View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9192_low_3 (Length: 817)
Name: NF9192_low_3
Description: NF9192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9192_low_3 |
 | |
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Alignment Details
Target: chr1 (Bit Score: 685; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 685; E-Value: 0
Query Start/End: Original strand, 1 - 801
Target Start/End: Complemental strand, 44926349 - 44925548
Alignment:
| Q |
1 |
gtcttcttattatcattgtcgctactttcacccttctggaacacgctcaatacatggcacaaactgcatatgtccagtattagtaaccnnnnnnnctttt |
100 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
44926349 |
gtcttcttattatcattatcgctactttcacccttctggaacacgctcaatacatggcacaaactgcatatgtccagtattagtaaccaaaaaaactttt |
44926250 |
T |
|
| Q |
101 |
ctttaattaattgcacaaacaaccattgccaagactttacctctcggctgatataactagttttccgttttggtactctggatttttgttatccatcaat |
200 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
44926249 |
ctttaattaattacacaaacaaccattgccaagactttacctctcggctgatataactagttttccgtttcggtactctggatttttgttatccatcaat |
44926150 |
T |
|
| Q |
201 |
tgataaaaaactgcagatgcggcaatctctttgatgtgattacttagtagcatagtgtcagaatgaccgatagtattcaagtcatcacaaccaatgtcat |
300 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
44926149 |
tgataaaacactgcagatgcggcaatctctttgatgtgattacttagtagcatagtgtcagaatgaccgatagtattcaagtcatcacaaccaatgttat |
44926050 |
T |
|
| Q |
301 |
tctctgcaagcacttgagaaatgtgtttcaactgagtctttgtcatggcctcttctagttggactttccaaattttgagacgagactcatcttgaggcgg |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44926049 |
tctctgcaagcacttgagaaatgtgtttcaactgagtctttgtcatggcctcttctagttggactttccaaattttgagacgagactcatcttgaggcgg |
44925950 |
T |
|
| Q |
401 |
tttgatctcaatgttgcaagggaataacatagtgagtttttcatcaacttctacacatttatcttcggaatcataaatccgggaaccaagtatcaaaact |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
44925949 |
tttgatctcaatgttgcaagggaataacatagtgagtttttcatcaacttctacacatttatcttcggaatcataaatccgggaaccaagtatcaaaact |
44925850 |
T |
|
| Q |
501 |
gaccctgaaagtttatttaatagctcatggaacaaattgtacatcctaggatattgtcgaaggtcattctcaacattcttgatgtataagataacagaat |
600 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
44925849 |
gaccctgaaagtttatttaatagctcatggaacaaattgtacatcctaggatattgtcgaaagtcattctcaacattcttgatgtataagataacagaat |
44925750 |
T |
|
| Q |
601 |
cagtttccaatatagaaagcaagacctgnnnnnnnnttacaattgtgttgcttgttaaaattgaaattgaacaatgtcaccgaaatttcgtcaactataa |
700 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |
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|
| T |
44925749 |
cagtttccaatatagaaagcaagacctgaaaaaaaattacaattgtgttgcttgttaaaatttaaattgaacaatgtcaccgcaatttcgtcaactataa |
44925650 |
T |
|
| Q |
701 |
tgttttctttgatt-nnnnnnnntttaagctttgaaaagctttcggtgatataatcaccttgtagagtgaatctaggagacgcttttcatcaaaacagac |
799 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44925649 |
tgttttctttgattcaaaaaaaatttaagctttgaaaagccttcagtgatataatcaccttgtagagtgaatctaggagacgcttttcatcaaaacagac |
44925550 |
T |
|
| Q |
800 |
ac |
801 |
Q |
| |
|
|| |
|
|
| T |
44925549 |
ac |
44925548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 326 - 628
Target Start/End: Complemental strand, 44934181 - 44933879
Alignment:
| Q |
326 |
tttcaactgagtctttgtcatggcctcttctagttggactttccaaattttgagacgagactcatcttgaggcggtttgatctcaatgttgcaagggaat |
425 |
Q |
| |
|
|||||| ||||||||| ||||||||| || ||||||| |||||| ||||||||| ||| |||||||||||| ||| ||||||| |||||| |||||||| |
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|
| T |
44934181 |
tttcaagtgagtctttttcatggccttttttagttggcttttccagattttgagatgagtctcatcttgaggtggtgtgatctctatgttgtaagggaat |
44934082 |
T |
|
| Q |
426 |
aacatagtgagtttttcatcaacttctacacatttatcttcggaatcataaatccgggaaccaagtatcaaaactgaccctgaaagtttatttaatagct |
525 |
Q |
| |
|
||||||||||||||||||| |||| ||| |||| || |||||||| ||||||||| |||||||| ||||| |||||||||||||||||| || |
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|
| T |
44934081 |
aacatagtgagtttttcattgactttggtacagttatattttaaatcataaggccgggaaccgagtatcaacactgatcctgaaagtttatttaatgtct |
44933982 |
T |
|
| Q |
526 |
catggaacaaattgtacatcctaggatattgtcgaaggtcattctcaacattcttgatgtataagataacagaatcagtttccaatatagaaagcaagac |
625 |
Q |
| |
|
|||||||| |||||||||| || || ||| | | ||||||||||||||||||||||| ||||||||| ||| ||| ||||||||| |||||| |
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|
| T |
44933981 |
tttggaacaatctgtacatccttggtgatccaagaaagaccttctcaacattcttgatgtataaaataacagaaccagcttctgatatagaaaccaagac |
44933882 |
T |
|
| Q |
626 |
ctg |
628 |
Q |
| |
|
||| |
|
|
| T |
44933881 |
ctg |
44933879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 44934526 - 44934451
Alignment:
| Q |
1 |
gtcttcttattatcattgtcgctactttcacccttctggaacacgctcaatacatggcacaaactgcatatgtcca |
76 |
Q |
| |
|
|||||||| ||||| || |||||||||||||||| |||||||| |||| |||||||| ||||||||||||||||| |
|
|
| T |
44934526 |
gtcttcttgttatccttctcgctactttcaccctcctggaacagactcagtacatggcgcaaactgcatatgtcca |
44934451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 748 - 794
Target Start/End: Complemental strand, 44933759 - 44933713
Alignment:
| Q |
748 |
atataatcaccttgtagagtgaatctaggagacgcttttcatcaaaa |
794 |
Q |
| |
|
|||||||||||||||||||||||| ||||| | |||||||||||||| |
|
|
| T |
44933759 |
atataatcaccttgtagagtgaatgtaggaaaagcttttcatcaaaa |
44933713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 62; Significance: 2e-26; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 343 - 523
Target Start/End: Complemental strand, 32199565 - 32199384
Alignment:
| Q |
343 |
tcatggcctcttctagttggactttccaaattttgagacgagactc-atcttgaggcggtttgatctcaatgttgcaagggaataacatagtgagttttt |
441 |
Q |
| |
|
|||| ||||||| || |||| ||||||| ||||||||||||| | |||| |||| |||||||||||| |||||||||||||||||| | || |||| |
|
|
| T |
32199565 |
tcatagcctcttataattgggctttccagattttgagacgagtttttatctgaaggcagtttgatctcaacgttgcaagggaataacatggcaagctttt |
32199466 |
T |
|
| Q |
442 |
catcaacttctacacatttatcttcggaatcataaatccgggaaccaagtatcaaaactgaccctgaaagtttatttaatag |
523 |
Q |
| |
|
||||||||| | ||| |||||||| ||||||||||| ||||||| || ||||| ||||| ||||||||||| |||||||| |
|
|
| T |
32199465 |
catcaacttttttacaattatcttctaaatcataaatctgggaaccgaggatcaacactgatcctgaaagtttctttaatag |
32199384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 117 - 315
Target Start/End: Complemental strand, 32197329 - 32197130
Alignment:
| Q |
117 |
aaacaaccattgccaagac-tttacctctcggctgatataactagttttccgttttggtactctggatttttgttatccatcaattgataa-aaaactgc |
214 |
Q |
| |
|
|||||||||||| | |||| ||||||||| | |||||||||| |||| | |||||||||||||||| ||| |||||||||||||||||| |||||||| |
|
|
| T |
32197329 |
aaacaaccattgtcgagacctttacctctttggcgatataactaatttttcattttggtactctggatattttttatccatcaattgataaaaaaactgc |
32197230 |
T |
|
| Q |
215 |
agatgcggcaatctctttgatgtgattacttagtagcatagtgtcagaatgaccgatagtattcaagtcatcacaaccaatgtcattctctgcaagcact |
314 |
Q |
| |
|
|||||| ||||| |||| |||||||| | | ||| ||||| ||||| || | ||| | |||||||||| ||||| |||||||||| |||||||||| |
|
|
| T |
32197229 |
agatgccgcaatttcttcgatgtgatcattgagttgcataatgtcattatagctgattgaattcaagtcaacacaa-caatgtcatttgttgcaagcact |
32197131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 348 - 429
Target Start/End: Complemental strand, 32197086 - 32197004
Alignment:
| Q |
348 |
gcctcttctagttggactttccaaattttgagacgagactca-tcttgaggcggtttgatctcaatgttgcaagggaataaca |
429 |
Q |
| |
|
|||||||||| |||| ||||||| ||||||||||||| | | |||| |||| |||||||||||| ||||||||||||||||| |
|
|
| T |
32197086 |
gcctcttctaattgggctttccagattttgagacgagttttaatcttaaggcagtttgatctcaacgttgcaagggaataaca |
32197004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 723 - 794
Target Start/End: Complemental strand, 32196598 - 32196527
Alignment:
| Q |
723 |
tttaagctttgaaaagctttcggtgatataatcaccttgtagagtgaatctaggagacgcttttcatcaaaa |
794 |
Q |
| |
|
|||||||| ||||||||||| |||||||||||||||| |||||||| |||| || ||||||||| ||||| |
|
|
| T |
32196598 |
tttaagctatgaaaagcttttagtgatataatcaccttatagagtgagtctatgaagcgcttttcaacaaaa |
32196527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 76
Target Start/End: Complemental strand, 32197411 - 32197372
Alignment:
| Q |
37 |
tggaacacgctcaatacatggcacaaactgcatatgtcca |
76 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| ||||||| |
|
|
| T |
32197411 |
tggaacacgctcaatacatgacacaaactgcacatgtcca |
32197372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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