View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9192_low_5 (Length: 435)
Name: NF9192_low_5
Description: NF9192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9192_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 418; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 1 - 426
Target Start/End: Original strand, 31860705 - 31861130
Alignment:
| Q |
1 |
ttataaatattagctatccataataatgtcaaaataattggaagcaaatcactttgatttatcctaaaacttgtttttcttttaccacaaaagggaagat |
100 |
Q |
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| T |
31860705 |
ttataaatattagctatccataataatgtcaaaataattggaagcaaatcactttgatttatcctaaaacttgtttttcttttaccacaaaagggaaaat |
31860804 |
T |
|
| Q |
101 |
tttcagtgcagtgtttctggactagtgtcaaaaacatgggaagcaaatcattataatttatcctaaaactattttttcttttgccacaaatgggacagtt |
200 |
Q |
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| T |
31860805 |
tttcagtgcagtgtttctggactagtgtcaaaaacatgggaagcaaatcattataatttatcctaaaactattttttcttttgccacaaatgggacagtt |
31860904 |
T |
|
| Q |
201 |
ttaaatgcagtttttctagactagttttgttggtcataccacagcctgtgtcatcaacttcaaaccaaagtatcattttgttatcaatattagaagcctt |
300 |
Q |
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| T |
31860905 |
ttaaatgcagtttttctagactagttttgttggtcataccacagcctgtgtcatcaacttcaaaccaaagtatcattttgttatcaatattagaagcctt |
31861004 |
T |
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| Q |
301 |
ctttgaatggttctcatgctgcttcattttggtcttccgagaacatccaaatggcttctgctccagggtaaaattttcactatcaccgtaagaatttgga |
400 |
Q |
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| T |
31861005 |
ctttgaatggttctcatgctgcttcattttggtcttccgagaacatccgaatggcttctgctccagggtaaaattttcactatcaccgtaagaatttgga |
31861104 |
T |
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| Q |
401 |
ttttcacaccatcctctcagaataat |
426 |
Q |
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| T |
31861105 |
ttttcacaccatcctctcagaataat |
31861130 |
T |
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Back To:
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Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 235 - 285
Target Start/End: Complemental strand, 8868366 - 8868316
Alignment:
| Q |
235 |
cataccacagcctgtgtcatcaacttcaaaccaaagtatcattttgttatc |
285 |
Q |
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| T |
8868366 |
cataccacagcctgtgtcctcaacttcaaaccaaagtatcactttgttatc |
8868316 |
T |
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