View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9192_low_2 (Length: 842)
Name: NF9192_low_2
Description: NF9192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9192_low_2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 314; Significance: 1e-176; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 314; E-Value: 1e-176
Query Start/End: Original strand, 402 - 823
Target Start/End: Original strand, 8859816 - 8860241
Alignment:
| Q |
402 |
acatttattttctcacaaactcatatcataattttactaatttgtagcannnnnnnn--ataagttagttcaaataactaatggcctataannnnnnnc- |
498 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| | |
|
|
| T |
8859816 |
acatttattttctcacaaactcatatcataattttactaatttgtagcattttttttttataagttagttcaaataactaatagcctataatttttttcc |
8859915 |
T |
|
| Q |
499 |
tctcaatcttacgcttgttattttaaaggagaaacctaaatactaatctaacatattatttttgtcatttcatatttaacttatccgcataaaaaaccaa |
598 |
Q |
| |
|
|||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8859916 |
tctcaatcttacacttgttattttaaccgagaaacctaaatactaatctaacatattatttttgtcatttcatatttaacttatccgcataaaaaaccaa |
8860015 |
T |
|
| Q |
599 |
atacattaattccacattatatattagccatgcatccctaaaaacaa-atattatccatgcacaagaaaacataatgaaggaaaatgcaagattagggca |
697 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||| ||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8860016 |
ataaattaattccacattatatattagccatgcatcgctaaaaaaaatatattatccatgcacaagaaaacataatgaaggaaaatgcaagattagggca |
8860115 |
T |
|
| Q |
698 |
gaaagttagggctagtttttacttgacttagaagaaggaggaatggagtataataaaaatcaaaatttgaatagagaaagtgtactacatacatatgagg |
797 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |
|
|
| T |
8860116 |
gaaagttagggctagtttttacttgacttagaagagggaggaatggagtataataaaaatcaaaatttgaatagagaaagtgtactacatatatgtgagg |
8860215 |
T |
|
| Q |
798 |
tttgatgatattgctaagctaggaat |
823 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
8860216 |
tttgatgatattgctaagctaggaat |
8860241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 155; E-Value: 8e-82
Query Start/End: Original strand, 205 - 404
Target Start/End: Original strand, 8859560 - 8859754
Alignment:
| Q |
205 |
caactaatttttaatatgaagactacatccatttataaggtttactcaatccttataaatccaacttagatgggcattgtcccactttaataaacttaac |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8859560 |
caactaatttttaatatgaagactacatccatttataatg---actcaatccttataaatccaacttagatgggcattgtcccactttaataaacttaac |
8859656 |
T |
|
| Q |
305 |
gttcaaatcttattacatctaatatgagattcttaacataactctttaagcttaatttatagcaaccaccttctagatatactatagattctacccaaca |
404 |
Q |
| |
|
|||||||| |||| | |||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8859657 |
gttcaaatattatcagatctaatatgagattcttaacataactc--taagtttaatttatagcaaccaccttctagatatactatagattctacccaaca |
8859754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 129; E-Value: 3e-66
Query Start/End: Original strand, 47 - 192
Target Start/End: Original strand, 8859059 - 8859205
Alignment:
| Q |
47 |
atgtgatcataagagaaatatagaggaaaaactgaggtgtaatat--gagtatataaaaattaaaggtattcgtatgtatatgtacacacacattattct |
144 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8859059 |
atgtgatcataagagaaatatagag-aaaaactgaggtgtaatatatgagtatataaaaattaaaggtattcgtatgtatatgtacacacacattattct |
8859157 |
T |
|
| Q |
145 |
aagctatatgacccattctgcactataaccgactatatttgtgttatt |
192 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8859158 |
aagctatatgacccattctgcactataaccgactatatttgtgttatt |
8859205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University