View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9192_low_6 (Length: 350)

Name: NF9192_low_6
Description: NF9192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9192_low_6
NF9192_low_6
[»] chr4 (5 HSPs)
chr4 (11-334)||(6019058-6019381)
chr4 (216-334)||(16422337-16422455)
chr4 (217-334)||(44203602-44203722)
chr4 (265-329)||(41389294-41389358)
chr4 (265-333)||(41389181-41389251)
[»] chr5 (3 HSPs)
chr5 (216-334)||(408238-408356)
chr5 (265-334)||(41485065-41485134)
chr5 (130-196)||(408379-408445)
[»] chr6 (4 HSPs)
chr6 (215-334)||(18849567-18849686)
chr6 (216-334)||(16358754-16358871)
chr6 (247-333)||(26045833-26045920)
chr6 (247-333)||(26141533-26141620)
[»] scaffold0215 (1 HSPs)
scaffold0215 (216-334)||(24761-24879)
[»] chr8 (2 HSPs)
chr8 (216-334)||(3372107-3372225)
chr8 (216-290)||(9035580-9035654)
[»] scaffold0025 (1 HSPs)
scaffold0025 (217-325)||(36914-37022)
[»] chr3 (1 HSPs)
chr3 (209-330)||(4477389-4477509)
[»] chr2 (2 HSPs)
chr2 (255-334)||(41454895-41454974)
chr2 (247-334)||(13693723-13693810)
[»] chr1 (1 HSPs)
chr1 (216-334)||(35812107-35812225)
[»] chr7 (2 HSPs)
chr7 (265-334)||(33164297-33164369)
chr7 (209-334)||(28195320-28195444)


Alignment Details
Target: chr4 (Bit Score: 296; Significance: 1e-166; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 11 - 334
Target Start/End: Original strand, 6019058 - 6019381
Alignment:
Q  11 cagagatatgagctatatggtaaattagtttcttcgtcgtcactaattttctattttatagcttagatccaaaacgaagcaattgtcaatatcaggtaaa 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6019058 cagagatatgagctatatggtaaattagtttcttcgtcgtcactaattttctattttatagcttagatccaaaacgaagcaattgtcaatatcaggtaaa 6019157  T
Q  111 atgtcacttgaaagtttgcaactatgatgcataggaacgggtatggtatctggtacgatacgagtactggttccagaatacgacaacattnnnnnnnngg 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||        ||    
T  6019158 atgtcacttgaaagtttgcaactatgatgcataggaacgggtatggtatctggtacgatacgagtactggttccaaaatacgacaacattaaaaaaaagg 6019257  T
Q  211 tacaagtacgtcaataaaatcataaattttgttatggaatacaacatgaaagatttaaattcttcaattcacaacaaaaatatcacatcagaaatttaaa 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6019258 tacaagtacgtcaataaaatcataaattttgttatggaatacaacatgaaagatttaaattcttcaattcacaacaaaaatatcacatcagaaatttaaa 6019357  T
Q  311 aagtcgaaatttagagttggttac 334  Q
    ||||||||||||||||||||||||    
T  6019358 aagtcgaaatttagagttggttac 6019381  T

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Target: chr4; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 216 - 334
Target Start/End: Original strand, 16422337 - 16422455
Alignment:
Q  216 gtacgtcaataaaatcataaattttgttatggaatacaacatgaaagatttaaattcttcaattcacaacaaaaatatcacatcagaaatttaaaaagtc 315  Q
    |||||| | |||||||| || ||||||||| ||||| ||||||||||| ||||||||||| |||| || |||||| ||||||  |||| |||||||||||    
T  16422337 gtacgttagtaaaatcagaagttttgttatagaatataacatgaaagagttaaattcttcgattcgcagcaaaaaaatcacaatagaagtttaaaaagtc 16422436  T
Q  316 gaaatttagagttggttac 334  Q
     ||||||||||||||||||    
T  16422437 aaaatttagagttggttac 16422455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 217 - 334
Target Start/End: Original strand, 44203602 - 44203722
Alignment:
Q  217 tacgtcaataaaatcataaattttgttatgg---aatacaacatgaaagatttaaattcttcaattcacaacaaaaatatcacatcagaaatttaaaaag 313  Q
    ||||||||||||||||||| |||||||||     |||| |||||| ||||  |||||||||||| | |||||||||| | ||||  | ||||| ||||||    
T  44203602 tacgtcaataaaatcataagttttgttatactataatataacatggaagagataaattcttcaactgacaacaaaaacagcacaataaaaattaaaaaag 44203701  T
Q  314 tcgaaatttagagttggttac 334  Q
    | |||||||||||||||||||    
T  44203702 ttgaaatttagagttggttac 44203722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 265 - 329
Target Start/End: Original strand, 41389294 - 41389358
Alignment:
Q  265 ttaaattcttcaattcacaacaaaaatatcacatcagaaatttaaaaagtcgaaatttagagttg 329  Q
    |||||||||| |||||||||||||||  |||  | |||||||||||||||||||| ||| |||||    
T  41389294 ttaaattctttaattcacaacaaaaaattcaggttagaaatttaaaaagtcgaaacttatagttg 41389358  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 265 - 333
Target Start/End: Original strand, 41389181 - 41389251
Alignment:
Q  265 ttaaattcttcaattcacaacaaaaata--tcacatcagaaatttaaaaagtcgaaatttagagttggtta 333  Q
    |||||||||||||||||||| ||||| |  |||||  | |||||||||||||||||| | |||||||||||    
T  41389181 ttaaattcttcaattcacaaaaaaaaaaactcacaataaaaatttaaaaagtcgaaactaagagttggtta 41389251  T

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Target: chr5 (Bit Score: 87; Significance: 1e-41; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 216 - 334
Target Start/End: Complemental strand, 408356 - 408238
Alignment:
Q  216 gtacgtcaataaaatcataaattttgttatggaatacaacatgaaagatttaaattcttcaattcacaacaaaaatatcacatcagaaatttaaaaagtc 315  Q
    |||||||||||||||||||| ||||||||| ||||| ||||||||||| |||||||||||||||||||||||||| |||||||||||| |||||||||||    
T  408356 gtacgtcaataaaatcataagttttgttatagaatataacatgaaagaattaaattcttcaattcacaacaaaaaaatcacatcagaagtttaaaaagtc 408257  T
Q  316 gaaatttagagttggttac 334  Q
     ||||||||||| ||||||    
T  408256 caaatttagagtcggttac 408238  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 265 - 334
Target Start/End: Original strand, 41485065 - 41485134
Alignment:
Q  265 ttaaattcttcaattcacaacaaaaatatcacatcagaaatttaaaaagtcgaaatttagagttggttac 334  Q
    |||||||||||||||||| ||||||| ||||||  |||| |||| |||||| ||||||| ||||||||||    
T  41485065 ttaaattcttcaattcacgacaaaaaaatcacaatagaagtttacaaagtcaaaatttaaagttggttac 41485134  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 130 - 196
Target Start/End: Complemental strand, 408445 - 408379
Alignment:
Q  130 aactatgatgcataggaacgggtatggtatctggtacgatacgagtactggttccagaatacgacaa 196  Q
    ||||||| |||||||| ||||||| |||| ||||||||||||  |||||||| | |||||||| |||    
T  408445 aactatgttgcataggcacgggtacggtacctggtacgatacaggtactggtacgagaatacggcaa 408379  T

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Target: chr6 (Bit Score: 72; Significance: 1e-32; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 215 - 334
Target Start/End: Complemental strand, 18849686 - 18849567
Alignment:
Q  215 agtacgtcaataaaatcataaattttgttatggaatacaacatgaaagatttaaattcttcaattcacaacaaaaatatcacatcagaaatttaaaaagt 314  Q
    ||||||||||||||||||||| |||||| || ||||| |||||||| || ||||||||||||||||| ||||| || ||||||| |||| |||||||| |    
T  18849686 agtacgtcaataaaatcataagttttgtcatagaatataacatgaaggagttaaattcttcaattcataacaagaaaatcacattagaagtttaaaaatt 18849587  T
Q  315 cgaaatttagagttggttac 334  Q
    ||||||||||||||||||||    
T  18849586 cgaaatttagagttggttac 18849567  T

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Target: chr6; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 216 - 334
Target Start/End: Original strand, 16358754 - 16358871
Alignment:
Q  216 gtacgtcaataaaatcataaattttgttatggaatacaacatgaaagatttaaattcttcaattcacaacaaaaatatcacatcagaaatttaaaaagtc 315  Q
    |||||||||||||||||||| ||||||||| ||||| |||||||| || ||||||||||||||||| || || || ||||||| |||| |||||||||||    
T  16358754 gtacgtcaataaaatcataagttttgttatagaatataacatgaaggagttaaattcttcaattcataa-aagaaaatcacattagaagtttaaaaagtc 16358852  T
Q  316 gaaatttagagttggttac 334  Q
    |||||||||||||||||||    
T  16358853 gaaatttagagttggttac 16358871  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 247 - 333
Target Start/End: Original strand, 26045833 - 26045920
Alignment:
Q  247 gaatacaacatgaaagatttaaattcttcaattcacaacaaa-aatatcacatcagaaatttaaaaagtcgaaatttagagttggtta 333  Q
    ||||| |||||| |||| ||||||||||||||| | || ||| || || |||| |||| ||||||||||| |||||||||||||||||    
T  26045833 gaatataacatggaagagttaaattcttcaatttataaaaaataaaatgacattagaagtttaaaaagtcaaaatttagagttggtta 26045920  T

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Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 247 - 333
Target Start/End: Original strand, 26141533 - 26141620
Alignment:
Q  247 gaatacaacatgaaagatttaaattcttcaattcacaacaaa-aatatcacatcagaaatttaaaaagtcgaaatttagagttggtta 333  Q
    ||||| |||||| |||| ||||||||||||||| | || ||| || || |||| |||| ||||||||||| |||||||||||||||||    
T  26141533 gaatataacatggaagagttaaattcttcaatttataaaaaataaaatgacattagaagtttaaaaagtcaaaatttagagttggtta 26141620  T

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Target: scaffold0215 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: scaffold0215
Description:

Target: scaffold0215; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 216 - 334
Target Start/End: Original strand, 24761 - 24879
Alignment:
Q  216 gtacgtcaataaaatcataaattttgttatggaatacaacatgaaagatttaaattcttcaattcacaacaaaaatatcacatcagaaatttaaaaagtc 315  Q
    |||||||||||||||||||| |||||| || ||||| |||||||| || ||||||||||||||||| ||||| || ||||||| |||| |||||||| ||    
T  24761 gtacgtcaataaaatcataagttttgtcatagaatataacatgaaggagttaaattcttcaattcataacaagaaaatcacattagaagtttaaaaattc 24860  T
Q  316 gaaatttagagttggttac 334  Q
    |||||||||||||||||||    
T  24861 gaaatttagagttggttac 24879  T

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Target: chr8 (Bit Score: 71; Significance: 4e-32; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 216 - 334
Target Start/End: Original strand, 3372107 - 3372225
Alignment:
Q  216 gtacgtcaataaaatcataaattttgttatggaatacaacatgaaagatttaaattcttcaattcacaacaaaaatatcacatcagaaatttaaaaagtc 315  Q
    |||||||||||||||||||| |||||| || ||||| |||||||| || ||||||||||||||||| ||||| || ||||||| |||| |||||||| ||    
T  3372107 gtacgtcaataaaatcataagttttgtcatagaatataacatgaaggagttaaattcttcaattcataacaagaaaatcacattagaagtttaaaaattc 3372206  T
Q  316 gaaatttagagttggttac 334  Q
    |||||||||||||||||||    
T  3372207 gaaatttagagttggttac 3372225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 216 - 290
Target Start/End: Complemental strand, 9035654 - 9035580
Alignment:
Q  216 gtacgtcaataaaatcataaattttgttatggaatacaacatgaaagatttaaattcttcaattcacaacaaaaa 290  Q
    |||||||||||||||||||||||||||| | ||| | ||||||||||| |||||||||||||||| |||||||||    
T  9035654 gtacgtcaataaaatcataaattttgttttagaaaataacatgaaagagttaaattcttcaattcccaacaaaaa 9035580  T

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Target: scaffold0025 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 217 - 325
Target Start/End: Complemental strand, 37022 - 36914
Alignment:
Q  217 tacgtcaataaaatcataaattttgttatggaatacaacatgaaagatttaaattcttcaattcacaacaaaaatatcacatcagaaatttaaaaagtcg 316  Q
    ||||||||||||||||||| ||||||||| ||||| ||||||||||| |||||||||||||||||||||||||  ||||||| |  | |||||||||| |    
T  37022 tacgtcaataaaatcataagttttgttatagaatataacatgaaagagttaaattcttcaattcacaacaaaataatcacattaatagtttaaaaagttg 36923  T
Q  317 aaatttaga 325  Q
    |||||||||    
T  36922 aaatttaga 36914  T

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Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 209 - 330
Target Start/End: Original strand, 4477389 - 4477509
Alignment:
Q  209 ggtacaagtacgtcaataaaatcataaattttgttatggaatacaacatgaaagatttaaattcttcaattcacaacaaaaatatcacatcagaaattta 308  Q
    |||||| ||||||||||||||| |||| ||||||||| ||||| ||||||||| | ||||||||||| |||||||| ||||| ||||||| |||| ||||    
T  4477389 ggtacatgtacgtcaataaaattataagttttgttatagaatataacatgaaaaagttaaattcttcgattcacaataaaaa-atcacattagaagttta 4477487  T
Q  309 aaaagtcgaaatttagagttgg 330  Q
    |||||| ||||  |||||||||    
T  4477488 aaaagttgaaacatagagttgg 4477509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 255 - 334
Target Start/End: Complemental strand, 41454974 - 41454895
Alignment:
Q  255 catgaaagatttaaattcttcaattcacaacaaaaatatcacatcagaaatttaaaaagtcgaaatttagagttggttac 334  Q
    ||||||||| ||||||||||| |||||||||||||| ||||||  |||| ||||||||||||||||||||||||||||||    
T  41454974 catgaaagagttaaattcttcgattcacaacaaaaaaatcacaatagaagtttaaaaagtcgaaatttagagttggttac 41454895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 247 - 334
Target Start/End: Original strand, 13693723 - 13693810
Alignment:
Q  247 gaatacaacatgaaagatttaaattcttcaattcacaacaaaaatatcacatcagaaatttaaaaagtcgaaatttagagttggttac 334  Q
    ||||| |||||||| || |||||| ||||||||| ||||||  | ||||||  ||||  |||||||||| ||||||||||||||||||    
T  13693723 gaatataacatgaatgagttaaatgcttcaattcccaacaaggaaatcacaatagaagattaaaaagtcaaaatttagagttggttac 13693810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 216 - 334
Target Start/End: Original strand, 35812107 - 35812225
Alignment:
Q  216 gtacgtcaataaaatcataaattttgttatggaatacaacatgaaagatttaaattcttcaattcacaacaaaaatatcacatcagaaatttaaaaagtc 315  Q
    |||||||||||||||||| | |||||||||  |||| ||||||| |||  | |||||||||||| ||||||||||||| ||   | || |||||||||||    
T  35812107 gtacgtcaataaaatcatgagttttgttatataatataacatgagagagctgaattcttcaatttacaacaaaaatattacgataaaagtttaaaaagtc 35812206  T
Q  316 gaaatttagagttggttac 334  Q
    ||||  |||||||||||||    
T  35812207 gaaaactagagttggttac 35812225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 265 - 334
Target Start/End: Original strand, 33164297 - 33164369
Alignment:
Q  265 ttaaattcttcaattcacaacaaaaata---tcacatcagaaatttaaaaagtcgaaatttagagttggttac 334  Q
    ||||||||||| || ||||||||||| |   |||||| |||| ||||||||||||||||||||||||||||||    
T  33164297 ttaaattcttctatccacaacaaaaaaaaaatcacattagaagtttaaaaagtcgaaatttagagttggttac 33164369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 209 - 334
Target Start/End: Complemental strand, 28195444 - 28195320
Alignment:
Q  209 ggtacaagtacgtcaataaaatcataaattttgttatggaatacaacatgaaagatttaaattcttcaattcacaacaaaaat-atcacatcagaaattt 307  Q
    |||||| || |||||| |||||||| | |||||||||  |||| |||||||  ||  |||||||||||| |  |||||||||  ||||||  |||| |||    
T  28195444 ggtacaggtgcgtcaagaaaatcatgagttttgttatataatataacatga--gacctaaattcttcaactttcaacaaaaaacatcacaatagaagttt 28195347  T
Q  308 aaaaagtcgaaatttagagttggttac 334  Q
    |||||||||||| ||||||||||||||    
T  28195346 aaaaagtcgaaaattagagttggttac 28195320  T

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