View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9192_low_15 (Length: 269)
Name: NF9192_low_15
Description: NF9192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9192_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 249; Significance: 1e-138; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 253
Target Start/End: Original strand, 2213486 - 2213738
Alignment:
| Q |
1 |
taaagggcaataagttgtttcttgagtgaaactctgtttcatcttttgaatgtctactttctacagtgttctgcttctattatttattgctcttgtgctt |
100 |
Q |
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| T |
2213486 |
taaagggcaataagttgtttcttgattgaaactctgtttcatcttttgaatgtctactttctacagtgttctgcttctattatttattgctcttgtgctt |
2213585 |
T |
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| Q |
101 |
tcgcagtgctgttagtggacatccctggtcgccttgttatagtattccttttactagcttcttccactcgattgttataaagttttaaatattcaaataa |
200 |
Q |
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| T |
2213586 |
tcgcagtgctgttagtggacatccctggtcgccttgttatagtattccttttactagcttcttccactcgattgttataaagttttaaatattcaaataa |
2213685 |
T |
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| Q |
201 |
ttgcaggcttgcaatgctcatggacttcattgtgttcctttatatgatacctt |
253 |
Q |
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| T |
2213686 |
ttgcaggcttgcaatgctcatggacttcattgtgttcctttatatgatacctt |
2213738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 132 - 253
Target Start/End: Original strand, 2200939 - 2201062
Alignment:
| Q |
132 |
ccttgttatagtattccttttactagcttcttccactcgattgttataaagttttaaa---tattcaaataattgcaggcttgcaatgctcatggacttc |
228 |
Q |
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| T |
2200939 |
ccttgttataatattccttt-actagcttcttccacttggttgttattaagttttaaaatatattcaaataattgcaggcttgcaatgctcatggacttc |
2201037 |
T |
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| Q |
229 |
attgtgttcctttatatgatacctt |
253 |
Q |
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| T |
2201038 |
attgtgttcctttatacgatacctt |
2201062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 2200835 - 2200932
Alignment:
| Q |
1 |
taaagggcaataagttgt-----ttcttgagtgaaactctgtttcatcttttgaatgtctactttctacagtgttctgcttctattatttattgctct |
93 |
Q |
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|||||||||||||||||| |||| || |||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| |
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| T |
2200835 |
taaagggcaataagttgtgttctttctggattgaaactctgtttcatcttttgaatgtctactttctacggtgttctgcttctatgatttattgctct |
2200932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 197 - 253
Target Start/End: Complemental strand, 41932203 - 41932147
Alignment:
| Q |
197 |
ataattgcaggcttgcaatgctcatggacttcattgtgttcctttatatgatacctt |
253 |
Q |
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|||||| ||||| |||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
41932203 |
ataatttcaggcctgcaatgctcatggactttattgtgttcctttatatgatacctt |
41932147 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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