-4449127)
chr1 (166-257)||(7330516-7330607)
chr1 (191-262)||(44603626-44603697)
chr1 (236-267)||(52426245-52426276)
chr1 (192-273)||(8376326-8376410)
chr1 (215-273)||(48615464-48615522)
chr1 (231-273)||(50014206-50014248)
chr1 (192-252)||(15330845-15330905)
chr1 (213-273)||(33673502-33673562)
[»] chr7 (12 HSPs)
chr7 (166-273)||(32956496-32956603)
chr7 (198-264)||(40244832-40244898)
chr7 (192-273)||(7833560-7833641)
chr7 (166-267)||(48983048-48983148)
chr7 (189-257)||(31245279-31245347)
chr7 (183-273)||(40019507-40019596)
chr7 (185-267)||(46288859-46288941)
chr7 (185-273)||(31860317-31860405)
chr7 (166-273)||(44377298-44377410)
chr7 (166-273)||(44386165-44386277)
chr7 (191-273)||(22680724-22680806)
chr7 (224-273)||(41104093-41104141)
[»] chr8 (6 HSPs)
chr8 (161-262)||(31505500-31505600)
chr8 (166-273)||(20164461-20164572)
chr8 (197-273)||(41168661-41168738)
chr8 (166-273)||(3670513-3670621)
chr8 (236-267)||(3423786-3423817)
chr8 (206-273)||(43645380-43645447)
[»] scaffold0007 (1 HSPs)
scaffold0007 (197-273)||(246547-246623)


Alignment Details
Target: chr4 (Bit Score: 257; Significance: 1e-143; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 9 - 273
Target Start/End: Complemental strand, 32906414 - 32906150
Alignment:
Q  9 agattatactatgatgggatattcgagaaaatattcaaacagatgagaaagttaaaaagtaaaatgataaggaagtcgaatgttcgattccaaccctact 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  32906414 agattatactatgatgggatattcgagaaaatattcaaacagatgagaaagttaaaaaggaaaatgataaggaagtcgaatgttcgattccaaccctact 32906315  T
Q  109 atgatactaatgatactaatattttccgttaaaataagagagatatttaagaaaagcagaatgctaatgagtgtctttgaggcattgattaaagtgttaa 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  32906314 atgatactaatgatactaatattttccgttaaaataagagagatatttaagaaaagcagaatgctattgagtgtctttgaggcattgattaaagtgttaa 32906215  T
Q  209 aattagtaagtttgcattaaaaaatgttgtaattattgctaagacaaaaataaaaacttatattt 273  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32906214 aattagtaagtttgcattaaaaaatgttgtaattattgctaagacaaaaataaaaacttatattt 32906150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 161 - 273
Target Start/End: Original strand, 42009623 - 42009735
Alignment:
Q  161 aaagcagaatgctaatgagtgtctttgaggcattgattaaagtgttaaaattagtaagtttgcattaaaaaatgttgtaattattgctaagacaaaaata 260  Q
    |||| |||||| |||||| |||| ||||| ||||  ||||||||||||||||| |||||||| |||||||| |  |||||||||| ||||||||||||||    
T  42009623 aaagaagaatgttaatgaatgtccttgagacattagttaaagtgttaaaattaataagtttgaattaaaaagttgtgtaattattactaagacaaaaata 42009722  T
Q  261 aaaacttatattt 273  Q
    |||| ||||||||    
T  42009723 aaaatttatattt 42009735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 166 - 257
Target Start/End: Original strand, 35422391 - 35422482
Alignment:
Q  166 agaatgctaatgagtgtctttgaggcattgattaaagtgttaaaattagtaagtttgcattaaaaaatgttgtaattattgctaagacaaaa 257  Q
    |||||| ||| || |||||||| ||||| | |||||||||||||||||||||||||||||||||||||  ||||||||||| ||||||||||    
T  35422391 agaatgttaacgaatgtctttggggcatcggttaaagtgttaaaattagtaagtttgcattaaaaaatagtgtaattattgataagacaaaa 35422482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 167 - 273
Target Start/End: Complemental strand, 47519373 - 47519266
Alignment:
Q  167 gaatgctaatgagtgtctttgaggcattgattaaagtgttaaaattagtaagtttgcattaaaaaatgttgtaattattgct-aagacaaaaataaaaac 265  Q
    ||||| ||||||||||  ||| ||||||| ||||||||||||||||||||||||||||||||||| |  ||||||||||| | || |||||| |||||||    
T  47519373 gaatgttaatgagtgttcttggggcattggttaaagtgttaaaattagtaagtttgcattaaaaagttgtgtaattattgataaaaacaaaattaaaaac 47519274  T
Q  266 ttatattt 273  Q
    ||||||||    
T  47519273 ttatattt 47519266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 166 - 267
Target Start/End: Complemental strand, 2392726 - 2392625
Alignment:
Q  166 agaatgctaatgagtgtctttgaggcattgattaaagtgttaaaattagtaagtttgcattaaaaaatgttgtaattattgctaagacaaaaataaaaac 265  Q
    |||||||||||||||||| ||  || |||| |||||||||||||||| ||||||| |||| ||||| || |||| ||||||| ||||||||| |||||||    
T  2392726 agaatgctaatgagtgtccttagggaattggttaaagtgttaaaatttgtaagttagcataaaaaagtggtgtagttattgccaagacaaaagtaaaaac 2392627  T
Q  266 tt 267  Q
    ||    
T  2392626 tt 2392625  T

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Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 191 - 273
Target Start/End: Original strand, 14124199 - 14124281
Alignment:
Q  191 cattgattaaagtgttaaaattagtaagtttgcattaaaaaatgttgtaattattgctaagacaaaaataaaaacttatattt 273  Q
    ||||| ||||||| ||||||| ||||| |||||||  ||||||| ||||||| ||||||||| |||| |||||||||||||||    
T  14124199 cattggttaaagtattaaaataagtaaatttgcatcgaaaaatggtgtaatttttgctaagaaaaaagtaaaaacttatattt 14124281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 168 - 273
Target Start/End: Complemental strand, 23066143 - 23066038
Alignment:
Q  168 aatgctaatgagtgtctttgaggcattgattaaagtgttaaaattagtaagtttgcattaaaaaatgttgtaattattgctaagacaaaaataaaaactt 267  Q
    |||| ||||||||||||||||| |||||||||||||| ||  |  |||| |||||||| |||||  | |||| |||||  ||||||||||||||||||||    
T  23066143 aatgttaatgagtgtctttgagacattgattaaagtgctatgaaaagtatgtttgcatcaaaaagcgatgtacttatttttaagacaaaaataaaaactt 23066044  T
Q  268 atattt 273  Q
     |||||    
T  23066043 gtattt 23066038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 167 - 273
Target Start/End: Original strand, 34341395 - 34341501
Alignment:
Q  167 gaatgctaatgagtgtctttgaggcattgattaaagtgttaaaattagtaagtttgcattaaaaaatgttgtaattattgctaagacaaaaataaaaact 266  Q
    ||||||||| ||||||  ||||| ||||| |||||||  | ||||  ||||||||| |||||||| |  |||||||||||||||||||||| ||||| ||    
T  34341395 gaatgctaacgagtgttcttgagacattggttaaagttctcaaatatgtaagtttgtattaaaaagttgtgtaattattgctaagacaaaagtaaaatct 34341494  T
Q  267 tatattt 273  Q
    | |||||    
T  34341495 tgtattt 34341501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 197 - 273
Target Start/End: Original strand, 24238785 - 24238861
Alignment:
Q  197 ttaaagtgttaaaattagtaagtttgcattaaaaaatgttgtaattattgctaagacaaaaataaaaacttatattt 273  Q
    ||||||||||||||| ||||| |||| |||||||| |  | ||||||||| | |||||||||||||| |||||||||    
T  24238785 ttaaagtgttaaaatgagtaaatttgtattaaaaagtaatataattattgttgagacaaaaataaaagcttatattt 24238861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 191 - 273
Target Start/End: Original strand, 53654292 - 53654374
Alignment:
Q  191 cattgattaaagtgttaaaattagtaagtttgcattaaaaaatgttgtaattattgctaagacaaaaataaaaacttatattt 273  Q
    ||||| ||||||| ||||||| |||| ||||||||  ||||||| |||||||||||| |||| |||| |||| |||| |||||    
T  53654292 cattggttaaagtattaaaataagtatgtttgcatcgaaaaatggtgtaattattgcgaagaaaaaagtaaagacttgtattt 53654374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 190 - 263
Target Start/End: Complemental strand, 35827870 - 35827797
Alignment:
Q  190 gcattgattaaagtgttaaaattagtaagtttgcattaaaaaatgttgtaattattgctaagacaaaaataaaa 263  Q
    |||||| ||||| | ||||||| ||||||||||| |  ||||||| ||||||||||| ||||| ||||||||||    
T  35827870 gcattggttaaaatattaaaataagtaagtttgcttcgaaaaatgatgtaattattgttaagaaaaaaataaaa 35827797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 197 - 273
Target Start/End: Original strand, 21865193 - 21865268
Alignment:
Q  197 ttaaagtgttaaaattagtaagtttgcattaaaaaatgttgtaattattgctaagacaaaaataaaaacttatattt 273  Q
    ||||||| ||||||| |||||||||||||  ||||||| |||||| |||||||||| |||| |||||| || |||||    
T  21865193 ttaaagttttaaaataagtaagtttgcatcgaaaaatggtgtaatcattgctaaga-aaaagtaaaaatttgtattt 21865268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 197 - 273
Target Start/End: Original strand, 21921054 - 21921129
Alignment:
Q  197 ttaaagtgttaaaattagtaagtttgcattaaaaaatgttgtaattattgctaagacaaaaataaaaacttatattt 273  Q
    ||||||| ||||||| |||||||||||||  ||||||| |||||| |||||||||| |||| |||||| || |||||    
T  21921054 ttaaagttttaaaataagtaagtttgcatcgaaaaatggtgtaatcattgctaaga-aaaagtaaaaatttgtattt 21921129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 167 - 213
Target Start/End: Original strand, 21621803 - 21621850
Alignment:
Q  167 gaatgctaatgagtgtct-ttgaggcattgattaaagtgttaaaatta 213  Q
    ||||||||||||||| |  |||||||||||||||||||||||||||||    
T  21621803 gaatgctaatgagtgccccttgaggcattgattaaagtgttaaaatta 21621850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 166 - 273
Target Start/End: Original strand, 33395307 - 33395414
Alignment:
Q  166 agaatgctaatgagtgtctttgaggcattgattaaagtgttaaaattagtaagtttgcattaaaaaatgttgtaattattgctaagacaaaaataaaaac 265  Q
    ||||||||||  | || ||||| | ||||| ||||||| ||||||| ||||||||| ||| ||||| || | ||||||||||||||| | || |||| ||    
T  33395307 agaatgctaacaattgcctttgggacattggttaaagtattaaaatgagtaagtttacatcaaaaagtggtataattattgctaagaaataagtaaagac 33395406  T
Q  266 ttatattt 273  Q
    || |||||    
T  33395407 ttgtattt 33395414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 227 - 273
Target Start/End: Complemental strand, 40255274 - 40255228
Alignment:
Q  227 aaaaaatgttgtaattattgctaagacaaaaataaaaacttatattt 273  Q
    |||||||| ||||||||||||||| ||||||||||||| || |||||    
T  40255274 aaaaaatgatgtaattattgctaaaacaaaaataaaaatttgtattt 40255228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 262
Target Start/End: Complemental strand, 52838056 - 52837991
Alignment:
Q  197 ttaaagtgttaaaattagtaagtttgcattaaaaaatgttgtaattattgctaagacaaaaataaa 262  Q
    ||||||| ||||||| |||||||||||||  ||||||| | ||||||||| ||||| |||| ||||    
T  52838056 ttaaagtattaaaataagtaagtttgcatcgaaaaatggtataattattgttaagaaaaaagtaaa 52837991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 273
Target Start/End: Original strand, 37858192 - 37858284
Alignment:
Q  182 tctttgaggcattgattaaagtgtta-aaattagtaagtttgcattaaaaaatgttgtaattattgctaagacaaaaataaaaacttatattt 273  Q
    |||||| ||||||| |||||||  || |||| || ||||||||||  |||| || | ||||||||||||||| |||| ||||||||| |||||    
T  37858192 tctttggggcattggttaaagtactataaataaggaagtttgcatcgaaaagtgatttaattattgctaagaaaaaagtaaaaacttgtattt 37858284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 273
Target Start/End: Complemental strand, 41260113 - 41260037
Alignment:
Q  197 ttaaagtgttaaaattagtaagtttgcattaaaaaatgttgtaattattgctaagacaaaaataaaaacttatattt 273  Q
    ||||||| ||||||| |||||||||||||  |||| || |||||| |||| ||| | ||||||||| |||| |||||    
T  41260113 ttaaagtattaaaataagtaagtttgcatcgaaaagtggtgtaatcattgataaaaaaaaaataaagacttgtattt 41260037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 8e-24; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 157 - 273
Target Start/End: Original strand, 7592689 - 7592805
Alignment:
Q  157 aagaaaagcagaatgctaatgagtgtctttgaggcattgattaaagtgttaaaattagtaagtttgcattaaaaaatgttgtaattattgctaagacaaa 256  Q
    |||||||  |||||| ||| ||||||||||||| ||||||||||||| ||||||| |||||||||  |||||||| || |||||||||||||| |||||     
T  7592689 aagaaaatgagaatgttaaagagtgtctttgagacattgattaaagtattaaaataagtaagtttaaattaaaaagtgatgtaattattgctaggacaag 7592788  T
Q  257 aataaaaacttatattt 273  Q
    | ||||||||| |||||    
T  7592789 agtaaaaacttgtattt 7592805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 191 - 273
Target Start/End: Original strand, 29694302 - 29694384
Alignment:
Q  191 cattgattaaagtgttaaaattagtaagtttgcattaaaaaatgttgtaattattgctaagacaaaaataaaaacttatattt 273  Q
    ||||| |||||||  |||||| |||||||||||||| |||| || ||||||||||| |||||||||||||||||||| |||||    
T  29694302 cattggttaaagtactaaaataagtaagtttgcattgaaaagtgatgtaattattgttaagacaaaaataaaaacttgtattt 29694384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 166 - 271
Target Start/End: Complemental strand, 28985577 - 28985474
Alignment:
Q  166 agaatgctaatgagtgtctttgaggcattgattaaagtgttaaaattagtaagtttgcattaaaaaatgttgtaattattgctaagacaaaaataaaaac 265  Q
    |||| ||||||||||| | |||| |||||| |||| || ||||||| ||||||||||||| ||||  || ||||||||||||| ||||||||||||||||    
T  28985577 agaaggctaatgagtgcccttgatgcattggttaa-gtattaaaataagtaagtttgcatcaaaag-tgatgtaattattgctgagacaaaaataaaaac 28985480  T
Q  266 ttatat 271  Q
    ||||||    
T  28985479 ttatat 28985474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 166 - 273
Target Start/End: Original strand, 2838972 - 2839078
Alignment:
Q  166 agaatgctaatgagtgtctttgaggcattgattaaagtgttaaaattagtaagtttgcattaaaaaatgttgtaattattgctaagacaaaaataaaaac 265  Q
    |||||||||||||||| |||||  |||||| ||||  | ||||||||||||||||||||| ||||| || |||| ||||||| || |||||| ||||||     
T  2838972 agaatgctaatgagtgcctttggagcattggttaagttcttaaaattagtaagtttgcatcaaaaagtggtgtagttattgc-aaaacaaaagtaaaaat 2839070  T
Q  266 ttatattt 273  Q
    ||||||||    
T  2839071 ttatattt 2839078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 166 - 273
Target Start/End: Original strand, 2676110 - 2676216
Alignment:
Q  166 agaatgctaatgagtgtctttgaggcattgattaaagtgttaaaattagtaagtttgcattaaaaaatgttgtaattattgctaagacaaaaataaaaac 265  Q
    |||||| ||| |||||| || |||| |||| ||||| |||||||||||||||||||| || |||||||  |||| |||||||||||| || | ||||||     
T  2676110 agaatgttaacgagtgt-ttcgaggtattggttaaaatgttaaaattagtaagtttgtataaaaaaattatgtagttattgctaagataatagtaaaaaa 2676208  T
Q  266 ttatattt 273  Q
    ||||||||    
T  2676209 ttatattt 2676216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 215 - 273
Target Start/End: Original strand, 31490373 - 31490431
Alignment:
Q  215 taagtttgcattaaaaaatgttgtaattattgctaagacaaaaataaaaacttatattt 273  Q
    |||||||||| ||||||||| ||||||||||  | |||||||| |||||||||||||||    
T  31490373 taagtttgcaataaaaaatggtgtaattattaattagacaaaagtaaaaacttatattt 31490431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 168 - 256
Target Start/End: Complemental strand, 18592835 - 18592746
Alignment:
Q  168 aatgctaatgagtgtctttgaggcattgattaaagtgttaaaattagtaagtttgcat-taaaaaatgttgtaattattgctaagacaaa 256  Q
    |||||||||||||| |||||  | ||||||||||||  |||||| |||||||||||||  |||||||  ||||||||||| ||| |||||    
T  18592835 aatgctaatgagtgcctttggagtattgattaaagttctaaaataagtaagtttgcataaaaaaaatagtgtaattattgataaaacaaa 18592746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 166 - 273
Target Start/End: Complemental strand, 23131583 - 23131476
Alignment:
Q  166 agaatgctaatgagtgtctttgaggcattgattaaagtgttaaaattagtaagtttgcattaaaaaatgttgtaattattgctaagacaaaaataaaaac 265  Q
    ||||||||||| | | || |||||  |||| |||||||  |||||| ||||| |||||| |||||| |   |||||||||||||| |||||| ||||||     
T  23131583 agaatgctaatcaatatccttgagttattggttaaagtactaaaataagtaattttgcaataaaaagttgcgtaattattgctaaaacaaaagtaaaaat 23131484  T
Q  266 ttatattt 273  Q
    ||||||||    
T  23131483 ttatattt 23131476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 8e-24; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 166 - 273
Target Start/End: Original strand, 8793780 - 8793888
Alignment:
Q  166 agaatgctaatgagtgtctttgaggcattgattaaagtgttaaaattagtaagtttgcattaaaaaa-tgttgtaattattgctaagacaaaaataaaaa 264  Q
    |||||| ||||||||| |||||||||| || |||| ||||||||||| |||||||||||| |||||| |  ||| |||||||| ||||||||||||||||    
T  8793780 agaatgttaatgagtgcctttgaggcaatggttaaggtgttaaaatttgtaagtttgcataaaaaaagtagtgtgattattgccaagacaaaaataaaaa 8793879  T
Q  265 cttatattt 273  Q
    |||||||||    
T  8793880 cttatattt 8793888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 172 - 273
Target Start/End: Original strand, 31645409 - 31645510
Alignment:
Q  172 ctaatgagtgtctttgaggcattgattaaagtgttaaaattagtaagtttgcattaaaaaatgttgtaattattgctaagacaaaaataaaaacttatat 271  Q
    |||| ||||||| || || ||||| ||||||||||||| ||| ||| |||| ||||||||||| ||||||||||| |||||||||| |||||| ||||||    
T  31645409 ctaacgagtgtccttaagacattggttaaagtgttaaatttaataaatttgtattaaaaaatggtgtaattattgataagacaaaattaaaaatttatat 31645508  T
Q  272 tt 273  Q
    ||    
T  31645509 tt 31645510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 190 - 273
Target Start/End: Complemental strand, 38373452 - 38373369
Alignment:
Q  190 gcattgattaaagtgttaaaattagtaagtttgcattaaaaaatgttgtaattattgctaagacaaaaataaaaacttatattt 273  Q
    |||||| ||||| | ||||||| ||||| |||||||  ||||||| ||||||||||||||||| |||| ||||||||| |||||    
T  38373452 gcattggttaaaatattaaaataagtaaatttgcatcgaaaaatggtgtaattattgctaagataaaagtaaaaacttgtattt 38373369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 149 - 273
Target Start/End: Complemental strand, 31915203 - 31915079
Alignment:
Q  149 agatatttaagaaaagcagaatgctaatgagtgtctttgaggcattgattaaagtgttaaaattagtaagtttgcattaaaaaatgttgtaattattgct 248  Q
    ||||||| || ||||| |||||| |||  | |||| ||| ||||||| ||||||| ||||||| |||||||||||||  |||| || |||||||||| ||    
T  31915203 agatattaaaaaaaaggagaatggtaaccattgtccttggggcattggttaaagtattaaaataagtaagtttgcatcgaaaagtggtgtaattatttct 31915104  T
Q  249 aagacaaaaataaaaacttatattt 273  Q
    | || |||| |||| |||| |||||    
T  31915103 atgaaaaaagtaaagacttgtattt 31915079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 192 - 246
Target Start/End: Original strand, 18223344 - 18223399
Alignment:
Q  192 attgattaaagtgttaaaattagtaagtttgcatt-aaaaaatgttgtaattattg 246  Q
    ||||||||||||||||||||||||| ||||||||| |||||||  |||||||||||    
T  18223344 attgattaaagtgttaaaattagtatgtttgcattgaaaaaattgtgtaattattg 18223399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 166 - 224
Target Start/End: Complemental strand, 34787932 - 34787874
Alignment:
Q  166 agaatgctaatgagtgtctttgaggcattgattaaagtgttaaaattagtaagtttgca 224  Q
    |||||||||||||||   ||| |  ||||||||||||||||||||||||||||||||||    
T  34787932 agaatgctaatgagtacttttaatacattgattaaagtgttaaaattagtaagtttgca 34787874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 166 - 273
Target Start/End: Complemental strand, 16209958 - 16209851
Alignment:
Q  166 agaatgctaatgagtgtctttgaggcattgattaaagtgttaaaattagtaagtttgcattaaaaaatgttgtaattattgctaagacaaaaataaaaac 265  Q
    |||||||||||||||||| |||  |||||| |||||||  |||||| ||||| |||  |  ||||| |  ||||| |||||||||||||||| |||| ||    
T  16209958 agaatgctaatgagtgtccttgtagcattggttaaagtactaaaataagtaactttaaaacaaaaagttgtgtaactattgctaagacaaaagtaaacac 16209859  T
Q  266 ttatattt 273  Q
    || |||||    
T  16209858 ttgtattt 16209851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 271
Target Start/End: Original strand, 30829961 - 30830035
Alignment:
Q  197 ttaaagtgttaaaattagtaagtttgcattaaaaaatgttgtaattattgctaagacaaaaataaaaacttatat 271  Q
    ||||| ||||||||||| ||| |||  |||||||| || ||||||||||| |||||||||| |  ||||||||||    
T  30829961 ttaaaatgttaaaattaataaatttatattaaaaagtggtgtaattattggtaagacaaaagttcaaacttatat 30830035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 267
Target Start/End: Original strand, 35005216 - 35005294
Alignment:
Q  189 ggcattgattaaagtgttaaaattagtaagtttgcattaaaaaatgttgtaattattgctaagacaaaaataaaaactt 267  Q
    ||||||| |||||||  |||||| |||||||||||||  |||| || |||||| |||||||||| |||| |||| ||||    
T  35005216 ggcattggttaaagtactaaaataagtaagtttgcatcgaaaagtggtgtaatcattgctaagaaaaaagtaaagactt 35005294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 166 - 273
Target Start/End: Original strand, 29140144 - 29140252
Alignment:
Q  166 agaatgctaatgagtgtctttgaggcattgattaaagtgttaaaattagtaagtttgcattaaaaaatgt-tgtaattattgctaagacaaaaataaaaa 264  Q
    ||||||| |||||||| | |||||  |||| |||||||  |||||| ||||| |||| |  ||||||  | ||||||||||||||||  |||||||||||    
T  29140144 agaatgccaatgagtgaccttgagatattggttaaagtactaaaataagtaattttgaaacaaaaaaattgtgtaattattgctaaggaaaaaataaaaa 29140243  T
Q  265 cttatattt 273  Q
    ||| |||||    
T  29140244 cttgtattt 29140252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 273
Target Start/End: Original strand, 31836912 - 31836971
Alignment:
Q  213 agtaagtttgcattaaaaaatgttgtaattattgctaagacaaaaataaaaacttatattt 273  Q
    ||||| ||||||||||||| ||| |||| ||||||||||| |||| |||||| ||||||||    
T  31836912 agtaaatttgcattaaaaattgt-gtaaatattgctaagataaaagtaaaaatttatattt 31836971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 7e-21; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 166 - 273
Target Start/End: Original strand, 33085249 - 33085356
Alignment:
Q  166 agaatgctaatgagtgtctttgaggcattgattaaagtgttaaaattagtaagtttgcattaaaaaatgttgtaattattgctaagacaaaaataaaaac 265  Q
    |||||||||||||||||| ||    ||||| |||||||||||||||||| ||||||||||  |||| || |||| ||||||||||||||||| ||||||     
T  33085249 agaatgctaatgagtgtccttagaacattggttaaagtgttaaaattagcaagtttgcatacaaaagtggtgtagttattgctaagacaaaagtaaaaat 33085348  T
Q  266 ttatattt 273  Q
    ||||||||    
T  33085349 ttatattt 33085356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 167 - 273
Target Start/End: Original strand, 4858039 - 4858144
Alignment:
Q  167 gaatgctaatgagtgtctttgaggcattgattaaagtgttaaaattagtaagtttgcattaaaaaatgttgtaattattgctaagacaaaaataaaaact 266  Q
    ||||| |||||||||| ||||  | ||||  |||| |||||||||||||||||||| |||||||| || |||||||||||||||||||||| |||||| |    
T  4858039 gaatgttaatgagtgtttttggagtattggataaaatgttaaaattagtaagtttgtattaaaaa-tgatgtaattattgctaagacaaaagtaaaaatt 4858137  T
Q  267 tatattt 273  Q
    |||||||    
T  4858138 tatattt 4858144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 166 - 273
Target Start/End: Original strand, 35626560 - 35626667
Alignment:
Q  166 agaatgctaatgagtgtctttgaggcattgattaaagtgttaaaattagtaagtttgcattaaaaaatgttgtaattattgctaagacaaaaataaaaac 265  Q
    |||||| ||||||||| ||||||  ||| | |||| |||||||||||||||| ||||||| ||||| |  ||  ||||||| |||||||||| |||||||    
T  35626560 agaatgttaatgagtgcctttgatacatgggttaaggtgttaaaattagtaaatttgcataaaaaagtagtgcgattattggtaagacaaaagtaaaaac 35626659  T
Q  266 ttatattt 273  Q
    ||||||||    
T  35626660 ttatattt 35626667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 166 - 256
Target Start/End: Original strand, 17317343 - 17317433
Alignment:
Q  166 agaatgctaatgagtgtctttgaggcattgattaaagtgttaaaattagtaagtttgcattaaaaaatgttgtaattattgctaagacaaa 256  Q
    |||||| ||| ||||||| ||||||||||| ||||||||||||||||| ||| ||||||| ||||| || ||| ||||||  |||||||||    
T  17317343 agaatgttaacgagtgtccttgaggcattggttaaagtgttaaaattaataaatttgcatcaaaaagtggtgtgattattattaagacaaa 17317433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 187 - 257
Target Start/End: Original strand, 10511091 - 10511161
Alignment:
Q  187 gaggcattgattaaagtgttaaaattagtaagtttgcattaaaaaatgttgtaattattgctaagacaaaa 257  Q
    ||||||||| |||||||  |||||| ||||| |||||||| ||||||| ||||||||||||||||| ||||    
T  10511091 gaggcattggttaaagtagtaaaatgagtaactttgcattgaaaaatggtgtaattattgctaagaaaaaa 10511161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 168 - 273
Target Start/End: Original strand, 42486366 - 42486471
Alignment:
Q  168 aatgctaatgagtgtctttgaggcattgattaaagtgttaaaattagtaagtttgcattaaaaaatgttgtaattattgctaagacaaaaataaaaactt 267  Q
    |||| |||||||||||||| |  |||||||||||||||||||||||||||  ||  |||||||| ||   ||||||||| || || |||| |||||||||    
T  42486366 aatgttaatgagtgtctttaaaacattgattaaagtgttaaaattagtaaagttttattaaaaagtggcttaattattgataggataaaattaaaaactt 42486465  T
Q  268 atattt 273  Q
    | ||||    
T  42486466 acattt 42486471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 180 - 273
Target Start/End: Complemental strand, 1638102 - 1638010
Alignment:
Q  180 tgtctttgaggcattgattaaagtgttaaaattagtaagtttgcattaaaaaatgttgtaattattgctaagacaaaaataaaaacttatattt 273  Q
    |||||||| ||||||||||||||   |||||| | ||||||||||| ||||| |  ||||||||||||||||| |||| |||||| || |||||    
T  1638102 tgtctttg-ggcattgattaaagaactaaaataaataagtttgcatcaaaaagttgtgtaattattgctaagaaaaaagtaaaaatttgtattt 1638010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 192 - 273
Target Start/End: Complemental strand, 14157109 - 14157028
Alignment:
Q  192 attgattaaagtgttaaaattagtaagtttgcattaaaaaatgttgtaattattgctaagacaaaaataaaaacttatattt 273  Q
    |||| |||||||  |||||| ||||||||||||| || || || ||||||||||| |||||||||| |||||| || |||||    
T  14157109 attggttaaagttgtaaaataagtaagtttgcatcaataagtgatgtaattattgataagacaaaagtaaaaatttgtattt 14157028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 189 - 273
Target Start/End: Original strand, 42641110 - 42641194
Alignment:
Q  189 ggcattgattaaagtgttaaaattagtaagtttgcattaaaaaatgttgtaattattgctaagacaaaaataaaaacttatattt 273  Q
    ||||||| |||||||  |||||| |||||||||||||  ||||||| |||||| |||| ||||| |||| |||| |||| |||||    
T  42641110 ggcattggttaaagtactaaaataagtaagtttgcatcgaaaaatggtgtaatcattgataagaaaaaagtaaagacttgtattt 42641194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 154 - 257
Target Start/End: Complemental strand, 25254992 - 25254889
Alignment:
Q  154 tttaagaaaagcagaatgctaatgagtgtctttgaggcattgattaaagtgttaaaattagtaagtttgcattaaaaaatgttgtaattattgctaagac 253  Q
    ||||||| ||| |||||| ||||||||  | ||||  ||| | |||| ||||||||||||||||||||| || ||||| |  ||| ||||||| ||||||    
T  25254992 tttaagataagaagaatgttaatgagtacccttgaaacataggttaacgtgttaaaattagtaagtttgtataaaaaattagtgtgattattgttaagac 25254893  T
Q  254 aaaa 257  Q
    ||||    
T  25254892 aaaa 25254889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 154 - 257
Target Start/End: Complemental strand, 25318782 - 25318679
Alignment:
Q  154 tttaagaaaagcagaatgctaatgagtgtctttgaggcattgattaaagtgttaaaattagtaagtttgcattaaaaaatgttgtaattattgctaagac 253  Q
    ||||||| ||| |||||| ||||||||  | ||||  ||| | |||| ||||||||||||||||||||| || ||||| |  ||| ||||||| ||||||    
T  25318782 tttaagataagaagaatgttaatgagtacccttgaaacataggttaacgtgttaaaattagtaagtttgtataaaaaattagtgtgattattgttaagac 25318683  T
Q  254 aaaa 257  Q
    ||||    
T  25318682 aaaa 25318679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 191 - 273
Target Start/End: Original strand, 10418595 - 10418677
Alignment:
Q  191 cattgattaaagtgttaaaattagtaagtttgcattaaaaaatgttgtaattattgctaagacaaaaataaaaacttatattt 273  Q
    |||| |||||||| ||||||| ||||| |||| | |||||  |  ||||||||||| ||| |||||||||||||||| |||||    
T  10418595 cattaattaaagtattaaaataagtaactttgaaataaaatgttgtgtaattattgttaaaacaaaaataaaaacttgtattt 10418677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 264
Target Start/End: Original strand, 3662479 - 3662532
Alignment:
Q  211 ttagtaagtttgcattaaaaaatgttgtaattattgctaagacaaaaataaaaa 264  Q
    |||||||||||| || |||||||| |||| || ||| |||||||||||||||||    
T  3662479 ttagtaagtttgaataaaaaaatggtgtagtttttgttaagacaaaaataaaaa 3662532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 258
Target Start/End: Original strand, 25731213 - 25731282
Alignment:
Q  189 ggcattgattaaagtgttaaaattagtaagtttgcattaaaaaatgttgtaattattgctaagacaaaaa 258  Q
    ||||||| |||||||  |||||| |||||||||||||  |||| |  ||||||||||||||||| |||||    
T  25731213 ggcattggttaaagtactaaaataagtaagtttgcatagaaaagttgtgtaattattgctaagaaaaaaa 25731282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 257
Target Start/End: Complemental strand, 34023349 - 34023289
Alignment:
Q  197 ttaaagtgttaaaattagtaagtttgcattaaaaaatgttgtaattattgctaagacaaaa 257  Q
    |||||||  |||||| | |||||||| |||||||| || | ||||||||||||||||||||    
T  34023349 ttaaagttctaaaataattaagtttgtattaaaaagtggtataattattgctaagacaaaa 34023289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 7e-21; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 185 - 273
Target Start/End: Original strand, 42426200 - 42426284
Alignment:
Q  185 ttgaggcattgattaaagtgttaaaattagtaagtttgcattaaaaaatgttgtaattattgctaagacaaaaataaaaacttatattt 273  Q
    ||||| |||||||||||||||||||||    |||||||||| ||||| || ||||||||||| ||||||||||||||||||||||||||    
T  42426200 ttgagacattgattaaagtgttaaaat----aagtttgcataaaaaagtggtgtaattattgttaagacaaaaataaaaacttatattt 42426284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 167 - 273
Target Start/End: Original strand, 8365210 - 8365316
Alignment:
Q  167 gaatgctaatgagtgtctttgaggcattgattaaagtgttaaaattagtaagtttgcattaaaaaatgttgtaattattgctaagacaaaaataaaaact 266  Q
    ||||||||| || || | ||| || |||| ||||||||||||||||||||||||| || ||||||||| ||||||| ||  | |||||||| ||||||||    
T  8365210 gaatgctaacgaatgcccttggggtattggttaaagtgttaaaattagtaagttttcaataaaaaatggtgtaattttttattagacaaaactaaaaact 8365309  T
Q  267 tatattt 273  Q
    |||||||    
T  8365310 tatattt 8365316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 185 - 273
Target Start/End: Complemental strand, 51313012 - 51312924
Alignment:
Q  185 ttgaggcattgattaaagtgttaaaattagtaagtttgcattaaaaaatgttgtaattattgctaagacaaaaataaaaacttatattt 273  Q
    |||| |||||| |||| |||||||||||||||||||||||| ||||| || | | |||||| | ||||||||||||||| |||||||||    
T  51313012 ttgaagcattggttaatgtgttaaaattagtaagtttgcatcaaaaagtggtatgattattaccaagacaaaaataaaagcttatattt 51312924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 166 - 264
Target Start/End: Complemental strand, 41632124 - 41632026
Alignment:
Q  166 agaatgctaatgagtgtctttgaggcattgattaaagtgttaaaattagtaagtttgcattaaaaaatgttgtaattattgctaagacaaaaataaaaa 264  Q
    |||||| ||||||||||  ||||| ||| ||||||| |  |||||| || ||||||||| ||||||||  |||||||||| ||||||||||||||||||    
T  41632124 agaatgataatgagtgttcttgagacatcgattaaaattctaaaataagcaagtttgcaataaaaaatagtgtaattattactaagacaaaaataaaaa 41632026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 176 - 273
Target Start/End: Complemental strand, 39047753 - 39047656
Alignment:
Q  176 tgagtgtctttgaggcattgattaaagtgttaaaattagtaagtttgcattaaaaaatgttgtaattattgctaagacaaaaataaaaacttatattt 273  Q
    |||||||| |||| ||| || |||| |||||||||||||||||||||||||||||| || | |  ||||| ||||||||||| |||||  ||||||||    
T  39047753 tgagtgtccttgaagcagtggttaaggtgttaaaattagtaagtttgcattaaaaagtggtatggttattactaagacaaaagtaaaagtttatattt 39047656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 192 - 273
Target Start/End: Complemental strand, 44765388 - 44765307
Alignment:
Q  192 attgattaaagtgttaaaattagtaagtttgcattaaaaaatgttgtaattattgctaagacaaaaataaaaacttatattt 273  Q
    |||||||||||| ||||||| |||||||||||||| |||| || ||||||||||||||||| | || |||| |||| |||||    
T  44765388 attgattaaagtattaaaataagtaagtttgcattgaaaagtggtgtaattattgctaagaaataagtaaagacttgtattt 44765307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 185 - 273
Target Start/End: Original strand, 3432603 - 3432691
Alignment:
Q  185 ttgaggcattgattaaagtgttaaaattagtaagtttgcattaaaaaatgttgtaattattgctaagacaaaaataaaaacttatattt 273  Q
    |||||| |||| |||||||  |||||| | ||||||||||| |||||||| |||||||||||||||||  ||| |||| ||||||||||    
T  3432603 ttgaggtattggttaaagtactaaaataaataagtttgcatcaaaaaatgatgtaattattgctaagaacaaagtaaacacttatattt 3432691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 166 - 256
Target Start/End: Original strand, 38181519 - 38181609
Alignment:
Q  166 agaatgctaatgagtgtctttgaggcattgattaaagtgttaaaattagtaagtttgcattaaaaaatgttgtaattattgctaagacaaa 256  Q
    |||||| ||||||||  | |||||  |||| ||||||||||||||||||| | ||||||| ||||| || ||| |||||||||||||||||    
T  38181519 agaatgttaatgagttcccttgagatattggttaaagtgttaaaattagttattttgcatcaaaaagtggtgtgattattgctaagacaaa 38181609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 183 - 258
Target Start/End: Original strand, 47510736 - 47510811
Alignment:
Q  183 ctttgaggcattgattaaagtgttaaaattagtaagtttgcattaaaaaatgttgtaattattgctaagacaaaaa 258  Q
    ||||| |||||||||||||||  |||||| |||||||||| ||  ||||||| ||||||||||| ||||| |||||    
T  47510736 ctttggggcattgattaaagtactaaaataagtaagtttgtatcgaaaaatggtgtaattattgttaagaaaaaaa 47510811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 189 - 252
Target Start/End: Complemental strand, 4195448 - 4195386
Alignment:
Q  189 ggcattgattaaagtgttaaaattagtaagtttgcattaaaaaatgttgtaattattgctaaga 252  Q
    ||||||| |||||||  |||||| ||||||||||||| |||||||| ||||||| |||||||||    
T  4195448 ggcattggttaaagtactaaaataagtaagtttgcataaaaaaatggtgtaatt-ttgctaaga 4195386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 258
Target Start/End: Complemental strand, 32375331 - 32375270
Alignment:
Q  197 ttaaagtgttaaaattagtaagtttgcattaaaaaatgttgtaattattgctaagacaaaaa 258  Q
    |||||||  |||||| |||||||| ||||| |||| || ||||||||||||||||| |||||    
T  32375331 ttaaagtactaaaataagtaagttagcattgaaaagtggtgtaattattgctaagaaaaaaa 32375270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 211
Target Start/End: Complemental strand, 24301999 - 24301955
Alignment:
Q  167 gaatgctaatgagtgtctttgaggcattgattaaagtgttaaaat 211  Q
    ||||||||||||||| |||||||| |||  |||||||||||||||    
T  24301999 gaatgctaatgagtgcctttgaggtattagttaaagtgttaaaat 24301955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 262
Target Start/End: Complemental strand, 25118691 - 25118635
Alignment:
Q  206 taaaattagtaagtttgcattaaaaaatgttgtaattattgctaagacaaaaataaa 262  Q
    |||||| |||||||||||||| |||| || |||||| |||||||||| |||| ||||    
T  25118691 taaaataagtaagtttgcattgaaaagtggtgtaatcattgctaagaaaaaagtaaa 25118635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0042 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 166 - 273
Target Start/End: Complemental strand, 83678 - 83571
Alignment:
Q  166 agaatgctaatgagtgtctttgaggcattgattaaagtgttaaaattagtaagtttgcattaaaaaatgttgtaattattgctaagacaaaaataaaaac 265  Q
    |||||| ||||||||| |||||  | |||  || |||| ||||||||||||||||||||||||||| |  ||||||||||| |||||||||| ||||||     
T  83678 agaatgttaatgagtgcctttggagtattcgttgaagtattaaaattagtaagtttgcattaaaaagtagtgtaattattgataagacaaaagtaaaaat 83579  T
Q  266 ttatattt 273  Q
    ||||||||    
T  83578 ttatattt 83571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 7e-18; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 179 - 273
Target Start/End: Complemental strand, 16516924 - 16516830
Alignment:
Q  179 gtgtctttgaggcattgattaaagtgttaaaattagtaagtttgcattaaaaaatgttgtaattattgctaagacaaaaataaaaacttatattt 273  Q
    |||||||||  |||||||||||||| ||||||| |||||||||| |||||||| || | |||||||||  ||||||||||||||  |||||||||    
T  16516924 gtgtctttggagcattgattaaagttttaaaatgagtaagtttgtattaaaaattggtataattattgtaaagacaaaaataaagtcttatattt 16516830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 185 - 273
Target Start/End: Original strand, 46536641 - 46536729
Alignment:
Q  185 ttgaggcattgattaaagtgttaaaattagtaagtttgcattaaaaaatgttgtaattattgctaagacaaaaataaaaacttatattt 273  Q
    ||||| ||||||||||||| ||||||| ||||| |||||| || ||| |  |||| |||||| |||||||||| ||||||||| |||||    
T  46536641 ttgagacattgattaaagtattaaaataagtaattttgcaatacaaagttgtgtagttattgataagacaaaagtaaaaacttgtattt 46536729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 168 - 245
Target Start/End: Original strand, 4064117 - 4064194
Alignment:
Q  168 aatgctaatgagtgtctttgaggcattgattaaagtgttaaaattagtaagtttgcattaaaaaatgttgtaattatt 245  Q
    |||| |||||||||||||| ||  |||| ||||||| |||||| ||||||||||| |||||||| |  ||||||||||    
T  4064117 aatgttaatgagtgtctttaagatattggttaaagtattaaaagtagtaagtttgaattaaaaagttgtgtaattatt 4064194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 189 - 273
Target Start/End: Complemental strand, 8772518 - 8772434
Alignment:
Q  189 ggcattgattaaagtgttaaaattagtaagtttgcattaaaaaatgttgtaattattgctaagacaaaaataaaaacttatattt 273  Q
    ||||||| |||||||  |||||| ||||| |||||||  |||| || |||||||||||| ||||||||| |||| |||| |||||    
T  8772518 ggcattggttaaagtactaaaataagtaaatttgcatcgaaaagtggtgtaattattgccaagacaaaagtaaagacttgtattt 8772434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 189 - 273
Target Start/End: Original strand, 12188630 - 12188714
Alignment:
Q  189 ggcattgattaaagtgttaaaattagtaagtttgcattaaaaaatgttgtaattattgctaagacaaaaataaaaacttatattt 273  Q
    |||||||  ||||||  |||||| ||||| |||| ||| ||||||| ||||||||||||||||| |||| |||||| || |||||    
T  12188630 ggcattggataaagtactaaaataagtaattttgtattgaaaaatggtgtaattattgctaagaaaaaagtaaaaatttgtattt 12188714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 190 - 273
Target Start/End: Complemental strand, 4449127 - 4449044
Alignment:
Q  190 gcattgattaaagtgttaaaattagtaagtttgcattaaaaaatgttgtaattattgctaagacaaaaataaaaacttatattt 273  Q
    |||||| |||||||  |||||| | || ||||| ||| ||||||| ||||||||||| ||||| |||||| ||||||| |||||    
T  4449127 gcattggttaaagtactaaaataaataggtttgtattgaaaaatggtgtaattattgttaagaaaaaaattaaaacttgtattt 4449044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 166 - 257
Target Start/End: Original strand, 7330516 - 7330607
Alignment:
Q  166 agaatgctaatgagtgtctttgaggcattgattaaagtgttaaaattagtaagtttgcattaaaaaatgttgtaattattgctaagacaaaa 257  Q
    |||||| ||||||||||| ||||  ||||| |||||||  |||||| ||||||  |||||| |||| || || |||||||||||||| ||||    
T  7330516 agaatgttaatgagtgtccttgaaacattggttaaagtactaaaataagtaagcatgcattgaaaagtgatgcaattattgctaagaaaaaa 7330607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 191 - 262
Target Start/End: Original strand, 44603626 - 44603697
Alignment:
Q  191 cattgattaaagtgttaaaattagtaagtttgcattaaaaaatgttgtaattattgctaagacaaaaataaa 262  Q
    |||||||||||||  | |||| ||||||||||| | ||||| || |||||| |||||||||| |||||||||    
T  44603626 cattgattaaagtacttaaataagtaagtttgcctcaaaaagtggtgtaatgattgctaagaaaaaaataaa 44603697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 236 - 267
Target Start/End: Original strand, 52426245 - 52426276
Alignment:
Q  236 tgtaattattgctaagacaaaaataaaaactt 267  Q
    ||||||||||||||||||||||||||||||||    
T  52426245 tgtaattattgctaagacaaaaataaaaactt 52426276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 273
Target Start/End: Original strand, 8376326 - 8376410
Alignment:
Q  192 attgattaaagtgttaaaattagtaagtttgcat---taaaaaatgttgtaattattgctaagacaaaaataaaaacttatattt 273  Q
    |||| ||||||| ||||||| |||||||||||||    |||||||| ||||||||||| ||  | |||| |||||||||||||||    
T  8376326 attggttaaagtattaaaataagtaagtttgcataaaaaaaaaatggtgtaattattgttagaaaaaaagtaaaaacttatattt 8376410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 215 - 273
Target Start/End: Original strand, 48615464 - 48615522
Alignment:
Q  215 taagtttgcattaaaaaatgttgtaattattgctaagacaaaaataaaaacttatattt 273  Q
    ||||||||||| |||||||  ||||||||| | ||||| |||||||||||||| |||||    
T  48615464 taagtttgcatcaaaaaattatgtaattatcgttaagataaaaataaaaacttgtattt 48615522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 231 - 273
Target Start/End: Complemental strand, 50014248 - 50014206
Alignment:
Q  231 aatgttgtaattattgctaagacaaaaataaaaacttatattt 273  Q
    |||| ||||||||||||||||||||||||||||| || |||||    
T  50014248 aatggtgtaattattgctaagacaaaaataaaaatttgtattt 50014206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 252
Target Start/End: Original strand, 15330845 - 15330905
Alignment:
Q  192 attgattaaagtgttaaaattagtaagtttgcattaaaaaatgttgtaattattgctaaga 252  Q
    ||||| |||||| ||||||| || ||||||||||  ||||||  |||||||||||||||||    
T  15330845 attgactaaagtattaaaataagaaagtttgcatcgaaaaattgtgtaattattgctaaga 15330905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 273
Target Start/End: Complemental strand, 33673562 - 33673502
Alignment:
Q  213 agtaagtttgcattaaaaaatgttgtaattattgctaagacaaaaataaaaacttatattt 273  Q
    ||||| ||| ||||||||| | ||||||||||| |||||| |||||| |||| ||||||||    
T  33673562 agtaaatttacattaaaaattattgtaattattactaagataaaaatcaaaatttatattt 33673502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 166 - 273
Target Start/End: Original strand, 32956496 - 32956603
Alignment:
Q  166 agaatgctaatgagtgtctttgaggcattgattaaagtgttaaaattagtaagtttgcattaaaaaatgttgtaattattgctaagacaaaaataaaaac 265  Q
    |||||||||||||||| | ||||||||||| ||||  || ||||||| |||| ||||||| |||||||| ||| |||||||  ||||||||| |||||      
T  32956496 agaatgctaatgagtgcccttgaggcattggttaagctgataaaattcgtaactttgcatcaaaaaatggtgtgattattggcaagacaaaagtaaaagt 32956595  T
Q  266 ttatattt 273  Q
    ||||||||    
T  32956596 ttatattt 32956603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 198 - 264
Target Start/End: Original strand, 40244832 - 40244898
Alignment:
Q  198 taaagtgttaaaattagtaagtttgcattaaaaaatgttgtaattattgctaagacaaaaataaaaa 264  Q
    |||||||||||||||| ||| |||||| |||||||||||||||||||| | | ||||||||||||||    
T  40244832 taaagtgttaaaattaataaatttgcaataaaaaatgttgtaattattaccacgacaaaaataaaaa 40244898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 192 - 273
Target Start/End: Complemental strand, 7833641 - 7833560
Alignment:
Q  192 attgattaaagtgttaaaattagtaagtttgcattaaaaaatgttgtaattattgctaagacaaaaataaaaacttatattt 273  Q
    |||| |||||||  |||||| | ||||||||||| |||||||| ||||||||||||||||| |||| |||| |||| |||||    
T  7833641 attggttaaagtactaaaataaataagtttgcataaaaaaatgatgtaattattgctaagaaaaaagtaaagacttgtattt 7833560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 166 - 267
Target Start/End: Complemental strand, 48983148 - 48983048
Alignment:
Q  166 agaatgctaatgagtgtctttgaggcattgattaaagtgttaaaattagtaagtttgcattaaaaaatgttgtaattattgctaagacaaaaataaaaac 265  Q
    |||||| ||||||||||| ||||||||||  ||||| || |||||||| ||||||| ||||||||  || ||||||||||  |||  |||||||||||||    
T  48983148 agaatgttaatgagtgtcattgaggcatttgttaaaatgataaaattaataagtttacattaaaatgtg-tgtaattattcttaaagcaaaaataaaaac 48983050  T
Q  266 tt 267  Q
    ||    
T  48983049 tt 48983048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 189 - 257
Target Start/End: Complemental strand, 31245347 - 31245279
Alignment:
Q  189 ggcattgattaaagtgttaaaattagtaagtttgcattaaaaaatgttgtaattattgctaagacaaaa 257  Q
    ||||||| || ||||  |||||| |||||||||||||  ||||||| ||||||||||||||||||||||    
T  31245347 ggcattggttgaagtactaaaataagtaagtttgcatcgaaaaatggtgtaattattgctaagacaaaa 31245279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 183 - 273
Target Start/End: Complemental strand, 40019596 - 40019507
Alignment:
Q  183 ctttgaggcattgattaaagtgttaaaattagtaagtttgcattaaaaaatgttgtaattattgctaagacaaaaataaaaacttatattt 273  Q
    ||||| ||||||| ||||||| ||||||| | |||||||||||| |||| || ||| ||||||||||||| |||| |||| |||| |||||    
T  40019596 ctttggggcattggttaaagtattaaaataaataagtttgcattgaaaagtgatgt-attattgctaagaaaaaagtaaagacttgtattt 40019507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 185 - 267
Target Start/End: Complemental strand, 46288941 - 46288859
Alignment:
Q  185 ttgaggcattgattaaagtgttaaaattagtaagtttgcattaaaaaatgttgtaattattgctaagacaaaaataaaaactt 267  Q
    ||||||||||||| || ||   ||||| || || |||||| ||||||||  ||||||||||||||||||||||| ||||||||    
T  46288941 ttgaggcattgatcaacgtaccaaaataagcaattttgcaataaaaaattatgtaattattgctaagacaaaaacaaaaactt 46288859  T

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Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 185 - 273
Target Start/End: Complemental strand, 31860405 - 31860317
Alignment:
Q  185 ttgaggcattgattaaagtgttaaaattagtaagtttgcattaaaaaatgttgtaattattgctaagacaaaaataaaaacttatattt 273  Q
    ||||| ||||| |||||||  |||||| |||||||||||||  ||||||| ||||||||||| |||||  ||| |||| |||| |||||    
T  31860405 ttgagccattggttaaagtactaaaatgagtaagtttgcatcgaaaaatggtgtaattattgataagaagaaagtaaagacttgtattt 31860317  T

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Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 166 - 273
Target Start/End: Complemental strand, 44377410 - 44377298
Alignment:
Q  166 agaatgctaatgagtgtctttgagg-cattgattaaagtgttaaaattagtaagtttgcat----taaaaaatgttgtaattattgctaagacaaaaata 260  Q
    |||||||||||| ||||||||| || |||| |||||| | |||||||||||||||||  ||     |||||||   ||||||| |  |||||||||||||    
T  44377410 agaatgctaatgggtgtctttgggggcattaattaaaatattaaaattagtaagtttttataaaaaaaaaaatagcgtaattactattaagacaaaaata 44377311  T
Q  261 aaaacttatattt 273  Q
    |||||||||||||    
T  44377310 aaaacttatattt 44377298  T

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Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 166 - 273
Target Start/End: Complemental strand, 44386277 - 44386165
Alignment:
Q  166 agaatgctaatgagtgtctttgagg-cattgattaaagtgttaaaattagtaagtttgcat----taaaaaatgttgtaattattgctaagacaaaaata 260  Q
    |||||||||||| ||||||||| || |||| |||||| | |||||||||||||||||  ||     |||||||   ||||||| |  |||||||||||||    
T  44386277 agaatgctaatgggtgtctttgggggcattaattaaaatattaaaattagtaagtttttataaaaaaaaaaatagcgtaattactattaagacaaaaata 44386178  T
Q  261 aaaacttatattt 273  Q
    |||||||||||||    
T  44386177 aaaacttatattt 44386165  T

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Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 191 - 273
Target Start/End: Original strand, 22680724 - 22680806
Alignment:
Q  191 cattgattaaagtgttaaaattagtaagtttgcattaaaaaatgttgtaattattgctaagacaaaaataaaaacttatattt 273  Q
    ||||| |||||||  | |||| |||||||||||||  |||| || |||||| |||||||||| ||||||||| |||| |||||    
T  22680724 cattggttaaagtacttaaataagtaagtttgcatcgaaaagtggtgtaatgattgctaagaaaaaaataaagacttttattt 22680806  T

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Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 273
Target Start/End: Complemental strand, 41104141 - 41104093
Alignment:
Q  224 attaaaaaatgttgtaattattgctaagacaaaaataaaaacttatattt 273  Q
    ||||||||||  ||||||||||| |||||| |||||||||||||||||||    
T  41104141 attaaaaaatagtgtaattattgttaagac-aaaataaaaacttatattt 41104093  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 161 - 262
Target Start/End: Original strand, 31505500 - 31505600
Alignment:
Q  161 aaagcagaatgctaatgagtgtctttgaggcattgattaaagtgttaaaattagtaagtttgcattaaaaaatgttgtaattattgctaagacaaaaata 260  Q
    |||| ||||||||||  | ||||||| |||||||| ||||||| ||||||| ||||| |||| |||||||| |  ||||||||||| |||||||||| ||    
T  31505500 aaaggagaatgctaacaattgtctttaaggcattggttaaagtattaaaataagtaaatttgtattaaaaa-taatgtaattattgttaagacaaaagta 31505598  T
Q  261 aa 262  Q
    ||    
T  31505599 aa 31505600  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 166 - 273
Target Start/End: Complemental strand, 20164572 - 20164461
Alignment:
Q  166 agaatgctaatgagtgtctttgagg-cattgattaaagtgttaaaattagtaagtttgcat---taaaaaatgttgtaattattgctaagacaaaaataa 261  Q
    |||||||||||| ||||||||| || |||| |||||| | |||||||||||||||||  ||    |||||||   ||||||| |  ||||||||||||||    
T  20164572 agaatgctaatgggtgtctttgggggcattaattaaaatattaaaattagtaagtttttataaaaaaaaaatagcgtaattactattaagacaaaaataa 20164473  T
Q  262 aaacttatattt 273  Q
    ||||||||||||    
T  20164472 aaacttatattt 20164461  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 197 - 273
Target Start/End: Complemental strand, 41168738 - 41168661
Alignment:
Q  197 ttaaagtgttaaaattagtaagtttgcattaaaaaatgttgtaatta-ttgctaagacaaaaataaaaacttatattt 273  Q
    |||||||  |||||| |||||||||||||| |||| || |||||||| |||||||||||||| |||| |||| |||||    
T  41168738 ttaaagtactaaaataagtaagtttgcattgaaaagtgatgtaattatttgctaagacaaaagtaaagacttgtattt 41168661  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 166 - 273
Target Start/End: Original strand, 3670513 - 3670621
Alignment:
Q  166 agaatgctaatgagtgtctttgaggcattgattaaagtgtt-aaaattagtaagtttgcattaaaaaatgttgtaattattgctaagacaaaaataaaaa 264  Q
    |||||| ||| |||||||||||   ||||| ||||||| || ||||| |||||||||  |||||||| |  ||||||||||| ||| |||||| ||||||    
T  3670513 agaatgttaacgagtgtctttggaacattggttaaagttttgaaaataagtaagtttttattaaaaagttgtgtaattattgttaaaacaaaattaaaaa 3670612  T
Q  265 cttatattt 273  Q
    ||| |||||    
T  3670613 cttgtattt 3670621  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 236 - 267
Target Start/End: Original strand, 3423786 - 3423817
Alignment:
Q  236 tgtaattattgctaagacaaaaataaaaactt 267  Q
    ||||||||||||||||||||||||||||||||    
T  3423786 tgtaattattgctaagacaaaaataaaaactt 3423817  T

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Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 206 - 273
Target Start/End: Original strand, 43645380 - 43645447
Alignment:
Q  206 taaaattagtaagtttgcattaaaaaatgttgtaattattgctaagacaaaaataaaaacttatattt 273  Q
    |||||| | |||||||||||||||||||  |||| |||||| ||||| ||||||||||  ||||||||    
T  43645380 taaaataaataagtttgcattaaaaaatagtgtagttattgttaagagaaaaataaaattttatattt 43645447  T

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Target: scaffold0007 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 197 - 273
Target Start/End: Complemental strand, 246623 - 246547
Alignment:
Q  197 ttaaagtgttaaaattagtaagtttgcattaaaaaatgttgtaattattgctaagacaaaaataaaaacttatattt 273  Q
    |||||||  |||||| |||||||||||||  |||| || ||||||||||||| ||| |||| ||||||||| |||||    
T  246623 ttaaagtactaaaataagtaagtttgcatcgaaaagtggtgtaattattgctcagaaaaaagtaaaaacttgtattt 246547  T

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